TCONS_00054211-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054211-protein
Unique NameTCONS_00054211-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054211-protein ID=TCONS_00054211-protein|Name=TCONS_00054211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MNEQKEQDLVKNEDTKKKTEFHCTICDKYYASYKSFGNHTRSYHSVNKQK
AQCTFCGNCFTRKDNLQQHIRLFHSEMQTTFACKFCGESYSSRNMLSKHK
QDCVKKLNSTYDESYNKKNNEPKTIILFTPTPKGAIPVSLQPPQEYKTVK
VENTTILEPPKKRRRKREYNITRPKDYDENNNSNNTVGYYTHPVTKVEEN
NNSIEIMEFPKEEPPESKALDCTVCNITFLSEKDYLSHKPFCDDGQF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034195XLOC_034195Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054211TCONS_00054211Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 51..74
e-value: 0.039
score: 23.1
coord: 220..240
e-value: 300.0
score: 0.3
coord: 21..44
e-value: 0.49
score: 19.4
coord: 81..101
e-value: 21.0
score: 10.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 53..74
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 23..44
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 81..101
score: 8.663
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 51..79
score: 11.385
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 21..49
score: 9.723
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 52..100
NoneNo IPR availablePFAMPF12874zf-metcoord: 222..238
e-value: 0.0011
score: 19.2
NoneNo IPR availableGENE3D3.30.160.60coord: 91..242
e-value: 4.7E-4
score: 19.7
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 81..100
e-value: 0.019
score: 15.3
coord: 52..74
e-value: 1.8E-4
score: 21.7
NoneNo IPR availableGENE3D3.30.160.60coord: 4..32
e-value: 0.038
score: 13.9
coord: 33..61
e-value: 3.0E-7
score: 30.2
coord: 62..90
e-value: 1.3E-8
score: 34.6

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054211-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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