TCONS_00054217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054217
Unique NameTCONS_00054217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054217 ID=TCONS_00054217|Name=TCONS_00054217|organism=Clytia hemisphaerica|type=transcript|length=2139bp
TGTACATTTTGAAGTTGAAGTAAATGGGTTATGCTTTTTGTATGATTTTC
CAAGAGAAATGAATGcgtctttttattttaatatctTTTAGATTTCTTAA
CTTAGTGAGAATATAAAGGAAACTATTACTTTGTTTGAAAGATTTAGCAT
CCGTCAAAGACATTCTAATCTTCCAAAATGGGTGCAGGATATACACTCCC
CGCCGATATGTTGACGATGAAGAACTGAAGAGACTTGGAAAGCGGTTCAG
GAAGTTGGATACTGATAACTCAGGAACCCTTTCAATTGAAGAGTTTATGT
CTCTTCCTGAGCTCCAACAAAACCCTTTAGTTCAAAGAGTCATCGAAATC
TTTGATACAGATGGTAACAAAGAAATTGACTTTCAAGaatttatcgAGGG
AATTTCCCAATTCAGTGTCAAAGGAGATAAAACACAGAAATTAAGATtTG
CATTCAAAATATATGATATCAATCAAGATGGCTTCATTTCAAATGGTGAA
CTTTTTACAGTCTTACGTATGATGGTAggaaataatttgaaagaagTTCA
GCTTCAACAAATTGTGGATAAAACTATTTTGCAATTTGACACAGATGGCG
ATGGTAAAATTAGTTATGAAGAATTTTGCAATGTTGTTGGATCGATGGAT
GTGGATAAAAAAATGGTTGTTGATGTTTAACAAAGTTCATTGCCTCAATC
CCAAAGTATATTTATTGATGGTAGTTCTTCCTCGTATGAAATCCAACGAT
GGTGAAATGAAGATGATTTCATTGTGTTTTCTGCAGGAAAACAGGATGGT
TTAGTTTTATTCATATGAAAGTGGATAGAGTTATAAAAGAAGTCTATCAT
TCATTAAATCTTCCTGGCGTGTTGGGAATATCAAGTTAGATGAAAAATTT
AACTCGAGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGATA
TTGTATGAAATTTTTAATGTAAAATTTAACGATTACtgaaattatcattt
ttttatttggggcatttttcattttctcgtTCAGGATTTattaattcaaa
attagtgttattattataaaaattccaacataatttttcatttaaagttt
TCAGACATTGTcataacaaaatatttattgTGTATTTATTATTTCTTTGT
CGTTTAAAGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAAGG
AGGCNTCCTGGCTTGTTGGGAATATCAAGTTAGATGAAAAATTTAACTCG
AGTTCAACCCATTGAATCAACTTTCAAACAAATGTTTATTGATATTGTAT
GAAATTTTAATGTAAAATTTAACGATTACtgaaattatcatttttttatt
tggggcatttttcattttctcgtTCAGGATTTattaattcaaaattagtg
ttattattataaaaattccaacataatttttcatttaaagtttTCAGACA
TTGTcataacaaaatatttattgTGTATTTATTATTTCTTTGTCGTTTAA
AGTATAACCTCGCTCTGGAACTCGAGAATGATAGCTTGAAAGGAGGCTGA
AAAATCTATTAGCATTTTTAGAATCCACTTTGAATTTAAGAAAATGACCC
TCTGTAACTGTGACGGTTAGATGAACTAAAGTAAttattttcttgatttc
tttaaaaaaaaaagaacattgtCTACAAAATTGCAAGTTTAagattattt
tccatttttaattATTCTAGTacatatatttttgttttaaaatttgtttt
acaTGCACTTTTTGCCCTAAGTTTGTTAACGATATTGATTTTTCTAGTAT
TTGTgtattattgaaagtttgtctttAGTCTAACTTTAATTTCCTTTTAA
CCCAAAAGATTGCATGGTGTATATACCAATTTATGTGCATCAAAAgtaat
tgattttattttgaagtgagATCGTCCatgaaaattttgtattttcactt
tttgaccCTTCATCTCTTTTGAATTTAGATCTCCATTAATCTCCATTACT
ACAATTAGTCAAAATCATAATCTAATTATCGAGGAAACTTTACTTTGTGA
CTACTTACtaaaggtttttcaaaatttattttttggaaattttggttttt
atgtCTGCTTTTGTGTAAACTATATATCTTTGACTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_242:546004..550815+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054217 ID=TCONS_00054217|Name=TCONS_00054217|organism=Clytia hemisphaerica|type=transcript|length=4812bp|location=Sequence derived from alignment at scaffold_242:546004..550815+ (Clytia hemisphaerica)
TGTACATTTTGAAGTTGAAGTAAATGGGTTATGCTTTTTGTATGATTTTC
CAAGAGAAATGAATGcgtctttttattttaatatctTTTAGATTTCTTAA
CTTAGTGAGAATATAAAGGAAACTATTACTTTGTTTGAAAGATTTAGCAT
CCGTCAAAGACATTCTAATCTTCCAAAATGGTAAGTTCCTTATTTCTATA
AAATCAttatgcaaattttttttcttctcaagTATATAAACCTCTTTCAC
AGTTTCTTATACTNATCTGTCAAAGACATTCTAATCTTCCAAAATGGTAA
GTTCCTTATTTCTATAAAATCattatgcaatttttttttcttctcaagTA
TATAAACCTCTTTCGGAGTTTCTTATACCCTGTCattttgttcatatttt
caccaatttttttgaaagctctCTATGGGACCAAAGATATGAGTGATTTC
ATAATTGTGACTCTATCAttagctaaaaataaaaagattgaaataaaaaa
agtaagttACATTGTTGATGAATTAGAAACAATAAAATAGTCCTCCTCAT
TTTATAAAAGTCTATAATAGTAAAGTAGTCCTGTTTTCATATCTCTtaca
aaaatagagaaaaataataatattttaatctttaagttgaggaaattttt
ttggtccCATAATATCATTTACTGTTACTGAAAATAGAgatgtttttgaa
ataaaaatgatatCCTCTTTTGTCTTGAAATGTCtgaatttttcttctgt
ttCATTTACAGGGTGCAGGATATACACTCCCCGCCGATATGGTGACACAT
TGTAGGTTTCTTTTGATGTTGTAGATAAACCTCCTATTCTCTAAAAAGAT
ACATTAGATAAGACATTCTTAATTCTAAAACACTCAATCAATGTCGACCT
GTCatatatttttagtttaaataaaattgggttttttttcaaacaatttt
tcttttttgagttAATGTTATTTAGATACTTTGAACCTATTGTAGCAAGC
AGTCTGACCCAGTTTAACCTATTAAAATGGCTTTTATTCGGGCTTGTAAG
TTaggttctttttttttctttaacctATACAAAGCTCTTCACCCTATTAT
GAAATTCTAAATCTGACAAATAAAGCAATTAGGAgccaaattttagaaaa
tattaagacgtatcaaacttttttattagGTTGTAACTTTATTCTTTCAA
TCTAAATTTTAGTTGACGATGAAGAACTGAAGAGACTTGGAAAGCGGTTC
AGGAAGTTGGATACTGATAACTCAGGAACCCTTTCAATTGAAGAGTTTAT
GTCTCTTCCTGAGCTCCAACAAAACCCTTTAGTTCAAAGAGTCATCGAAA
TCTTTGATACAGATGGTAACAAAGAAATTGACTTTCAAGGTATTGATTTA
GAAAAACTCACTTTTGTGTTTTTGCCATTTGTGTTGTCGTGTAGTTGAAT
GACTAGGACTAGGAGGTCCTCTAGCctctaaaatgttttttaacactttt
ggTTGCTTTTTAAAATCCAATGATATTCTtatgtttttagaatttatcgA
GGGAATTTCCCAATTCAGTGTCAAAGGAGATAAAACACAGAAATTAAGAT
GTAAGttaaattttgatcaaacaAAAGTGAAAACTCCCTAGTGGAGGATG
ATGATgtatttaatttaattaaatttaattaaaattgGTTTcaataccgg
gtgtgccacaaaaaagtttctctctttgaaactagttttctagaaatcta
aaaattccaaaagaaccattcctaacattggaagaagaaagataaactta
aattttgatgggccatttttatttatcaaatgcaattcattagatcaaaa
gttatgctcaattctgctcgattgaataaaaaagttacttccAGAAAGTG
Ttcgaaaatgttaaaaattgacctatcaaatttttatttcaaaattggca
atcgcaacagcctttacatgattataagagcatttttaattataattaaa
tacattaatttaatttacttttactgAAATTGTCTTAAGACTTTTTTACT
AGAATGGATAAgtaagtctatgtaaggctggatgtacctcgaaacccata
tttgatgtatttttatgaattttaccagatttctTGGCCTTTTAgacaaa
ttttctaaaaatatactGATGTGTCATGTagttatgcttctgtttaattt
gataggttgaCTTAATGATTTACactatttttttgtgttttttcagTTGC
ANgttatgcttctgtttaatttgataggttgaCTTATTAATTTACactat
ttttttgtgtttttttcagtTGCATTCAAAATATATGATATCAATCAAGA
TGGCTTCATTTCAAATGGTGAACTTTTTACAGTCTTACGTATGATGGTAg
gaaataatttgaaagaagTTCAGCTTCAACAAATTGTGGATAAAACTATT
TTGCAATTTGACACAGATGGCGATGGTAAAATTAGTTATGAAGAATTTTG
CAATGTAAGTTTACGTAGACTcttatttttcactttgtttcaGGATTTCA
TTAATCCTTTCACACTTTTATCTTGCCTTAATTTATTAAAATGGGAGGCt
taataaagaaaattttttcaaagcttttatCTATTTGAACTTGTCAGATT
TTCTACTTTTGATTTAAGCTTGTTTagggaaatttatttttcttcaattt
aaGGCAGTCTTCGAAAATCATGTGTTCTTGCCTCAGGATTTCTGATTTGT
GACTTTTCATTTTTCCTCTTTTAACTCCCAGTTCACAATAAATTCTATTT
ATGATCCtacctttttctgaaaaataatcTTGTATAGATTAATAATCAAt
aattgttgataaattttttgaaggtAAATGGACTATTCCaaagattccaa
aaattttttttgggaaaggtgaccccctggattttttttcgatttctcaG
GACCTCCCCTGGATTTTCTCTGCTTATTATTTGGACTCCCCTTGGTTTTC
GACCTTGTTTCACTGACCACCCTGGGTTTCAACCTTATTTTactaaccac
cctggatttttcacttcatttttactgaccaccctggactTAGACGTTCT
AAGTCTAGACCCCTGGATTTTTATTTATCAGACCACCCTGggcgtcacac
ctcctcaaaaTCCCCCTATTTTGAGGAGGTGTGATGCCCAGGGTGGTCTG
ATAAATAAAAATCCAGGGGATCTAGACTTAAAGCAAAtaagacaaattct
ggaatatAGCCCAATTCAATAATTGCATTTCACTGTATATTTTATCTTAC
AACAGGTTGTTGGATCGATGGATGTGGATAAAAAAATGGTTGTTGATGTT
TAACAAAGTTCATTGCCTCAATCCCAAAGTATATTTATTGATGGTAGTTC
TTCCTCGTATGAAATCCAACGATGGTGAAATGAAGATGATTTCATTGTGT
TTTCTGCAGGAAAACAGGATGGTTTAGTTTTATTCATATGAAAGTGGATA
GAGTTATAAAAGAAGTCTATCATTCATTAAATCTTCCTGGCGTGTTGGGA
ATATCAAGTTAGATGAAAAATTTAACTCGAGTTCAACCCATTGAATCAAC
TTTCAAACAAATGTTTATTGATATTGTATGAAATTTTTAATGTAAAATTT
AACGATTACtgaaattatcatttttttatttggggcatttttcattttct
cgtTCAGGATTTattaattcaaaattagtgttattattataaaaattcca
acataatttttcatttaaagtttTCAGACATTGTcataacaaaatattta
ttgTGTATTTATTATTTCTTTGTCGTTTAAAGTATAACCTCGCTCTGGAA
CTCGAGAATGATAGCTTGAAAGGAGGCNTCCTGGCTTGTTGGGAATATCA
AGTTAGATGAAAAATTTAACTCGAGTTCAACCCATTGAATCAACTTTCAA
ACAAATGTTTATTGATATTGTATGAAATTTTAATGTAAAATTTAACGATT
ACtgaaattatcatttttttatttggggcatttttcattttctcgtTCAG
GATTTattaattcaaaattagtgttattattataaaaattccaacataat
ttttcatttaaagtttTCAGACATTGTcataacaaaatatttattgTGTA
TTTATTATTTCTTTGTCGTTTAAAGTATAACCTCGCTCTGGAACTCGAGA
ATGATAGCTTGAAAGGAGGCTGAAAAATCTATTAGCATTTTTAGAATCCA
CTTTGAATTTAAGAAAATGACCCTCTGTAACTGTGACGGTTAGATGAACT
AAAGTAAttattttcttgatttctttaaaaaaaaaagaacattgtCTACA
AAATTGCAAGTTTAagattattttccatttttaattATTCTAGTacatat
atttttgttttaaaatttgttttacaTGCACTTTTTGCCCTAAGTTTGTT
AACGATATTGATTTTTCTAGTATTTGTgtattattgaaagtttgtctttA
GTCTAACTTTAATTTCCTTTTAACCCAAAAGATTGCATGGTGTATATACC
AATTTATGTGCATCAAAAgtaattgattttattttgaagtgagATCGTCC
atgaaaattttgtattttcactttttgaccCTTCATCTCTTTTGAATTTA
GATCTCCATTAATCTCCATTACTACAATTAGTCAAAATCATAATCTAATT
ATCGAGGAAACTTTACTTTGTGACTACTTACtaaaggtttttcaaaattt
attttttggaaattttggtttttatgtCTGCTTTTGTGTAAACTATATAT
CTTTGACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034197XLOC_034197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054217-exon-scaffold_242-1491911889:546004..546183TCONS_00054217-exon-scaffold_242-1491911889:546004..546183Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:546004..546183TCONS_00054217-exon-scaffold_242-1510915933:546004..546183Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:546004..546183TCONS_00054217-exon-scaffold_242-1575043694:546004..546183Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1491911889:546765..546794TCONS_00054217-exon-scaffold_242-1491911889:546765..546794Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:546765..546794TCONS_00054217-exon-scaffold_242-1510915933:546765..546794Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:546765..546794TCONS_00054217-exon-scaffold_242-1575043694:546765..546794Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1491911889:547216..547392TCONS_00054217-exon-scaffold_242-1491911889:547216..547392Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:547216..547392TCONS_00054217-exon-scaffold_242-1510915933:547216..547392Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:547216..547392TCONS_00054217-exon-scaffold_242-1575043694:547216..547392Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1491911889:547544..547603TCONS_00054217-exon-scaffold_242-1491911889:547544..547603Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:547544..547603TCONS_00054217-exon-scaffold_242-1510915933:547544..547603Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:547544..547603TCONS_00054217-exon-scaffold_242-1575043694:547544..547603Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1491911889:548323..548507TCONS_00054217-exon-scaffold_242-1491911889:548323..548507Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:548323..548507TCONS_00054217-exon-scaffold_242-1510915933:548323..548507Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:548323..548507TCONS_00054217-exon-scaffold_242-1575043694:548323..548507Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1491911889:549309..550815TCONS_00054217-exon-scaffold_242-1491911889:549309..550815Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1510915933:549309..550815TCONS_00054217-exon-scaffold_242-1510915933:549309..550815Clytia hemisphaericaexon
TCONS_00054217-exon-scaffold_242-1575043694:549309..550815TCONS_00054217-exon-scaffold_242-1575043694:549309..550815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:546004..550815 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8328	12.5517	16.3693	15.1816	3.58757	6.8774	3.24881	7.43687	1.35419	1.46403	0.882644	1.22187	0.143816	0.773956	0.880951	0.769245	3.99893	3.28581	0.661448	1.191	3.48654	2.18666	6.80493	4.0118	0	0	3.75116	0.620664	2.94709	2.58493
Blast
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BLAST of TCONS_00054217 vs. Swiss-Prot (Human)
Match: CANB1 (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.794e-72
Identity = 111/141 (78.72%), Postives = 131/141 (92.91%), Query Frame = 3 
Query:  207 YVDDEELKRLGKRFRKLDTDNSGTLSIEEFMSLPELQQNPLVQRVIEIFDTDGNKEIDFQEFIEGISQFSVKGDKTQKLRFAFKIYDINQDGFISNGELFTVLRMMVGNNLKEVQLQQIVDKTILQFDTDGDGKISYEEFC 629
            + D +E+KRLGKRF+KLD DNSG+LS+EEFMSLPELQQNPLVQRVI+IFDTDGN E+DF+EFIEG+SQFSVKGDK QKLRFAF+IYD+++DG+ISNGELF VL+MMVGNNLK+ QLQQIVDKTI+  D DGDG+IS+EEFC
Sbjct:   14 HFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFC 154
The following BLAST results are available for this feature:
BLAST of TCONS_00054217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CANB12.794e-7278.72Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
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