|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054211 ID=TCONS_00054211|Name=TCONS_00054211|organism=Clytia hemisphaerica|type=transcript|length=1924bp
TAAAGGTCACAAAGCATCGTACCTTGATCGAGCGTAAGTTTGATAAGGTG
TGCAAAAATATCGTACTGGAAGGTGGTCGTCCCGTTCGATGGACGCATCA
AAATGGACAGGCTTTTTCTGCTGACAAGAATCTGGAAAGCCTTTTTGTAA
ACAGAAATTTGAGGTATTACGTAGTAACCTTTCAGGTGTTTTTCTGCTAA
TTTGATACACAAGCTACACTGGTAAAACCAACAGCAGCTAGCTAAGGACC
CACATGACACGGTATAGGCCAATCATTTTCAGGCCATTCAGCCATTTTGA
ACTTGGAAAAGTCCTAAACATAACCCGAACTGGCCCGTGGCGCGGGGAAG
GATGTGCCGCTGGTCCATGCTGGTTAGAGAGGTTTGTTCCAGCAGCTTAG
GTTATGTGCTGTATAAAATGTCATTTGAAACATGATCTGGCCAAGAAATA
ATCAATGCTGAGCAAAGTAATCTACTGTATGAAATATGAATGAACAGAAG
GAGCAAGATCTGGTAAAAAATGAAGACACAAAAAAGAAGACTGAATTTCA
TTGCACTATTTGTGACAAATATTATGCTTCATACAAGAGTTTTGGAAATC
ATACCAGATCTTATCACAGTGTGAATAAACAAAAAGCACAATGTACATTC
TGTGGAAATTGTTTCACACGAAAAGACAATTTACAGCAACATATCAGACT
TTTCCACAGTGAAATGCAAACTACATTTGCGTGCAAATTTTGTGGCGAGT
CATACTCCAGTCGAAATATGCTATCAAAGCATAAACAAGACTGTGTCAAA
AAACTAAATTCAACATATGATGAATCATacaataagaaaaataatgagCC
AAAGACTATAATTCTTTTCACTCCTACTCCTAAAGGTGCTATACCAGTTT
CCCTTCAACCACCTCAAGAGTACAAAACTGTAAAAGTTGAAAACACAACA
ATCCTGGAACCACCCAAAAAACGAAGGAGAAAACGTGAATATAACATTAC
TAGACCCAAAGATTATGATGAAAACAATAATTCTAATAACACTGTTGGAT
ATTACACACACCCTGTAACAAAAGTAGAAGAAAATAATAACTCTATTGAA
ATAATGGAATTTCCTAAAGAAGAACCTCCAGAAAGCAAGGCCTTGGATTG
TACTGTTTGTAACATTACGTTTCTAAGTGAAAAAGACTATTTGTCTCATA
AACCATTTTGTGATGATGGTCAGTTCTGAACTGAAGATTGAATTTTCATA
GTGAAAGATTATATATTTTATACCTATTTTTGTATGTATTATTTTTAAAC
CTCAAATTATTTACAACTttccttatttttaccattattAAAACTTCCCA
ATATAGCTCAAAATAGGGCTGAACTTAATGTTGATTTACCTTCACCTGAT
TTTTGAGGTGGGTTGGTTTGAAAAAagatcttctttaaaatggtgATAAA
ATTTTCTGGATTGGCAGGTTTTAAGGTAAGGTCTGTCGGGTATTAATTac
agatttttaaaagttttatctcAGCAACAATATTTAACTGTCAAGTGAAA
GCATGCCTTTTACTAAGTTATTGATAGTTTAGTTTAAATCAAAAGACACA
ATGTTTTCCAAGTTCTTCTTAACAGCTTGAATTATATACTCATGTAGATG
TAGGATTTTCATCAAACATGCTTTTGATGAGCATTTCCAATAGTGCTAGC
TGTTACATTCTAAACTTGTTAAATAATAATTTAGCTTTTCTTGCTATGAA
ACTCTTCAGCTTGTAAGTATTTTTACGAAGTTTTACATATCGGTATATTT
TTGGCTATAATTCTTTGTATTCTTTTTTTAAGATGGATTCTATTTTTTGT
AACATATTTTGCTATCATCATTAAAAATCATTataatcaaaatatatttt
atatacAATTTTTATAGAGATTAG Run BLAST on NCBI protein sequence of TCONS_00054211-protein >TCONS_00054211-protein ID=TCONS_00054211-protein|Name=TCONS_00054211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MNEQKEQDLVKNEDTKKKTEFHCTICDKYYASYKSFGNHTRSYHSVNKQK
AQCTFCGNCFTRKDNLQQHIRLFHSEMQTTFACKFCGESYSSRNMLSKHK
QDCVKKLNSTYDESYNKKNNEPKTIILFTPTPKGAIPVSLQPPQEYKTVK
VENTTILEPPKKRRRKREYNITRPKDYDENNNSNNTVGYYTHPVTKVEEN
NNSIEIMEFPKEEPPESKALDCTVCNITFLSEKDYLSHKPFCDDGQF Run BLAST on NCBI transcript from alignment at scaffold_242:507228..512292+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054211 ID=TCONS_00054211|Name=TCONS_00054211|organism=Clytia hemisphaerica|type=transcript|length=5065bp|location=Sequence derived from alignment at scaffold_242:507228..512292+ (Clytia hemisphaerica)
TAAAGGTCACAAAGCATCGTACCTTGATCGAGCGTAAGTTTGATAAGGTG
TGCAAAAATATCGTACTGGAAGGTGGTCGTCCCGTTCGATGGACGCATCA
AAATGGACAGGCTTTTTCTGCTGACAAGAATCTGGAAAGCCTTTTTGTAA
ACAGAAATTTGAGGTATTACGTAGTAACCTTTCAGGTGTTTTTCTGCTAA
TTTGATACACAAGCTACACTGGTAAAACCAACAGCAGCTAGCTAAGGACC
CACATGACACGGTATAGGCCAATCATTTTCAGGCCATTCAGCCATTTTGA
ACTTGGAAAAGTCCTAAACATAACCCGAACTGGCCCGTGGCGCGGGGAAG
GATGTGCCGCTGGTCCATGCTGGTTAGAGAGGTTTGTTCCAGCAGGTAGG
TTTgcagcaaaaaaatgcaaaaatagaaaattcagtcCTTCTTACGTTCT
TAGCTTAGGGTGCCTTAGGCCATGCATGGCCAGTGCCACCAAAACGTTTT
acttttattcaaaatgtccGTGACCAAGCTTTTAGACTTGAGTTcggtca
atttgagggtgctgattcggaatttaaatgttaccaagcttgaatgaaaa
cccgcagtttttgcgtaacTTGCGATCTGTTGCGATTTTAGGCAAAATAT
TGTAAGGcgatcatcgaaaaaatgctctgttcgcgtcacaacgggtgtta
aaaatgcatgcgggcggacgggcgaTAAAAAACATTCCcggtttttttaa
tcacgccagtaactcaggggcaGGTGTTACAGTAatgcgagcaaaacaat
ttttcgatggtcgtcagagcaattgagaaaaaagctaactttaaaagaaa
aaattgcttttcccggaaaattagcggaaaatttgatgcgggcgggtgac
gcgaatatagaacaatttttcaatgaccgtctaagccctgaaaattcatg
attttttgggggtcttcaaaatcaaaatcaaaaaagacttataaccacgt
gatagagctcttcaaactgagcaaaaaatgtataatatcaaagtctcaac
ttttctagataaaaaattccctgttttcaatcaatttttgaccataaaat
ctatggtcaaaaattgattgaaaattttatgcaaaattatataaatatat
aaaaaagttggtcccagacattttgaattttttctttatttttgaaacat
taacAATCCACTGGCCACGGCCTACCTTCATTGtggaaatttgggaaaaa
agaggtaaattttggggaaaatttttgaaatttagtccCATCTGCATAGG
TAAAAATCTTGAAGCTTCCTCTTCATTATGGATATATTGGCACTGTTGTA
TAGCGGTCATTGTGATCTTGGTTGCTGCACGGGCGACTGGAGCTGGAGGT
TTGATTCctactcgcagcggttcacttgggttggcaagtgaatgaacttt
tgcctgggtcaacccatgccatgtgaggggaattgggtagtcagtccaag
gtgctgacgaggcgctcattgaaagcgtctatagttccgaaaataggcct
caaagcctcctgcaactcaaccaaatagaaatagaaatggcAAAACACAA
TGATCTGCAAGACACATTAAACTTTCTCTTATTTTTGATGACAGCTTAGG
TTATGTGCTGTATAAAATGTCATTTGAAACATGATCTGGCCAAGAAATAA
TCAATGCTGAGCAAAGTAATCTACTGTGTAAGTTCCTTTTCATCATTTTC
TCTGTGGATTTTGTAAGAGTCCACACTGTAAAGAAAGTATACTTTCTAAT
GTACAGTAGCAGTAAATATTCTAATTTTAAGGTTACAGGACAAATTTGAT
TTCCATTTGCATATCTTAGATAGTTTATTACAGGCCGTGCAAGCCTGAGC
TTTTTGCCATTTGTCCTTTTCAGAGTCATCGGGATAAGTACCCAAGTATT
TGAAATCATTTACAACTTTAATTTTCTCCCCTGATGAGAAAAAATATCTG
TGGTTGGCTGAAATTGAGCACTTCAGTTTTTTTGGTATTTAAGGGCCCCC
CCTTAGCGGTCGTGAATGGGGCTTAATTTAACTTTgtgaatgaatgaaaa
tttttttaaaaattgcatgAATGCATGAATTGGAAACctttgcgtgaaca
aaaattacgtgaattgcaaaaaaaacattGCGTAAATGCTTGAATTTGGG
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgctgggggggggggggcttcttTAAGTGGAGAGCAACTT
TGGATGCGTTAGCTTCTGTGTTGAATTAGAAGTTAATCAATCAAGTTTGA
GGTAAGAGCAATGTCATCTGTAAAGTCAAGATCAGTCTAGATCAGTAACT
TTAACTTCGGGTATTCATCAACCGTAAGACTATTGCTGTTTTTTTACATT
ACTTGTCTCCTTATATAAtcaaaatcattacaaaatgagcaaaaaaactG
CCTCGTATTGCTTGAGATGTAGCCAAAATTCCCTAAGCATTTCCTAATCA
GGCAATAAAAGAAAGCCTGGAAAATTCCTAAATAGGAAATTAAGATCTAT
AGAAAATTTAGGAAAGTTTTACTGACTGGTTGCACAAGCATATTTTGGTG
CTCTCCACCATTTGGTCtctgggaggtaaacaaacctgtttttgcctgca
tttccttagggaaagttgtgttttttttagcttttcttaagtCATCGAAC
AGAATCCCTTTTATATATATTCTATCTATATTTATGATATTATTATATAC
CGTGACTTTGTGTATTCCTTGTCTAATTTCGTCATAACAACTATTTGTTC
TGCAAAGTAGTAagagtgattttttcaaaaacattaaaagataGTATCAc
cctgaaaaaaatattggtatATATTAAGTCTAAGAGTTAAATAAGAAAGC
TGAAAACCcacactttccctaaccccttgcaggcaaaaacgtgttttttt
actcactcattttttggaaaaactttcCCGAATTCAGAAAATCAGAATTC
GGGCTagaagattttttgtttaatgctttaaaaaatttctgttaattttt
ttttgtggtATTAAATGTATTCATTACAAAGAAAGTTCTTGCACTCCACC
AAACATCCTAAATAGCTGTTTGAAATTAGCCTAAAACTCAAACTTGatta
tcaaaaaaacttttgaaattttcacattttttcgtCACCAATTTGAGAAT
TGAGAAAGAACAATCACCAAGAACGGTGGTAAAACAGTATATTCTTGAAG
AATACCCTGTTTGGGTTAAAGAAAAACTTCAGGTGGGGTTGGGGTGGGGT
CAGATCAGACTGGTTGATTTTCACTTTTCTGTCTTTTTCAATCTTCTTTA
ATCTTTTTTACACTGTAGAAGAAAAATCTAAAAGGTAACGTGGAGAAATT
AGTTGAGTGAAATTTATAATCTTTATTGTTTTGTGtatatatgttttatt
ttgattcaatCAATTTTAGATGAAATATGAATGAACAGAAGGAGCAAGAT
CTGGTAAAAAATGAAGACACAAAAAAGAAGACTGAATTTCATTGCACTAT
TTGTGACAAATATTATGCTTCATACAAGAGTTTTGGAAATCATACCAGAT
CTTATCACAGTGTGAATAAACAAAAAGCACAATGTACATTCTGTGGAAAT
TGTTTCACACGAAAAGACAATTTACAGCAACATATCAGACTTTTCCACAG
TGAAATGCAAACTACATTTGCGTGCAAATTTTGTGGCGAGTCATACTCCA
GTCGAAATATGCTATCAAAGCATAAACAAGACTGTGTCAAAAAACTAAAT
TCAACATATGATGAATCATacaataagaaaaataatgagCCAAAGACTAT
AATTCTTTTCACTCCTACTCCTAAAGGTGCTATACCAGTTTCCCTTCAAC
CACCTCAAGAGTACAAAACTGTAAAAGTTGAAAACACAACAATCCTGGAA
CCACCCAAAAAACGAAGGAGAAAACGTGAATATAACATTACTAGACCCAA
AGATTATGATGAAAACAATAATTCTAATAACACTGTTGGATATTACACAC
ACCCTGTAACAAAAGTAGAAGAAAATAATAACTCTATTGAAATAATGGAA
TTTCCTAAAGAAGAACCTCCAGAAAGCAAGGCCTTGGATTGTACTGTTTG
TAACATTACGTTTCTAAGTGAAAAAGACTATTTGTCTCATAAACCATTTT
GTGATGATGGTCAGTTCTGAACTGAAGATTGAATTTTCATAGTGAAAGAT
TATATATTTTATACCTATTTTTGTATGTATTATTTTTAAACCTCAAATTA
TTTACAACTttccttatttttaccattattAAAACTTCCCAATATAGCTC
AAAATAGGGCTGAACTTAATGTTGATTTACCTTCACCTGATTTTTGAGGT
GGGTTGGTTTGAAAAAagatcttctttaaaatggtgATAAAATTTTCTGG
ATTGGCAGGTTTTAAGGTAAGGTCTGTCGGGTATTAATTacagattttta
aaagttttatctcAGCAACAATATTTAACTGTCAAGTGAAAGCATGCCTT
TTACTAAGTTATTGATAGTTTAGTTTAAATCAAAAGACACAATGTTTTCC
AAGTTCTTCTTAACAGCTTGAATTATATACTCATGTAGATGTAGGATTTT
CATCAAACATGCTTTTGATGAGCATTTCCAATAGTGCTAGCTGTTACATT
CTAAACTTGTTAAATAATAATTTAGCTTTTCTTGCTATGAAACTCTTCAG
CTTGTAAGTATTTTTACGAAGTTTTACATATCGGTATATTTTTGGCTATA
ATTCTTTGTATTCTTTTTTTAAGATGGATTCTATTTTTTGTAACATATTT
TGCTATCATCATTAAAAATCATTataatcaaaatatattttatatacAAT
TTTTATAGAGATTAG Coding sequence (CDS) from alignment at scaffold_242:507228..512292+ >TCONS_00054211 ID=TCONS_00054211|Name=TCONS_00054211|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_242:507228..512292+ (Clytia hemisphaerica)
ATGAATGAACAGAAGGAGCAAGATCTGGTAAAAAATGAAGACACAAAAAA
GAAGACTGAATTTCATTGCACTATTTGTGACAAATATTATGCTTCATACA
AGAGTTTTGGAAATCATACCAGATCTTATCACAGTGTGAATAAACAAAAA
GCACAATGTACATTCTGTGGAAATTGTTTCACACGAAAAGACAATTTACA
GCAACATATCAGACTTTTCCACAGTGAAATGCAAACTACATTTGCGTGCA
AATTTTGTGGCGAGTCATACTCCAGTCGAAATATGCTATCAAAGCATAAA
CAAGACTGTGTCAAAAAACTAAATTCAACATATGATGAATCATacaataa
gaaaaataatgagCCAAAGACTATAATTCTTTTCACTCCTACTCCTAAAG
GTGCTATACCAGTTTCCCTTCAACCACCTCAAGAGTACAAAACTGTAAAA
GTTGAAAACACAACAATCCTGGAACCACCCAAAAAACGAAGGAGAAAACG
TGAATATAACATTACTAGACCCAAAGATTATGATGAAAACAATAATTCTA
ATAACACTGTTGGATATTACACACACCCTGTAACAAAAGTAGAAGAAAAT
AATAACTCTATTGAAATAATGGAATTTCCTAAAGAAGAACCTCCAGAAAG
CAAGGCCTTGGATTGTACTGTTTGTAACATTACGTTTCTAAGTGAAAAAG
ACTATTTGTCTCATAAACCATTTTGTGATGATGGTCAGTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054211-exon-scaffold_242-1491911889:507228..507622 | TCONS_00054211-exon-scaffold_242-1491911889:507228..507622 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1510915933:507228..507622 | TCONS_00054211-exon-scaffold_242-1510915933:507228..507622 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1575043694:507228..507622 | TCONS_00054211-exon-scaffold_242-1575043694:507228..507622 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1491911889:508872..508954 | TCONS_00054211-exon-scaffold_242-1491911889:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1510915933:508872..508954 | TCONS_00054211-exon-scaffold_242-1510915933:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1575043694:508872..508954 | TCONS_00054211-exon-scaffold_242-1575043694:508872..508954 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1491911889:510847..512292 | TCONS_00054211-exon-scaffold_242-1491911889:510847..512292 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1510915933:510847..512292 | TCONS_00054211-exon-scaffold_242-1510915933:510847..512292 | Clytia hemisphaerica | exon |
| TCONS_00054211-exon-scaffold_242-1575043694:510847..512292 | TCONS_00054211-exon-scaffold_242-1575043694:510847..512292 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:507228..512292 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
