TCONS_00054209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054209
Unique NameTCONS_00054209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054209 ID=TCONS_00054209|Name=TCONS_00054209|organism=Clytia hemisphaerica|type=transcript|length=1023bp
GCACATTATAAGAAGTTATGTGAATGTgttttaagaatttgtaaaaatca
atttcagatttCCCTTCATGAAATATCATCTAAAATAATATGTATTTGAT
AGTTTTTGATTTGGTAACAATTGTTATGATATGAATTGCTACGTCTTTCT
TATTACTTCTGTGATAGTAATAAGCTCTATAAACTTTTGTGCTGCAAGTT
ATGAAGATGATTTGCTCACCATATCTAGAGGTTTGGAGAAAGTCGCTTCG
TTCTATTCATCACATTATAAAGAAGTCAACTTAGATTCCATCTTTGGGTT
GAGAGCTGCAGAAGGTACATTGCACCACTTATTCACGAAACATGAAGACA
AAATACGAAAACTTCCAACTCATATTTTCACATCCATTGAAAAGAGTTTT
ATCTCAATACGTATATCTGCTGCAATGGGGTATCAAATATTGGATAAAGA
GAACGACAAATATCTTCAATCATTCAGGTACATAGTCGACAAGAAATGGT
TTCACAAATCTAACACTCGTTTACCGTTAGTCGCTGAAGCACCATCATCG
AGTCAGATTGTCAAAGCCAATGATGAATTAGATGAGAAATTCAGTGATAA
ATGTATGAAAGGTCTTTTGGGGACATCATCAACGAAAAAGAAATGTACAG
TTGAGGATGATTGCTGGTCGGTAATGAATAAGGAAGGCAATTTTGGATAT
ACGATCACTCATCAAGCTTTGTTTTTCATGCTTGGAATCTCTCTTGGATG
TAAAAATGTATTTCAACAGAAACTGGGTTTCAAGACCAAACTTGAAGACC
GTTTACATATTTTCGGATCACACATTTACAACCAAATGCAAGAAATTTCC
CGAACCGGTTACCCGGTATCCGAGCACGATCTGTTTTTAGAGCAAGCTGT
GGTCTCCAGTTGGTTAGGAATTAAAGGCTCAATGAATATGTATGATACAC
TTACAGTTTTGTCTTGGCAAGATGATATTGGATGTTACAAGGAACCGAAA
AGTAATACACAAAATACTGGACA
Run BLAST on NCBI

transcript from alignment at scaffold_242:477775..490681+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054209 ID=TCONS_00054209|Name=TCONS_00054209|organism=Clytia hemisphaerica|type=transcript|length=12907bp|location=Sequence derived from alignment at scaffold_242:477775..490681+ (Clytia hemisphaerica)
GCACATTATAAGAAGTTATGTGAATGTgttttaaggtggtagtctaccgc
cagatttcaaaagtcaaaaaatcacattttttgcaataactcaagaactt
ctttacatttcgtaatgaaattttcaggaaatgtaNNNNNNNNNNNNNNN
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gatgttcagaaagacctaaggatctcaaaacacccaaaaaccaaaattcg
acaattttttcgatgattttccatttctcggtagactaccaccttaagaa
tttgtaaaaatcaatttcagatttCCCTTCATGAAATATCATCTAAAATA
ATATGTATTTGATAGTTTTTGATTTGGTAACAATTGTTATGATATGAATT
GCTACGTCTTTCTTATTACTTCTGTGATAGTAATAAGCTCTATAAACTTT
TGTGCTGCAAGTTATGAAGATGATTTGCTCACCATATCTAGAGGTTTGGA
GAAAGTCGCTTCGTTCTATTCATCACATTATAAAGAAGTCAACTTAGATT
CCATCTTTGGGTTGAGAGCTGCAGAAGGTACATTTTTCTCACTTTATCCg
ggggttacttaggcaaaatgggtgccgggtatgtgcaagCCATAAAGGTC
CATTTATCACCTCACtccaaaagtctctcaaaggagtacataaaactatt
aaaaagcaaattgagtttctgtaagggttccaaaataacgaaaatcaaaa
aaagaaaccccTCAAGagtcataaatttttgaaatttggactactgtaaa
atttgaataatttggctgaaattttggggaaatagtCTCTCTTAGAGTGG
CAAAAACGTCaagaaatggagaaaaaaagttcagtctctctaagggtcga
ttttcaaaccttggctcggacatacccgtcatctcgcaaacctaaagtct
attcacgataatattcatttacctataatttttgaaggaattcttcaatc
tttataaatttggtatcaatggaaagatattagtgagtggatcaatttga
aataaaaaaatttttaaacatattctaaaaatgaagatgaaaatgaagaa
gaaaaaaatgaagatcttgtagaaaggtgctataactatcattttcactg
aagtaaatccttgattatcgaacattatcactgtgaaaaaatttctcaaa
aataatcattaagtcaaaagatatcaagcaaagttataagctgattgacg
tctaaaaacgctgttttctgctgtttttgggggtcaatcacttattaact
ttgtatcataactttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNCTTATCGTGAACAGGCtttagtaccccccccccctagtaccgTA
ACTTTACGATACAAACCATAACTATATCACTAAacaacttttatttaaaa
aaatagattaaatttttctAAGCCTTAGTTAGATAGGAGTAACCCTTTTC
AAtggaacacccctgtctcacagccccggtggagcttttcTTCCACAGTG
GGGATAATAATTCCTATCGAAAttcgaatggggataaaaattctgatatg
atatgatatggCTTATGGTCGATGCAGTGATTGTGCTCGATTAGGACCTT
AAAAACGAAATTTGGAACCTGTAGGATGCATAATCTGATATACTTTCCAA
AATCTAGTCTAAGAAGTGGTTAAAAATAATGCATGTCAAAGACTACTAGT
TTTATTACTGAGATGAACTCGTTtgcccgggggagggggtgggtactacc
cttgccgaccgacgggggtgtgTCACTGAacttcgaaaaatggaccctac
gtgggactcgttctTTTAACCCTGcggaatgggactgaaattccaaaatt
cagGTACCCTGGCCAGTGGCACATCTCCGTACCCCTTTTTCCCCAGTACA
CCCCCCCCCGGTTCGTTTGCATTTTTCTCATTCAGGAAAACTCCATGTCA
GCTCTCACTCTCAGGTTGTAATTTCAACACCTACGCATCGGTTTTATCAT
AATTGCTTCATCATTAAACGATTATTACAGGAAGCAGCCGTTACCACAAT
ATCAAACTTGTTGTagttatatcttttttttttttaaatgtcaaaaataa
aggaatatacaggaaaagtaatgaaaataataaagtGACTCTGCATTAAT
TGTGGTTGCCCAGAGCACAATGCTTTTTATTCCGTTAGCTTGAAATTGTA
CAATTCTGGATTGACACCGGAAATTAAGGAGTTGCAGTAATTGCAGATTC
TCTATTTCTCTATTTCTGGTTTCCACTAATTACATGAGAGAAGGCTGCTT
TCTcgcaatttttagttttttttaattttcaattcaaaagcTGGCGTATA
CGAACCTAAAACCAGGgatgtctcacagccccggtggaatttttttcaac
agtggagataaaaatttatatcaCAGTCCCAACGGGGCGGGGGTCCCAAT
GGGTCTGTAACACAGGATATTACCTACCAGTAGTACAACTCCCCATTGTA
ATTTCAAATATGAATATGTTTctaaaattctaatttttgcaTTCAGGTAC
ATTGCACCACTTATTCACGAAACATGAAGACAAAATACGAAAACTTCCAA
CTCATATTTTCACATCCATTGAAAAGAGTTTTATCTCAATACGTATATCT
GCTGCAATGGGGTATCAAATATTGGATAAAGAGAACGACAAATATCTTCA
ATCATTCAGGTATATTTCAGTTACCCCTCTATGTAAAATGCCCATAGACA
CACACCTTCCTCACAGGaaagattgtccaaaatatcgttcccgatggaaa
attatcctccgaTTTTTTGTCCCTACTGAAACTAATCAAATaaaatcccc
actgaattttctgacttaaaacacaaaagaattgaaatctccagccataa
aaaatatgggaatatcgatCCCCATTGAGTTCCAGTCCGTTATTATCCtg
ccgggtctgtgagaagggagtgtataaactggagtcgtttataatgtaCA
GTAATATTGTTGTTAGATAGTAGTACAATAATCGTAACATGATAAGATCA
GTTTGTTAATATGGTTTGATAATTTGATGTTCCTTTTTTGCTTGGTCCTA
CCTGTTTTTGTGGATGGCATGATTGGGTCTTTTTCCTTTTGTGATGACGT
GAGTCCAAatcttttttgtgttttttggtAATAGAGATAGTCTAGCAAGN
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NNNNNNNNNNNNCtcttaaaaatttcataaaatcaaTAAACTATTTGTCc
aatttcattttctcttttaaCATTTCAGTCTTTAGGTAATTGTTAGTTTC
ATTCGGTAACCATATCTGCATTCTATTCGACATCTCGGAATTTATTCAAC
AATTTCTCTGGGCTAAATTTTGTCTTGGTTGTAGTCGGTACTGTCCTTCT
CAGTGTACGCAATTTTGACTcgatataacttttttttttttttttggttt
ggtGCTCTGTGCAGTTCTTTAAATATTCGTGTTTCATTAAATAACAACTT
TATCAAGCATGGTTAAGTATTGAGTACTCAACACAATGAACGAAGTTTAC
TTTTGTTTCTGGGATAAATTTGCTGTTTTTCAGAAATTCTTTTCTTGTAC
TCGTAGATCTTTCGGTTGTGCCATTGGTTTTTCTGGTCGTATATTTTATC
ATCGTTGAGAATTCTCTCACTGATTTCTGGTTGCTGCTGGCTTTTCTCTT
GGTATTGTATTGTAAGATTTATCAACGATACGATATTCATAATCAGGATG
TACAACGTTGGTAAAATCATTTTCAGTAGCAGACTCAGTTGTACCTTGTT
TCTGCTTCGATTTATCTGGTATTTTCGGCATTTCAGTTGAAACCTCATAC
ATTCTGTCGACTGTTTTGTGGATATTTGAACACTCTCGTATGATTTCGGA
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NNGTTTGACGTTAAACTTCTCTTCTCGTTGAACTTTAAATAATTGATTTT
GTGTAAAACTctcgttttgatagtttttaATACTTTCTGATGTAAAATCA
CTTTTGTCCTTTTCAAAATAACGTGTCCTTAATCGCGAAATCAACCAAAC
TACCAATCAACAATAGTTCAGTTTCTGTGTAATTAAGTAGTATTCTACTA
CAATCTCTTACTTNATCCTCATTCAGTCCGGCGATGAGTGAGTCCAATTT
CTGCTCATTGCTGTAATTTAATTGATACACTAGCTCTTCGAGTTTTTCAA
GGTAGACATCTAGTGATGAACATTCCTCTTGTTTGAGGNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNTTGGGGTCACCCTTTAGTTATTGAGG
GGACCTCTCAGATCACTTATCTGTTCCTTCGATCAGGGTATCCCTTATTG
GGGATAAGTCTATGGACACGTAGTAAAAGTACGCTAATAGATTTCAATCA
ACATCAATTCTGTTTCTCCAATTAAGCAATAAATACCAAATAAGCGTAAC
ATAAATAACATCAAATAACTTAGTAGCTCTGGCATGTAATTAACGATAGT
TCTCTTTCAAGTCCTTCTCCTTCAAGTTCTCCTTTTCAAGTCCCTGAAGT
CCTTCTCCTTTAAGTTCTCCTTTTCAAGTCCCTGAAGTCCTTCTCCTTTA
AGTTCTCCTTTTCAAGTCCCTGAAGTCCTTCTCCTTTAAGTTCTCCTTTT
CAAGTCCttgatttctttccttttctcgCTCATGTTTGCTCGCGCTATTC
AGGGGTCTGGGCTCGAGGGCCTGAGCCCCACTCTATTGATTTCTATTCAT
CTTTCAGTTCATTAATATCGTGTTAGCTCAGTCCCAGTCTCTGCTTGCAT
TATTCATCAATGATTAGTTTACTAGCTTCAcagtattattagtattacac
gcgttataaacgactccacCAGTCTATAATAGAGAAAAAGGTAAGGTGTG
ATACGTgatttgggcttatttcttcaTTCTGCGTGACGAataaattttgc
caattttcacaATGAAAGATAGAAATAGATGTGATGGCGTGATGAAGGGC
GATTGTAATATGCTGCATTGCTTGGGACTaccccgggggtactagggttg
cgagctgactggTATGTACCGCCCGATTTTGACCCGCAGACCCTTAgcag
gactaaaaaggagaaaaaataggaaaattttgcgACTTTGTCGACCGTTA
CCGGGACTAAtctgaccaaattttgatctttcaaggagcaaaaagttgaa
attttcctatttttccgacccttagttggactgaaatttaattttctggt
tTTTCCAACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacccc
cccccccccccgagggAATAGCTAtcttatttaaaacaaattcaaacacG
ATTTCAGGTACATAGTCGACAAGAAATGGTTTCACAAATCTAACACTCGT
TTACCGTTAGTCGCTGAAGCACCATCATCGAGTCAGATTGTCAAAGCCAA
TGATGAATTAGATGAGAAATTCAGTGATAAATGTATGAAAGGTCTTTTGG
GGACATCATCAACGAAAAAGAAATGTACAGTTGAGGATGATTGCTGGTCG
GTAATGAATAAGGAAGGCAATTTTGGATATACGATCACTCATCAAGCTTT
GTTTTTCATGCTTGGAATCTCTCTTGGTCAGTTTACTCACAAATCTTTAA
GATTATAGATTTCCATTGACATTTTCATTCCCACCGACATAGGGGTGTGA
TATTAAAGAAGTTTtctacttttcaatttttttttaatggaaaCATTCCC
CTGTTAATTTTTGACCCGATCTTGACCCAAAAAACAAGGAGGTTTATAAC
CgtttctttaaatctttttctAAATTGGATGTATACTGCTTTGAGTAAGA
AACCCTTAACTCGCAGAACCAGACCCGATAGGGTTTCTCATATCATTTCT
TAAGCCAATGGGGGTAAAATGATAAATAACATTGAATCAATAACACAATA
TCTTTTGCAGttaggatttttttatttaagaatGTATTCAGCGGGGAAAA
AAACTGTAACTTTCCACTGGATACTTTTGCCAATCTTTTCTAGTAGGAGG
GGGACCCAGTGGATCTCTGAGCACGGGGTATAGTAAGTAAATTATAATAT
AATAGAAAGTAAATCCCTCATTGTTTATAGGATGTAAAAATGTATTTCAA
CAGAAACTGGGTTTCAAGACCAAACTTGAAGACCGTTTACATATTTTCGG
ATCACACATTTACAACCAAATGCAAGAAATTTCCCGAACCGGTTACCCGG
TATCCGAGCACGATCTGTTTTTAGAGCAAGCTGTGGTCTCCAGTTGGTTA
GGAATTAAAGGCTCAATGAATATGTATGATACACTTACAGTTTTGTCTTG
GCAAGATGATATTGGATGTTACAAGGAACCGAAAAGTAATACACAAAATA
CTGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034194XLOC_034194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054209-exon-scaffold_242-1491911889:477775..477809TCONS_00054209-exon-scaffold_242-1491911889:477775..477809Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1510915933:477775..477809TCONS_00054209-exon-scaffold_242-1510915933:477775..477809Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1575043694:477775..477809TCONS_00054209-exon-scaffold_242-1575043694:477775..477809Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1491911889:479673..479951TCONS_00054209-exon-scaffold_242-1491911889:479673..479951Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1510915933:479673..479951TCONS_00054209-exon-scaffold_242-1510915933:479673..479951Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1575043694:479673..479951TCONS_00054209-exon-scaffold_242-1575043694:479673..479951Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1491911889:483321..483483TCONS_00054209-exon-scaffold_242-1491911889:483321..483483Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1510915933:483321..483483TCONS_00054209-exon-scaffold_242-1510915933:483321..483483Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1575043694:483321..483483TCONS_00054209-exon-scaffold_242-1575043694:483321..483483Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1491911889:489632..489900TCONS_00054209-exon-scaffold_242-1491911889:489632..489900Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1510915933:489632..489900TCONS_00054209-exon-scaffold_242-1510915933:489632..489900Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1575043694:489632..489900TCONS_00054209-exon-scaffold_242-1575043694:489632..489900Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1491911889:490405..490681TCONS_00054209-exon-scaffold_242-1491911889:490405..490681Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1510915933:490405..490681TCONS_00054209-exon-scaffold_242-1510915933:490405..490681Clytia hemisphaericaexon
TCONS_00054209-exon-scaffold_242-1575043694:490405..490681TCONS_00054209-exon-scaffold_242-1575043694:490405..490681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:477775..490681 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0986971	0	4.12762	3.91824	7.03265	8.25972	4.029	3.08633	3.74674	3.19414	4.4886	2.86674	5.59951	7.46649	5.1826	6.25781	4.97411	6.21378	5.51087	5.51898	1.88607	2.41396	2.18141	3.72228	0.950134	0.129888	5.19297	3.4891
Blast
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BLAST of TCONS_00054209 vs. Swiss-Prot (Human)
Match: CP089 (UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf89 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.104e-18
Identity = 66/270 (24.44%), Postives = 114/270 (42.22%), Query Frame = 2 
Query:  221 ISRGLEKVASFYSSHYKEVNLDSIFGLRAAEGTLHHLFTKHEDKIRKLPTHIFTSIEKSFISIRISAAMGYQILDKENDKYLQSFRYIVDKKWFHKSNTRLP---LVAEAPSSSQIVKANDELDEKFSDKCMKGLLGTSS-TKKKCTVEDDCWSVMNKEGNFGYTITHQALFFMLGISLGCKNVFQQKLGFKTKLEDRLHIFGSHIYNQMQEISRTGYPVSEHDLFLEQAVVSSWLGIKGSMNMYDTLTVLSWQ-DDIGCYKEPKSNTQN 1015
            I   LE+   F      E+NLD + G+R  E  L  +  K   +    P  +   +    +   I  ++ Y  L   + KYL+ F+  +   ++     +LP   +  +A          D   E+ SD C+  LLGT + + + C + D C S+M K G  GY ++HQ LFF+     GC        G   + +D +++F +++ +  +     GY     D+F+E  +     G      +     +LSWQ    GC+ EP +  + 
Sbjct:   39 ILSALERATVFLEQRLPEINLDGMVGVRVLEEQLKSVREKWAQEPLLQPLSLRVGMLGEKLEAAIQRSLHY--LKLSDPKYLREFQLTLQPGFW-----KLPHAWIHTDASLVYPTFGPQDSFSEERSDVCLVQLLGTGTDSSEPCGLSDLCRSLMTKPGCSGYCLSHQLLFFLWARMRGCTQ------GPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIMFCGMGGFSDFYKLRWLEAILSWQKQQEGCFGEPDAEDEE 295
The following BLAST results are available for this feature:
BLAST of TCONS_00054209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP0891.104e-1824.44UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf... [more]
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