TCONS_00054213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054213
Unique NameTCONS_00054213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054213 ID=TCONS_00054213|Name=TCONS_00054213|organism=Clytia hemisphaerica|type=transcript|length=1201bp
ccattcaaaatattttaaagtttgTATTTCATTATTCTTTCAGCGTTATG
CATGAACAAGAAAAAGATAATTGTATTTTAGCTTTACAAAATATACCTAA
AGGTTGCGAGGTTGGCATTGACTATCACTCATGGTATGTAGGTGAACGTT
TCAAAGGTATCTCCAACATACCCCCTGGCATTCATTTTGTCTTTGTTCGA
GTCACAGACAAATATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTGTTTA
CATGAATCCTGGGGAGATTATCTCCAAATCTTTTAAACAGGACGATGAAG
AATTTGAACATATCCAAGACAATATTCCAATTGATGagATGATAGGACTT
TTGGCTCAAATGGCACCCTATCCATACAAAGAATGTCAACTATGGTCACA
ACTTACGTTTCACGTGTCTTCACCCTTATTAAAACGTCTCCAACCGGCAT
CAAAAAAGGTTTGCTCATACACCGAAGTAGCTATAGAAAAAGATAAAGTT
ACAGCAGGGCGTTTAGGTCGAATGTTGATGAAGACAGATACACGGACTAT
TGAGTTAGAATCTAATGATGATGATAATCGAATCAATTTTACGAAGGTTC
CGAAACCTGAATCAATGACTGGACCAGATTTGAGCAAGAATATCATGGAT
TCAAGTGTGTGCTTGGAAGCACTGATCAAAGCTATCCCAGAAGGTGAAGT
TGGGCTACTGGGAGAGATACAACTCGCTTACGTGACATTCATCCTCGGTC
AAGTTTATGATGCATTTGAGCACTGGAAACAATTATTATCGCTTATTGGA
GGTTGCATGGTCGCACTTACTAAAAGAAGctctttttatgaaaagtttat
CGATGTGATCGGACTACAGCTTGACGAAATACCTGAAGACTTTTTCTTGG
AAATCAATCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGgattttttc
caaaatctaaaCGAATGTGACGATTTGACAAATGCCTTATTAAAGAAGTC
TTCGATGATGAAAGAACGTCTCTTTCAGCGTTTTCATTGGGAGTTCAACG
ATGTTTTGGAAGACGAAATGCCTACTATTGTCGAACTGTAATAGTTCATG
GTAAGAGattaatttttaattgtttttttatacttcaaaacttttgtata
tttttttccatATCACTTTTTATTGCAAGAATCATCAGAAATATTAAAGA
A
Run BLAST on NCBI

protein sequence of TCONS_00054213-protein

>TCONS_00054213-protein ID=TCONS_00054213-protein|Name=TCONS_00054213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
IQNILKFVFHYSFSVMHEQEKDNCILALQNIPKGCEVGIDYHSWYVGERF
KGISNIPPGIHFVFVRVTDKYGEMAPRSGFFVYMNPGEIISKSFKQDDEE
FEHIQDNIPIDEMIGLLAQMAPYPYKECQLWSQLTFHVSSPLLKRLQPAS
KKVCSYTEVAIEKDKVTAGRLGRMLMKTDTRTIELESNDDDNRINFTKVP
KPESMTGPDLSKNIMDSSVCLEALIKAIPEGEVGLLGEIQLAYVTFILGQ
VYDAFEHWKQLLSLIGGCMVALTKRSSFYEKFIDVIGLQLDEIPEDFFLE
INPQKNVIFLIFQDFFQNLNECDDLTNALLKKSSMMKERLFQRFHWEFND
VLEDEMPTIVEL
Run BLAST on NCBI

transcript from alignment at scaffold_242:513815..517385+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054213 ID=TCONS_00054213|Name=TCONS_00054213|organism=Clytia hemisphaerica|type=transcript|length=3571bp|location=Sequence derived from alignment at scaffold_242:513815..517385+ (Clytia hemisphaerica)
ccattcaaaatattttaaagtttgTATTTCATTATTCTTTCAGCGTTATG
CATGAACAAGAAAAAGATAATTGTATTTTAGCTTTACAAAATATACCTAA
AGGTTGCGAGGTTGGCATTGACTATCACTCATGGTATGTAGGTGAACGTT
TCAAAGGTATCTCCAACATACCCCCTGGCATTCATTTTGTCTTTGTTCGA
GTCACAGACAAATATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTGTTTA
CATGAATCCTGGGGAGATTATCTCCAAATCTTTTAAACAGGACGATGAAG
AATTTGAACATATCCAAGACAATATTCCAATTGATGGTATGAATTTTCAC
AGTTAATAATTATGTTATTCTTATGAATGATTCCTTGGGAAACAAGATAA
TTTTTCACGGTGCTGGAGATTGTATTCacattatttattttctttactgC
CCTGGTTTTAACTCATCTTTGATCAGATTTTCAGCATATAGTGGTAAATG
GCATCACTTCTCAATGTTGGTCATTTTGTAATAAGAtgcatttttcttta
aaaagatgACCCACATCCAGTAGTGTCAACATTAAGGGCTACCATGAAAG
AGTAAATTGGTAGGCTGGTATTGAAAAACTGCCTCTTTTAACCCATTTCA
TGGCATCACTCCGTAATTTGATTCATTTGATTTAAAATGTGCGTATATAC
AGTCCAACtatgaaaaaaatgttaatCTAGACTTTTTATTCTAATGGGGC
AGCATGCGTTGCGTTGCTCCTACGTCCAGACCTATCAGTACACCCAAAAA
ATTGACCGATCCCATATGATGCGAGTGGTACTTAAATTGTTTATCTAAAG
CTCATTGGTCGTTAATTTACCTCTTCTGCATTTTAATTATCACATTGTCA
TTGTGtaaatagaaaacaacatgGTGGGCAAGTCGACTTTATTAATGGTC
ACACTTACATGGATAATCTGTAAGCAGTTATTAGCCTATAGTGTAAAGGA
ATATGATATCTGTGTATTAGCCAACATCCTTcatattatgtttttttata
gagATGATAGGACTTTTGGCTCAAATGGCACCCTATCCATACAAAGAATG
TCAACTATGGTCACAACTTACGTTTCACGTGTCTTCACCCTTATTAAAAC
GTCTCCAACCGGCATCAAAAAAGGTTTGCTCATACACCGAAGTAGCTATA
GAAAAAGATAAAGTTACAGCAGGGCGTTTAGGTCGAATGTTGATGAAGAC
AGATACACGGACTATTGAGTTAGAATCTAATGATGATGATAATCGAATCA
ATTTTACGAAGGTTCCGAAACCTGAATCAATGACTGGACCAGATTTGAGC
AAGAATATCATGGATTCAAGTGTGTGCTTGGAAGCACTGATCAAAGCTAT
CCCAGAAGGtttgagttgttttttttcatcgtTGGAAAAGAGAAAGACGT
TTTGTGGATCTGAGATCAACGACCTAgaacttttttctttcattcaCAGT
GAGAACAGAGAACATTTATTATGCTAATTTTCTTTTCACGTCTGAAAATG
TTAAGTCATTTTATGAAGTTTATGCAGGTTTATGGTGCAATGCTTGGGAT
ATAAGCTTAGAAAATTACTGCCAGTGAGCAACATCTTTACAATattattt
caatcttttttgttCAGGTGAAGTTGGGCTACTGGGAGAGATACAACTCG
CTTACGTGACATTCATCCTCGGTCAAGGTTTGTGATTCCCCAAGCAATTT
TGAGCACTTGTAAATCAGACTGGTCTTTAGACGGTCTATCAAGGGCCGGT
GAATGACTCGTAATTTACCAAAAGGCAGCTATGAGTCCAGTCATATAGCT
GTTACCAACAAATACTAAAAAACGGCCAGGGACGTTTAAAATTAGATGTT
AAGAAGATGTTAAGGCCGATCTAAAACAAAACTTTGACCGCTACAAGACC
GCTCTTAGTACTGTAATATTTCTTTGGGAGCCACTTTTGTGTATATGAAT
GCAAGTATGAATCATTCCATTAGGGTCATAACTTTCCACAATCCAGGGAg
caagagtggcgccctcccctaccttcggttAGAAAGCTATCGAAAAAGGA
GTCTTCGGGTGGCCTCTGACTGCGgtcacagacttacttactttctTCTA
TGCCTCCTTTTATTTATGACTACTTTGAGTCCTAATAACTTCAGTTCATT
TTTTATATTCTTAGTTTATGATGCATTTGAGCACTGGAAACAATTATTAT
CGCTTATTGGAGGTTGCATGGTCGCACTTACTAAAAGAAGctctttttat
gaaaagtttatCGGTATCAGTCAAAttatttgttactttttttgTGACAC
CGCTTTTTTATGTTATGACCAGACCCCTCAAAGCgtttaacttattttta
aattttggtgattgattcatttcaattttagaCTACACGACTtttactac
acgttttttttatataaggaacacgtttataaggaactcgaggctgaaaa
tggtccaaaaaataaggaattgtttaggaactgctaAGGAACTGctaagg
ctgagaataagaaaagcAAGCAAGttaactttgaggctgaaattctctgt
aaaaataaggaactccaggctcagagcaaagtaaaggttccttataaaaa
aaacgtgtacctgaCAAACGACAGTAAGTTGTTGAAGCGTAAGCTGTGAT
TTTTCTGTGTTTCCAGACAAGGGTCCAAACCAAATCAGCATTTAGTGCAA
TTCTGAACTCATTGATTGATTgacctttttcatttttcactctCATAGAT
GTGATCGGACTACAGCTTGACGAAATACCTGAAGACTTTTTCTTGGAAAT
CAATCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGGtacgaaatattt
ttaaattagcTTTTAACCCCACTTAATTCTGCTCTCTAAGTAAAACAAGT
AGCACTTTCTTAAACATGAAATAACTAGCCCTGTTTGTATTCAGATAGCA
GTATTCAACATGCGACATCTTTATGTCACTGTACTTTTGGAATTGATCAA
TAATTAAGTGTCTACTCTCATATAAAATATATAGATACGGTCAACTTTCT
CTAGCTCGAATCTCTATTATTATTTGAATATTAATTCGattaaactaaaa
tattggtcccctcagctggaaagtggtttactctctgtaattcgaatcct
tCTCCGAATCgaataaagttttttaaaggtcccttgaagatcgaattaga
ggagggacaactgtagaaaatttcaaatctgaTCTATAACCTCAGCTTTT
ATTTTGTTaaggattttttccaaaatctaaaCGAATGTGACGATTTGACA
AATGCCTTATTAAAGAAGTCTTCGATGATGAAAGAACGTCTCTTTCAGCG
TTTTCATTGGGAGTTCAACGATGTTTTGGAAGACGAAATGCCTACTATTG
TCGAACTGTAATAGTTCATGGTAAGAGattaatttttaattgttttttta
tacttcaaaacttttgtatatttttttccatATCACTTTTTATTGCAAGA
ATCATCAGAAATATTAAAGAA

Coding sequence (CDS) from alignment at scaffold_242:513815..517385+

>TCONS_00054213 ID=TCONS_00054213|Name=TCONS_00054213|organism=Clytia hemisphaerica|type=CDS|length=6534bp|location=Sequence derived from alignment at scaffold_242:513815..517385+ (Clytia hemisphaerica)
attcaaaatattttaaagtttgTATTTCATTATTCTTTCAGCGTTATGCA
TGAACAAGAAAAAGATAATTGTATTTTAGCTTTACAAAATATACCTAAAG
GTTGCGAGGTTGGCATTGACTATCACTCATGGTATGTAGGTGAACGTTTC
AAAGGTATCTCCAACATACCCCCTGGCATTCATTTTGTCTTTGTTCGAGT
CACAGACAAATATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTGTTTACA
TGAATCCTGGGGAGATTATCTCCAAATCTTTTAAACAGGACGATGAAGAA
TTTGAACATATCCAAGACAATATTCCAATTGATGagATGATAGGACTTTT
GGCTCAAATGGCACCCTATCCATACAAAGAATGTCAACTATGGTCACAAC
TTACGTTTCACGTGTCTTCACCCTTATTAAAACGTCTCCAACCGGCATCA
AAAAAGGTTTGCTCATACACCGAAGTAGCTATAGAAAAAGATAAAGTTAC
AGCAGGGCGTTTAGGTCGAATGTTGATGAAGACAGATACACGGACTATTG
AGTTAGAATCTAATGATGATGATAATCGAATCAATTTTACGAAGGTTCCG
AAACCTGAATCAATGACTGGACCAGATTTGAGCAAGAATATCATGGATTC
AAGTGTGTGCTTGGAAGCACTGATCAAAGCTATCCCAGAAGGTGAAGTTG
GGCTACTGGGAGAGATACAACTCGCTTACGTGACATTCATCCTCGGTCAA
GTTTATGATGCATTTGAGCACTGGAAACAATTATTATCGCTTATTGGAGG
TTGCATGGTCGCACTTACTAAAAGAAGctctttttatgaaaagtttatCG
ATGTGATCGGACTACAGCTTGACGAAATACCTGAAGACTTTTTCTTGGAA
ATCAATCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGgattttttcca
aaatctaaaCGAATGTGACGATTTGACAAATGCCTTATTAAAGAAGTCTT
CGATGATGAAAGAACGTCTCTTTCAGCGTTTTCATTGGGAGTTCAACGAT
GTTTTGGAAGACGAAATGCCTACTATTGTCGAACTGTAAattcaaaatat
tttaaagtttgTATTTCATTATTCTTTCAGCGTTATGCATGAACAAGAAA
AAGATAATTGTATTTTAGCTTTACAAAATATACCTAAAGGTTGCGAGGTT
GGCATTGACTATCACTCATGGTATGTAGGTGAACGTTTCAAAGGTATCTC
CAACATACCCCCTGGCATTCATTTTGTCTTTGTTCGAGTCACAGACAAAT
ATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTGTTTACATGAATCCTGGG
GAGATTATCTCCAAATCTTTTAAACAGGACGATGAAGAATTTGAACATAT
CCAAGACAATATTCCAATTGATGagATGATAGGACTTTTGGCTCAAATGG
CACCCTATCCATACAAAGAATGTCAACTATGGTCACAACTTACGTTTCAC
GTGTCTTCACCCTTATTAAAACGTCTCCAACCGGCATCAAAAAAGGTTTG
CTCATACACCGAAGTAGCTATAGAAAAAGATAAAGTTACAGCAGGGCGTT
TAGGTCGAATGTTGATGAAGACAGATACACGGACTATTGAGTTAGAATCT
AATGATGATGATAATCGAATCAATTTTACGAAGGTTCCGAAACCTGAATC
AATGACTGGACCAGATTTGAGCAAGAATATCATGGATTCAAGTGTGTGCT
TGGAAGCACTGATCAAAGCTATCCCAGAAGGTGAAGTTGGGCTACTGGGA
GAGATACAACTCGCTTACGTGACATTCATCCTCGGTCAAGTTTATGATGC
ATTTGAGCACTGGAAACAATTATTATCGCTTATTGGAGGTTGCATGGTCG
CACTTACTAAAAGAAGctctttttatgaaaagtttatCGATGTGATCGGA
CTACAGCTTGACGAAATACCTGAAGACTTTTTCTTGGAAATCAATCCTCA
AAAGAATGTTATCTTCCTGATTTTCCAGgattttttccaaaatctaaaCG
AATGTGACGATTTGACAAATGCCTTATTAAAGAAGTCTTCGATGATGAAA
GAACGTCTCTTTCAGCGTTTTCATTGGGAGTTCAACGATGTTTTGGAAGA
CGAAATGCCTACTATTGTCGAACTGTAAattcaaaatattttaaagtttg
TATTTCATTATTCTTTCAGCGTTATGCATGAACAAGAAAAAGATAATTGT
ATTTTAGCTTTACAAAATATACCTAAAGGTTGCGAGGTTGGCATTGACTA
TCACTCATGGTATGTAGGTGAACGTTTCAAAGGTATCTCCAACATACCCC
CTGGCATTCATTTTGTCTTTGTTCGAGTCACAGACAAATATGGTGAAATG
GCGCCTCGTTCTGGTTTCTTTGTTTACATGAATCCTGGGGAGATTATCTC
CAAATCTTTTAAACAGGACGATGAAGAATTTGAACATATCCAAGACAATA
TTCCAATTGATGagATGATAGGACTTTTGGCTCAAATGGCACCCTATCCA
TACAAAGAATGTCAACTATGGTCACAACTTACGTTTCACGTGTCTTCACC
CTTATTAAAACGTCTCCAACCGGCATCAAAAAAGGTTTGCTCATACACCG
AAGTAGCTATAGAAAAAGATAAAGTTACAGCAGGGCGTTTAGGTCGAATG
TTGATGAAGACAGATACACGGACTATTGAGTTAGAATCTAATGATGATGA
TAATCGAATCAATTTTACGAAGGTTCCGAAACCTGAATCAATGACTGGAC
CAGATTTGAGCAAGAATATCATGGATTCAAGTGTGTGCTTGGAAGCACTG
ATCAAAGCTATCCCAGAAGGTGAAGTTGGGCTACTGGGAGAGATACAACT
CGCTTACGTGACATTCATCCTCGGTCAAGTTTATGATGCATTTGAGCACT
GGAAACAATTATTATCGCTTATTGGAGGTTGCATGGTCGCACTTACTAAA
AGAAGctctttttatgaaaagtttatCGATGTGATCGGACTACAGCTTGA
CGAAATACCTGAAGACTTTTTCTTGGAAATCAATCCTCAAAAGAATGTTA
TCTTCCTGATTTTCCAGgattttttccaaaatctaaaCGAATGTGACGAT
TTGACAAATGCCTTATTAAAGAAGTCTTCGATGATGAAAGAACGTCTCTT
TCAGCGTTTTCATTGGGAGTTCAACGATGTTTTGGAAGACGAAATGCCTA
CTATTGTCGAACTGTAAattcaaaatattttaaagtttgTATTTCATTAT
TCTTTCAGCGTTATGCATGAACAAGAAAAAGATAATTGTATTTTAGCTTT
ACAAAATATACCTAAAGGTTGCGAGGTTGGCATTGACTATCACTCATGGT
ATGTAGGTGAACGTTTCAAAGGTATCTCCAACATACCCCCTGGCATTCAT
TTTGTCTTTGTTCGAGTCACAGACAAATATGGTGAAATGGCGCCTCGTTC
TGGTTTCTTTGTTTACATGAATCCTGGGGAGATTATCTCCAAATCTTTTA
AACAGGACGATGAAGAATTTGAACATATCCAAGACAATATTCCAATTGAT
GagATGATAGGACTTTTGGCTCAAATGGCACCCTATCCATACAAAGAATG
TCAACTATGGTCACAACTTACGTTTCACGTGTCTTCACCCTTATTAAAAC
GTCTCCAACCGGCATCAAAAAAGGTTTGCTCATACACCGAAGTAGCTATA
GAAAAAGATAAAGTTACAGCAGGGCGTTTAGGTCGAATGTTGATGAAGAC
AGATACACGGACTATTGAGTTAGAATCTAATGATGATGATAATCGAATCA
ATTTTACGAAGGTTCCGAAACCTGAATCAATGACTGGACCAGATTTGAGC
AAGAATATCATGGATTCAAGTGTGTGCTTGGAAGCACTGATCAAAGCTAT
CCCAGAAGGTGAAGTTGGGCTACTGGGAGAGATACAACTCGCTTACGTGA
CATTCATCCTCGGTCAAGTTTATGATGCATTTGAGCACTGGAAACAATTA
TTATCGCTTATTGGAGGTTGCATGGTCGCACTTACTAAAAGAAGctcttt
ttatgaaaagtttatCGATGTGATCGGACTACAGCTTGACGAAATACCTG
AAGACTTTTTCTTGGAAATCAATCCTCAAAAGAATGTTATCTTCCTGATT
TTCCAGgattttttccaaaatctaaaCGAATGTGACGATTTGACAAATGC
CTTATTAAAGAAGTCTTCGATGATGAAAGAACGTCTCTTTCAGCGTTTTC
ATTGGGAGTTCAACGATGTTTTGGAAGACGAAATGCCTACTATTGTCGAA
CTGTAAattcaaaatattttaaagtttgTATTTCATTATTCTTTCAGCGT
TATGCATGAACAAGAAAAAGATAATTGTATTTTAGCTTTACAAAATATAC
CTAAAGGTTGCGAGGTTGGCATTGACTATCACTCATGGTATGTAGGTGAA
CGTTTCAAAGGTATCTCCAACATACCCCCTGGCATTCATTTTGTCTTTGT
TCGAGTCACAGACAAATATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTG
TTTACATGAATCCTGGGGAGATTATCTCCAAATCTTTTAAACAGGACGAT
GAAGAATTTGAACATATCCAAGACAATATTCCAATTGATGagATGATAGG
ACTTTTGGCTCAAATGGCACCCTATCCATACAAAGAATGTCAACTATGGT
CACAACTTACGTTTCACGTGTCTTCACCCTTATTAAAACGTCTCCAACCG
GCATCAAAAAAGGTTTGCTCATACACCGAAGTAGCTATAGAAAAAGATAA
AGTTACAGCAGGGCGTTTAGGTCGAATGTTGATGAAGACAGATACACGGA
CTATTGAGTTAGAATCTAATGATGATGATAATCGAATCAATTTTACGAAG
GTTCCGAAACCTGAATCAATGACTGGACCAGATTTGAGCAAGAATATCAT
GGATTCAAGTGTGTGCTTGGAAGCACTGATCAAAGCTATCCCAGAAGGTG
AAGTTGGGCTACTGGGAGAGATACAACTCGCTTACGTGACATTCATCCTC
GGTCAAGTTTATGATGCATTTGAGCACTGGAAACAATTATTATCGCTTAT
TGGAGGTTGCATGGTCGCACTTACTAAAAGAAGctctttttatgaaaagt
ttatCGATGTGATCGGACTACAGCTTGACGAAATACCTGAAGACTTTTTC
TTGGAAATCAATCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGgattt
tttccaaaatctaaaCGAATGTGACGATTTGACAAATGCCTTATTAAAGA
AGTCTTCGATGATGAAAGAACGTCTCTTTCAGCGTTTTCATTGGGAGTTC
AACGATGTTTTGGAAGACGAAATGCCTACTATTGTCGAACTGTAAattca
aaatattttaaagtttgTATTTCATTATTCTTTCAGCGTTATGCATGAAC
AAGAAAAAGATAATTGTATTTTAGCTTTACAAAATATACCTAAAGGTTGC
GAGGTTGGCATTGACTATCACTCATGGTATGTAGGTGAACGTTTCAAAGG
TATCTCCAACATACCCCCTGGCATTCATTTTGTCTTTGTTCGAGTCACAG
ACAAATATGGTGAAATGGCGCCTCGTTCTGGTTTCTTTGTTTACATGAAT
CCTGGGGAGATTATCTCCAAATCTTTTAAACAGGACGATGAAGAATTTGA
ACATATCCAAGACAATATTCCAATTGATGagATGATAGGACTTTTGGCTC
AAATGGCACCCTATCCATACAAAGAATGTCAACTATGGTCACAACTTACG
TTTCACGTGTCTTCACCCTTATTAAAACGTCTCCAACCGGCATCAAAAAA
GGTTTGCTCATACACCGAAGTAGCTATAGAAAAAGATAAAGTTACAGCAG
GGCGTTTAGGTCGAATGTTGATGAAGACAGATACACGGACTATTGAGTTA
GAATCTAATGATGATGATAATCGAATCAATTTTACGAAGGTTCCGAAACC
TGAATCAATGACTGGACCAGATTTGAGCAAGAATATCATGGATTCAAGTG
TGTGCTTGGAAGCACTGATCAAAGCTATCCCAGAAGGTGAAGTTGGGCTA
CTGGGAGAGATACAACTCGCTTACGTGACATTCATCCTCGGTCAAGTTTA
TGATGCATTTGAGCACTGGAAACAATTATTATCGCTTATTGGAGGTTGCA
TGGTCGCACTTACTAAAAGAAGctctttttatgaaaagtttatCGATGTG
ATCGGACTACAGCTTGACGAAATACCTGAAGACTTTTTCTTGGAAATCAA
TCCTCAAAAGAATGTTATCTTCCTGATTTTCCAGgattttttccaaaatc
taaaCGAATGTGACGATTTGACAAATGCCTTATTAAAGAAGTCTTCGATG
ATGAAAGAACGTCTCTTTCAGCGTTTTCATTGGGAGTTCAACGATGTTTT
GGAAGACGAAATGCCTACTATTGTCGAACTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034196XLOC_034196Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054213-proteinTCONS_00054213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054213-exon-scaffold_242-1491911889:513815..514150TCONS_00054213-exon-scaffold_242-1491911889:513815..514150Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:513815..514150TCONS_00054213-exon-scaffold_242-1510915933:513815..514150Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:513815..514150TCONS_00054213-exon-scaffold_242-1575043694:513815..514150Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1491911889:514866..515222TCONS_00054213-exon-scaffold_242-1491911889:514866..515222Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:514866..515222TCONS_00054213-exon-scaffold_242-1510915933:514866..515222Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:514866..515222TCONS_00054213-exon-scaffold_242-1575043694:514866..515222Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1491911889:515482..515541TCONS_00054213-exon-scaffold_242-1491911889:515482..515541Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:515482..515541TCONS_00054213-exon-scaffold_242-1510915933:515482..515541Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:515482..515541TCONS_00054213-exon-scaffold_242-1575043694:515482..515541Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1491911889:516029..516127TCONS_00054213-exon-scaffold_242-1491911889:516029..516127Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:516029..516127TCONS_00054213-exon-scaffold_242-1510915933:516029..516127Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:516029..516127TCONS_00054213-exon-scaffold_242-1575043694:516029..516127Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1491911889:516613..516701TCONS_00054213-exon-scaffold_242-1491911889:516613..516701Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:516613..516701TCONS_00054213-exon-scaffold_242-1510915933:516613..516701Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:516613..516701TCONS_00054213-exon-scaffold_242-1575043694:516613..516701Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1491911889:517126..517385TCONS_00054213-exon-scaffold_242-1491911889:517126..517385Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1510915933:517126..517385TCONS_00054213-exon-scaffold_242-1510915933:517126..517385Clytia hemisphaericaexon
TCONS_00054213-exon-scaffold_242-1575043694:517126..517385TCONS_00054213-exon-scaffold_242-1575043694:517126..517385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:513815..517385 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0455	32.3822	17.6754	14.7769	16.3498	12.1739	14.8918	14.2974	11.3196	11.2576	7.42585	8.36423	5.5882	5.85871	6.44654	6.91812	13.6923	11.5743	2.11196	2.21002	4.39064	6.12243	21.478	20.1187	11.2439	12.845	3.11341	4.18689	11.9085	13.0227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007946AAR2
IPR033648AAR2_C
IPR033647Aar2_N
Blast
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BLAST of TCONS_00054213 vs. Swiss-Prot (Human)
Match: AAR2 (Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 9.691e-58
Identity = 122/366 (33.33%), Postives = 192/366 (52.46%), Query Frame = 3 
Query:   66 DNCILALQNIPKGCEVGIDYHSWYVGERFKGISNIPPGIHFVFVRVTDKYG--EMAPRSGFFVYMNPGEIISKSFKQDDEEFEHIQDNIPIDEMIGLLAQM-------APYPYKECQLWSQLTFHVSSPLLKRLQPASKKVCSYTEV-AIEKDKVTAGRLGRMLMKTD----------TRTIELESNDDDNRINFTKVPK---PESMTGPDLSKNIMDSSVCLEALI-KAIPEGEVGLLGEIQLAYVTFILGQVYDAFEHWKQLLSLIGGCMVALTKRSSFYEKFIDVIGLQLDEIPEDFFLEINPQKNVIFLIFQDFFQNLNECDDLTNALL-KKSSMMKERLFQRFHWEFNDVLEDEMPTIVEL 1088
            +   + + N+PKG E GIDY+SW VG +F+G+  IPPGIHF+     DK    E+ PR GFF+ ++   +    +    EE +      P  E+  + A +        PYPY   + W  LT  +S   +++LQP ++++C++++V  +   K T  R+G+ L +             R  E++       I F+++P    PE  T  +++K+ MD S  LE ++ K  P     +LGE+Q A+V F+LG VY+AFEHWK+LL+L+     A+ K  + Y   I ++  QL EIP DFF++I  Q N +    Q FF   + C    +A L KK+   +  L ++F W+F    ED  P +VEL
Sbjct:   17 EGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVD--LSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGIECKSYQEGLARLPEMKPRAG-TEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLNKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFS--SACSIAVDATLRKKAEKFQAHLTKKFRWDFAAEPEDCAPVVVEL 377
The following BLAST results are available for this feature:
BLAST of TCONS_00054213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AAR29.691e-5833.33Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 ... [more]
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