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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054212 ID=TCONS_00054212|Name=TCONS_00054212|organism=Clytia hemisphaerica|type=transcript|length=1666bp
ATCGAGCGTAAGTTTGATAAGGTGTGCAAAAATATCGTACTGGAAGGTGG
TCGTCCCGTTCGATGGACGCATCAAAATGGACAGGCTTTTTCTGCTGACA
AGAATCTGGAAAGCCTTTTTGTAAACAGAAATTTGAGCTTAGGTTATGTG
CTGTATAAAATGTCATTTGAAACATGATCTGGCCAAGAAATAATCAATGC
TGAGCAAAGTAATCTACTGTATGAAATATGAATGAACAGAAGGAGCAAGA
TCTGGTAAAAAATGAAGACACAAAAAAGAAGACTGAATTTCATTGCACTA
TTTGTGACAAATATTATGCTTCATACAAGAGTTTTGGAAATCATACCAGA
TCTTATCACAGTGTGAATAAACAAAAAGCACAATGTACATTCTGTGGAAA
TTGTTTCACACGAAAAGACAATTTACAGCAACATATCAGACTTTTCCACA
GTGAAATGCAAACTACATTTGCGTGCAAATTTTGTGGCGAGTCATACTCC
AGTCGAAATATGCTATCAAAGCATAAACAAGACTGTGTCAAAAAACTAAA
TTCAACATATGATGAATCATacaataagaaaaataatgagCCAAAGACTA
TAATTCTTTTCACTCCTACTCCTAAAGGTGCTATACCAGTTTCCCTTCAA
CCACCTCAAGAGTACAAAACTGTAAAAGTTGAAAACACAACAATCCTGGA
ACCACCCAAAAAACGAAGGAGAAAACGTGAATATAACATTACTAGACCCA
AAGATTATGATGAAAACAATAATTCTAATAACACTGTTGGATATTACACA
CACCCTGTAACAAAAGTAGAAGAAAATAATAACTCTATTGAAATAATGGA
ATTTCCTAAAGAAGAACCTCCAGAAAGCAAGGCCTTGGATTGTACTGTTT
GTAACATTACGTTTCTAAGTGAAAAAGACTATTTGTCTCATAAACCATTT
TGTGATGATGGTCAGTTCTGAACTGAAGATTGAATTTTCATAGTGAAAGA
TTATATATTTTATACCTATTTTTGTATGTATTATTTTTAAACCTCAAATT
ATTTACAACTttccttatttttaccattattAAAACTTCCCAATATAGCT
CAAAATAGGGCTGAACTTAATGTTGATTTACCTTCACCTGATTTTTGAGG
TGGGTTGGTTTGAAAAAagatcttctttaaaatggtgATAAAATTTTCTG
GATTGGCAGGTTTTAAGGTAAGGTCTGTCGGGTATTAATTacagattttt
aaaagttttatctcAGCAACAATATTTAACTGTCAAGTGAAAGCATGCCT
TTTACTAAGTTATTGATAGTTTAGTTTAAATCAAAAGACACAATGTTTTC
CAAGTTCTTCTTAACAGCTTGAATTATATACTCATGTAGATGTAGGATTT
TCATCAAACATGCTTTTGATGAGCATTTCCAATAGTGCTAGCTGTTACAT
TCTAAACTTGTTAAATAATAATTTAGCTTTTCTTGCTATGAAACTCTTCA
GCTTGTAAGTATTTTTACGAAGTTTTACATATCGGTATATTTTTGGCTAT
AATTCTTTGTATTCTTTTTTTAAGATGGATTCTATTTTTTGTAACATATT
TTGCTATCATCATTAAAAATCATTataatcaaaatatattttatatacAA
TTTTTATAGAGATTAG Run BLAST on NCBI transcript from alignment at scaffold_242:507254..512292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054212 ID=TCONS_00054212|Name=TCONS_00054212|organism=Clytia hemisphaerica|type=transcript|length=5039bp|location=Sequence derived from alignment at scaffold_242:507254..512292+ (Clytia hemisphaerica)
ATCGAGCGTAAGTTTGATAAGGTGTGCAAAAATATCGTACTGGAAGGTGG
TCGTCCCGTTCGATGGACGCATCAAAATGGACAGGCTTTTTCTGCTGACA
AGAATCTGGAAAGCCTTTTTGTAAACAGAAATTTGAGGTATTACGTAGTA
ACCTTTCAGGTGTTTTTCTGCTAATTTGATACACAAGCTACACTGGTAAA
ACCAACAGCAGCTAGCTAAGGACCCACATGACACGGTATAGGCCAATCAT
TTTCAGGCCATTCAGCCATTTTGAACTTGGAAAAGTCCTAAACATAACCC
GAACTGGCCCGTGGCGCGGGGAAGGATGTGCCGCTGGTCCATGCTGGTTA
GAGAGGTTTGTTCCAGCAGGTAGGTTTgcagcaaaaaaatgcaaaaatag
aaaattcagtcCTTCTTACGTTCTTAGCTTAGGGTGCCTTAGGCCATGCA
TGGCCAGTGCCACCAAAACGTTTTacttttattcaaaatgtccGTGACCA
AGCTTTTAGACTTGAGTTcggtcaatttgagggtgctgattcggaattta
aatgttaccaagcttgaatgaaaacccgcagtttttgcgtaacTTGCGAT
CTGTTGCGATTTTAGGCAAAATATTGTAAGGcgatcatcgaaaaaatgct
ctgttcgcgtcacaacgggtgttaaaaatgcatgcgggcggacgggcgaT
AAAAAACATTCCcggtttttttaatcacgccagtaactcaggggcaGGTG
TTACAGTAatgcgagcaaaacaatttttcgatggtcgtcagagcaattga
gaaaaaagctaactttaaaagaaaaaattgcttttcccggaaaattagcg
gaaaatttgatgcgggcgggtgacgcgaatatagaacaatttttcaatga
ccgtctaagccctgaaaattcatgattttttgggggtcttcaaaatcaaa
atcaaaaaagacttataaccacgtgatagagctcttcaaactgagcaaaa
aatgtataatatcaaagtctcaacttttctagataaaaaattccctgttt
tcaatcaatttttgaccataaaatctatggtcaaaaattgattgaaaatt
ttatgcaaaattatataaatatataaaaaagttggtcccagacattttga
attttttctttatttttgaaacattaacAATCCACTGGCCACGGCCTACC
TTCATTGtggaaatttgggaaaaaagaggtaaattttggggaaaattttt
gaaatttagtccCATCTGCATAGGTAAAAATCTTGAAGCTTCCTCTTCAT
TATGGATATATTGGCACTGTTGTATAGCGGTCATTGTGATCTTGGTTGCT
GCACGGGCGACTGGAGCTGGAGGTTTGATTCctactcgcagcggttcact
tgggttggcaagtgaatgaacttttgcctgggtcaacccatgccatgtga
ggggaattgggtagtcagtccaaggtgctgacgaggcgctcattgaaagc
gtctatagttccgaaaataggcctcaaagcctcctgcaactcaaccaaat
agaaatagaaatggcAAAACACAATGATCTGCAAGACACATTAAACTTTC
TCTTATTTTTGATGACAGCTTAGGTTATGTGCTGTATAAAATGTCATTTG
AAACATGATCTGGCCAAGAAATAATCAATGCTGAGCAAAGTAATCTACTG
TGTAAGTTCCTTTTCATCATTTTCTCTGTGGATTTTGTAAGAGTCCACAC
TGTAAAGAAAGTATACTTTCTAATGTACAGTAGCAGTAAATATTCTAATT
TTAAGGTTACAGGACAAATTTGATTTCCATTTGCATATCTTAGATAGTTT
ATTACAGGCCGTGCAAGCCTGAGCTTTTTGCCATTTGTCCTTTTCAGAGT
CATCGGGATAAGTACCCAAGTATTTGAAATCATTTACAACTTTAATTTTC
TCCCCTGATGAGAAAAAATATCTGTGGTTGGCTGAAATTGAGCACTTCAG
TTTTTTTGGTATTTAAGGGCCCCCCCTTAGCGGTCGTGAATGGGGCTTAA
TTTAACTTTgtgaatgaatgaaaatttttttaaaaattgcatgAATGCAT
GAATTGGAAACctttgcgtgaacaaaaattacgtgaattgcaaaaaaaac
attGCGTAAATGCTTGAATTTGGGAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctgggggggggggg
gcttcttTAAGTGGAGAGCAACTTTGGATGCGTTAGCTTCTGTGTTGAAT
TAGAAGTTAATCAATCAAGTTTGAGGTAAGAGCAATGTCATCTGTAAAGT
CAAGATCAGTCTAGATCAGTAACTTTAACTTCGGGTATTCATCAACCGTA
AGACTATTGCTGTTTTTTTACATTACTTGTCTCCTTATATAAtcaaaatc
attacaaaatgagcaaaaaaactGCCTCGTATTGCTTGAGATGTAGCCAA
AATTCCCTAAGCATTTCCTAATCAGGCAATAAAAGAAAGCCTGGAAAATT
CCTAAATAGGAAATTAAGATCTATAGAAAATTTAGGAAAGTTTTACTGAC
TGGTTGCACAAGCATATTTTGGTGCTCTCCACCATTTGGTCtctgggagg
taaacaaacctgtttttgcctgcatttccttagggaaagttgtgtttttt
ttagcttttcttaagtCATCGAACAGAATCCCTTTTATATATATTCTATC
TATATTTATGATATTATTATATACCGTGACTTTGTGTATTCCTTGTCTAA
TTTCGTCATAACAACTATTTGTTCTGCAAAGTAGTAagagtgattttttc
aaaaacattaaaagataGTATCAccctgaaaaaaatattggtatATATTA
AGTCTAAGAGTTAAATAAGAAAGCTGAAAACCcacactttccctaacccc
ttgcaggcaaaaacgtgtttttttactcactcattttttggaaaaacttt
cCCGAATTCAGAAAATCAGAATTCGGGCTagaagattttttgtttaatgc
tttaaaaaatttctgttaatttttttttgtggtATTAAATGTATTCATTA
CAAAGAAAGTTCTTGCACTCCACCAAACATCCTAAATAGCTGTTTGAAAT
TAGCCTAAAACTCAAACTTGattatcaaaaaaacttttgaaattttcaca
ttttttcgtCACCAATTTGAGAATTGAGAAAGAACAATCACCAAGAACGG
TGGTAAAACAGTATATTCTTGAAGAATACCCTGTTTGGGTTAAAGAAAAA
CTTCAGGTGGGGTTGGGGTGGGGTCAGATCAGACTGGTTGATTTTCACTT
TTCTGTCTTTTTCAATCTTCTTTAATCTTTTTTACACTGTAGAAGAAAAA
TCTAAAAGGTAACGTGGAGAAATTAGTTGAGTGAAATTTATAATCTTTAT
TGTTTTGTGtatatatgttttattttgattcaatCAATTTTAGATGAAAT
ATGAATGAACAGAAGGAGCAAGATCTGGTAAAAAATGAAGACACAAAAAA
GAAGACTGAATTTCATTGCACTATTTGTGACAAATATTATGCTTCATACA
AGAGTTTTGGAAATCATACCAGATCTTATCACAGTGTGAATAAACAAAAA
GCACAATGTACATTCTGTGGAAATTGTTTCACACGAAAAGACAATTTACA
GCAACATATCAGACTTTTCCACAGTGAAATGCAAACTACATTTGCGTGCA
AATTTTGTGGCGAGTCATACTCCAGTCGAAATATGCTATCAAAGCATAAA
CAAGACTGTGTCAAAAAACTAAATTCAACATATGATGAATCATacaataa
gaaaaataatgagCCAAAGACTATAATTCTTTTCACTCCTACTCCTAAAG
GTGCTATACCAGTTTCCCTTCAACCACCTCAAGAGTACAAAACTGTAAAA
GTTGAAAACACAACAATCCTGGAACCACCCAAAAAACGAAGGAGAAAACG
TGAATATAACATTACTAGACCCAAAGATTATGATGAAAACAATAATTCTA
ATAACACTGTTGGATATTACACACACCCTGTAACAAAAGTAGAAGAAAAT
AATAACTCTATTGAAATAATGGAATTTCCTAAAGAAGAACCTCCAGAAAG
CAAGGCCTTGGATTGTACTGTTTGTAACATTACGTTTCTAAGTGAAAAAG
ACTATTTGTCTCATAAACCATTTTGTGATGATGGTCAGTTCTGAACTGAA
GATTGAATTTTCATAGTGAAAGATTATATATTTTATACCTATTTTTGTAT
GTATTATTTTTAAACCTCAAATTATTTACAACTttccttatttttaccat
tattAAAACTTCCCAATATAGCTCAAAATAGGGCTGAACTTAATGTTGAT
TTACCTTCACCTGATTTTTGAGGTGGGTTGGTTTGAAAAAagatcttctt
taaaatggtgATAAAATTTTCTGGATTGGCAGGTTTTAAGGTAAGGTCTG
TCGGGTATTAATTacagatttttaaaagttttatctcAGCAACAATATTT
AACTGTCAAGTGAAAGCATGCCTTTTACTAAGTTATTGATAGTTTAGTTT
AAATCAAAAGACACAATGTTTTCCAAGTTCTTCTTAACAGCTTGAATTAT
ATACTCATGTAGATGTAGGATTTTCATCAAACATGCTTTTGATGAGCATT
TCCAATAGTGCTAGCTGTTACATTCTAAACTTGTTAAATAATAATTTAGC
TTTTCTTGCTATGAAACTCTTCAGCTTGTAAGTATTTTTACGAAGTTTTA
CATATCGGTATATTTTTGGCTATAATTCTTTGTATTCTTTTTTTAAGATG
GATTCTATTTTTTGTAACATATTTTGCTATCATCATTAAAAATCATTata
atcaaaatatattttatatacAATTTTTATAGAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054212-exon-scaffold_242-1491911889:507254..507390 | TCONS_00054212-exon-scaffold_242-1491911889:507254..507390 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1510915933:507254..507390 | TCONS_00054212-exon-scaffold_242-1510915933:507254..507390 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1575043694:507254..507390 | TCONS_00054212-exon-scaffold_242-1575043694:507254..507390 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1491911889:508872..508954 | TCONS_00054212-exon-scaffold_242-1491911889:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1510915933:508872..508954 | TCONS_00054212-exon-scaffold_242-1510915933:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1575043694:508872..508954 | TCONS_00054212-exon-scaffold_242-1575043694:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1491911889:510847..512292 | TCONS_00054212-exon-scaffold_242-1491911889:510847..512292 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1510915933:510847..512292 | TCONS_00054212-exon-scaffold_242-1510915933:510847..512292 | Clytia hemisphaerica | exon |
| TCONS_00054212-exon-scaffold_242-1575043694:510847..512292 | TCONS_00054212-exon-scaffold_242-1575043694:510847..512292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:507254..512292 + |
Blast
The following BLAST results are available for this feature:
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