TCONS_00054203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054203
Unique NameTCONS_00054203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054203 ID=TCONS_00054203|Name=TCONS_00054203|organism=Clytia hemisphaerica|type=transcript|length=407bp
CATCCTAACAACATAGTGATACAACCAAACAACTTCTCGGCTGCCGTATT
CGGTGCAATGTTACCAAATCCGCAAGTTGTCAAACTACTCATTGTGTAAT
ACAAAGCGGAAAAATACAAAGTGAATAAATCAGGACCGGTGCCGTCAACA
ATTTTCCCTTCTGTCGTGAAATTGTATGGTTGATCGGTGACCTCAGCCAG
GATATAAAGCCAACTATGGTGTTTCTTGCCGGGCTCGTCCCAAAAATATG
CAATCATCTACCACACACAGGCCATCCAATGGCCACACAATAGAAACAAA
AGCAACCATATACCCAATGTGACTGCACTCATCTGCATGTAACGTCCTAT
CTTCTTACTGACTTTTCCCAAACGTATCAaacgcaaaatttttaaagcac
tCAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_242:366407..367119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054203 ID=TCONS_00054203|Name=TCONS_00054203|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_242:366407..367119+ (Clytia hemisphaerica)
CATCCTAACAACATAGTGATACAACCAAACAACTTCTCGGCTGCCGTATT
CGGTGCAATGTTACCAAATCCGCAAGTTGTCAAACTACTCATTGTGTAAT
ACAAAGCGGAAAAATACAAAGTGAATAAATCAGGACCGGTGCCGTCAACA
ATTTTCCCTTCTGTCGTGAAATTGTATGGTTGATCGGTGACCTCAGCCAG
GATATAAAGCCAACTATGGTGTTTCTTGCCGGGCTCGTCCCAAAAATATG
CAATCATATACCTGAAAACAATTAAAGACACCAAAGAATGTTAACAAATA
TTTACCTACAATAAAACCAATTGGATCATTTGAGAATTTTCATGGTCTGG
TTTCACCGGCAGGAACTTGCAAAATACGTATGTTGACAAAATTTTTGCCG
ACAAATTTTTAAAGCTGGAAATTTGTTGCCGTTAAGAACTGCCCTCTTTT
CCTGGAGTCATTttccttcactttcatgtctTAGTTCTTGAAAAAAGTCA
CTGACATATGATTGGTGAAGCGTGTAGCAAAAGACTACCCGatcaaaaga
aaatctaaaCCACCTACCACACACAGGCCATCCAATGGCCACACAATAGA
AACAAAAGCAACCATATACCCAATGTGACTGCACTCATCTGCATGTAACG
TCCTATCTTCTTACTGACTTTTCCCAAACGTATCAaacgcaaaattttta
aagcactCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034189XLOC_034189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054203-exon-scaffold_242-1491911889:366407..366663TCONS_00054203-exon-scaffold_242-1491911889:366407..366663Clytia hemisphaericaexon
TCONS_00054203-exon-scaffold_242-1510915933:366407..366663TCONS_00054203-exon-scaffold_242-1510915933:366407..366663Clytia hemisphaericaexon
TCONS_00054203-exon-scaffold_242-1575043694:366407..366663TCONS_00054203-exon-scaffold_242-1575043694:366407..366663Clytia hemisphaericaexon
TCONS_00054203-exon-scaffold_242-1491911889:366970..367119TCONS_00054203-exon-scaffold_242-1491911889:366970..367119Clytia hemisphaericaexon
TCONS_00054203-exon-scaffold_242-1510915933:366970..367119TCONS_00054203-exon-scaffold_242-1510915933:366970..367119Clytia hemisphaericaexon
TCONS_00054203-exon-scaffold_242-1575043694:366970..367119TCONS_00054203-exon-scaffold_242-1575043694:366970..367119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:366407..367119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.692111	0	0	0	0	0	0	0	0.203424	0.341474	0.0869413	0.216887	0	1.15381	0	0.622438	0.0707618	0.447563	0.0157243	0	0.122904	0.198286	0.15372	0
Blast
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BLAST of TCONS_00054203 vs. Swiss-Prot (Human)
Match: KCNH1 (Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.186e-29
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = -1 
Query:    3 VLSALKILRLIRLGKVSKKIGRYMQMSAVTLGIWXXXXXLCGHWMACVW*MIAYF--WDEPGK--KHHSWLYILAEVTDQPYNFTTEGKIVDGTGPDLFTLYFSALYYTMSSLTTCGFGNIAPNTAAEKLFGCITMLLG 407
            + S+LK++RL+RLG+V++K+  Y++  A  L + + +F L  HWMAC+W  I  +  +DE  K  +++SWLY LA     PY F   G      GP   ++Y S+LY+TM+SLT+ GFGNIAP+T  EK+F    M++G
Sbjct:  349 LFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIG 487
The following BLAST results are available for this feature:
BLAST of TCONS_00054203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH11.186e-2942.45Potassium voltage-gated channel subfamily H member... [more]
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