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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054199 ID=TCONS_00054199|Name=TCONS_00054199|organism=Clytia hemisphaerica|type=transcript|length=1651bp
CTTTTATTTGGATCATTTTCTAGAGCCATAATCAATTCAGatcatttttg
ttttatctctgcctagttatttttgacaatttaaTGATTAAATCTTTTTA
GGAATAAAATATTGAATGcataaacaaacttttaaactGCTTGTAAATCT
GGTAAAACGAACAGCAAGTAGAGTCCCTAGAAGCTGCATTAACCAAAACC
CATTAACATTTTCAACAAAGGCATATCCTGATTGGAGGATAAATAACATG
AAGTTCTTAAATCAAGTTGAAGCTCAAAATATTGATATTGAATTATTCAA
TGAGTACAAGTTCTCTATTGAACAGTTGATGGAGCTTGCAGGTCTAAGTG
TCGCATGTGCTGTGGCCAAATCATTTCCGCTTGATTCATTGTTGAATGCA
ACAAGAAAGAATCGTATTTTCGTTTGCTGTGGACCAGGAAATAATGGTGG
CGATGGGCTTGTTGCTGCAAGACATCTCAGACATTTTGGTTATGATCCAG
TCGTTTACTATCCCAAACGGCCAAACAAAGATTTATTTCGTATTTTGACC
GAGCAATGCGCTAGACAGGGAATTCCATTTTTAGATGAAATGCCCAGTTC
TGCTTACATCAGTGAGAATTACAATTTCGTTGTGGACGCTATTTTTGGGT
TCAGTTTTCGAGGGGATGTCAGAGCACCTTTTGATATGATTTTGGAAGTG
TTGAAATCGATTTCAGTTCCCATTGCCTCAGTCGATGTTCCCTCAGGTTG
GAATGTGGAGAATGGAAACGCTGAGGGAATTAATCCAGACGTTCTTATTT
CATTAACAGCTCCTAAACTTTGTGCTGCCAAATTCCGTGGTGAAAGACAT
TATCTCGGTGGTAGATTCGTTCCGAAAGCTTTAGAGGATAAATATCATTT
AGATTTACCGTTATTTCCTGACCAAGAATGTGTAGTGCTACTCCCAAAGA
TTAAATGAATGCGATTGTCAACATTTAATACTTGTATCGGTAGGGAGAGA
ATCTACTTTTCTAAAAGGTGTTACGAGAATTTCGAGTACCGGCTAAATTT
TAGATTTAACTGTATGAATGGAAGCATTTTTATCAACGTAGACAAAATAC
AGTAAACAGATGCAATCGTGATGGTCTTcagaatgttttgttttgtggtA
ACTAAAACGAACGTAATTTAAACATTGAACTGGTCCTAAAGAGTGCTTGT
ACCTCGTATTCgctttataatttttatttttatcgaCTTTATATATTTCA
AGCCCATTTCAAGAATAGGAATCTCATCCCTTACCTTTCCTACCAGTCGG
TTGACGAAGTTTGCTCTCTTTCTGAATATTCTGGCTTGAAACTCGATGTA
AAACTTATTAACAGTTAGTATGTTGACCAAAAAATGCAGCCTTTGGACAA
TTTTACGTATTTAAAACGCTCAAACCATGAACCGGAGTgtattttttcac
atttttagtTATAGGGAATATATGATTATTTTCTTCAGTTTTGTACATAT
ATAAGTAATATTATGAAATATAGGTTTTTAAATTACATTTCATGGGTAAT
GTTGGTAAAATCTGGGGAAGGGAAATGTTTAATAGACTGGGCATAAAAAA
ACCCTTTCTTAGAGAGAAGATCTACAATACTGCCAATTTTTAGCCTACTG
G Run BLAST on NCBI protein sequence of TCONS_00054199-protein >TCONS_00054199-protein ID=TCONS_00054199-protein|Name=TCONS_00054199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MHKQTFKLLVNLVKRTASRVPRSCINQNPLTFSTKAYPDWRINNMKFLNQ
VEAQNIDIELFNEYKFSIEQLMELAGLSVACAVAKSFPLDSLLNATRKNR
IFVCCGPGNNGGDGLVAARHLRHFGYDPVVYYPKRPNKDLFRILTEQCAR
QGIPFLDEMPSSAYISENYNFVVDAIFGFSFRGDVRAPFDMILEVLKSIS
VPIASVDVPSGWNVENGNAEGINPDVLISLTAPKLCAAKFRGERHYLGGR
FVPKALEDKYHLDLPLFPDQECVVLLPKIK Run BLAST on NCBI transcript from alignment at scaffold_242:312204..315563+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054199 ID=TCONS_00054199|Name=TCONS_00054199|organism=Clytia hemisphaerica|type=transcript|length=3360bp|location=Sequence derived from alignment at scaffold_242:312204..315563+ (Clytia hemisphaerica)
CTTTTATTTGGATCATTTTCTAGAGCCATAATCAATTCAGatcatttttg
ttttatctctgcctagttatttttgacaatttaaTGATTAAATCTTTTTA
GGAATAAAATATTGAATGcataaacaaacttttaaactGCTTGTAAATCT
GGTAAAACGAACAGCAAGTAGAGTCCCTAGAAGCTGCATTAACCAAAACC
CATTAACATTTTCAACAAAGGCATATCCTGATTGGAGGATAAATAACATG
AAGTTCTTAAATCAAGTTGAAGCTCAAAATATTGATATTGAATTATTCAA
TGAGTACAAGTTCTCTATTGAACAGTTGATGGAGCTTGCAGGTAATTTTC
ATACCTTaatggtattaaatttcgcgtgttacaaaatttcgcgatttttt
aggtcaaatttcgcgaaatttaataccgtttaaatttttcaaaaatacaa
aatcaagaaattaaatacacacgaaaaattttcaactcttttgatactta
tttgttacacttagctactatttttgtcactagttttgttactatttttg
gtatgtttacaCCCAATACGGTGTGTTTCAAGTgaaatcagtcattttct
tcCTTTActcccactttttgaaaatgcccaatTTAATGAATCGTGAAATT
TAATACAAGTGAAAATTTTCAGTAACTGTTAATTGCCagatttaatacac
gcgaaacacatttcctcaaaagaattttgtgaatcgcgaaattttgtaac
aCGCAAAATTTCATACCATTAAGGTATTATTTATTTGCTATTCCCAATCT
TTTCTTTGTTCTGATaataagaacaatagaaaattattattatacCTAAA
TTAGCAAAAAggaaaaatgagaaataatgaagaaaacaaCCCTATgttaa
ataaatttattttatcaGCCTTGTAATATTCAGATTAGAAGTATAATATA
GCTTGAATCACAAGAAATACGTCTGGCTACATTTTAAGAGATTTTTTCCC
ATCAAACTGGCCATAATTATTAACTCAATCTGATTAGCTAAGATTTAATC
CCCCTTGTCATATTATTGGATGTGAAGGGTTTGGTAATCTAGTCGTTGGC
TACCACAAtatggaaaataaatttttcttgctTATCTTTTATTTTCTTGC
CTTGGGGAATATGATAtgggaaaaaaaaaagttatatatTGTACTTGTGA
CAGTAAAATATCACTATGATATATACAATATCACTATTTAGGAATATTAT
GGTACACTCAAGAAGTATTTTCCTATTTTTAGGTCTAAGTGTCGCATGTG
CTGTGGCCAAATCATTTCCGCTTGATTCATTGTTGAATGCAACAAGAAAG
AATCGTATTTTCGTTTGCTGTGGACCAGGAAATAATGGTGGCGATGGGCT
TGTTGCTGCAAGACATCTCAGACATTTTGTATGTATAGAAACTTTATCAA
GTTATACACTATGAGCTTTTCGATTATAAACTTGAATTATACGAAATTTG
TCAGAATTTAGTTTGTTTCTTTCACTTATAGCAAATATCATTCTTTCGTT
TTAACagctcttttcaaaattttcaatttaaaatttgTGAAACCTCTATT
TTACTTTGATCGTATTTCTTTGCAATAAGCAATATGTCACCAGTTTTATT
NAATTTTTGAAACCTCTATTTCACTTTGATCGTATCTCTTTGCAATAAGC
AATATGTCACCAGATTTATCTTAATTAATTCATGCTCCTTTTTTATAGGG
TTATGATCCAGTCGTTTACTATCCCAAACGGCCAAACAAAGATTTATTTC
GTATTTTGACCGAGCAATGCGCTAGACAGGGAATTCCATTTTTAGATGAA
ATGCCCAGTTCTGCTTACATCAGTGAGAATTACAATTTCGTTGTGGACGC
TATTTTTGGGTTCAGTTTTCGAGGGGATGTCAGAGCACCTTTTGATATGA
TTTTGGAAGTGTTGAAATCGATTTCAGTTCCCATTGCCTCAGTCGATGTT
CCCTCAGGTAATATTTTTTGCATACCTTTACACAAAGTACACAATTATTT
AACGGCTTTGAAATTAACACGGGAGTAAGTAACACGAATCTTTaaacttt
cttttattttttggcttttaaaaAGTAACACGAAATGTTTTAGTTTTTGT
TAGTTTCTGCTTAtcttcgtgtaataaggtatactGTATCAGACTGTATA
CAACtttataaaaattacaaaaatctttgaattttgTACCAGCCTCGTCT
TTACTattgctaatttttttctttcgaaaagcTCTACTcaaataccttaa
gtggatggctaattttttttctgacttaaaattttctttcgaaaagcTCT
ATTCAAATACGCTTAGGTTCTATTTTTTCCTAGATATTGGCTACACTCTC
TGAACAAAAGTCCCCCACAAAACCGTTACATATTTTGTACTTAACGTTGT
TTCAGGTTGGAATGTGGAGAATGGAAACGCTGAGGGAATTAATCCAGACG
TTCTTATTTCATTAACAGCTCCTAAACTTTGTGCTGCCAAATTCCGTGGT
GAAAGACATTATCTCGGTGGTAGATTCGTTCCGAAAGCTTTAGAGGATAA
ATATCATTTAGATTTACCGTTATTTCCTGACCAAGAATGTGTAGTGCTAC
TCCCAAAGATTAAATGAATGCGATTGTCAACATTTAATACTTGTATCGGT
AGGGAGAGAATCTACTTTTCTAAAAGGTGTTACGAGAATTTCGAGTACCG
GCTAAATTTTAGATTTAACTGTATGAATGGAAGCATTTTTATCAACGTAG
ACAAAATACAGTAAACAGATGCAATCGTGATGGTCTTcagaatgttttgt
tttgtggtAACTAAAACGAACGTAATTTAAACATTGAACTGGTCCTAAAG
AGTGCTTGTACCTCGTATTCgctttataatttttatttttatcgaCTTTA
TATATTTCAAGCCCATTTCAAGAATAGGAATCTCATCCCTTACCTTTCCT
ACCAGTCGGTTGACGAAGTTTGCTCTCTTTCTGAATATTCTGGCTTGAAA
CTCGATGTAAAACTTATTAACAGTTAGTATGTTGACCAAAAAATGCAGCC
TTTGGACAATTTTACGTATTTAAAACGCTCAAACCATGAACCGGAGTgta
ttttttcacatttttagtTATAGGGAATATATGATTATTTTCTTCAGTTT
TGTACATATATAAGTAATATTATGAAATATAGGTTTTTAAATTACATTTC
ATGGGTAATGTTGGTAAAATCTGGGGAAGGGAAATGTTTAATAGACTGGG
CATAAAAAAACCCTTTCTTAGAGAGAAGATCTACAATACTGCCAATTTTT
AGCCTACTGG Coding sequence (CDS) from alignment at scaffold_242:312204..315563+ >TCONS_00054199 ID=TCONS_00054199|Name=TCONS_00054199|organism=Clytia hemisphaerica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_242:312204..315563+ (Clytia hemisphaerica)
ATGcataaacaaacttttaaactGCTTGTAAATCTGGTAAAACGAACAGC
AAGTAGAGTCCCTAGAAGCTGCATTAACCAAAACCCATTAACATTTTCAA
CAAAGGCATATCCTGATTGGAGGATAAATAACATGAAGTTCTTAAATCAA
GTTGAAGCTCAAAATATTGATATTGAATTATTCAATGAGTACAAGTTCTC
TATTGAACAGTTGATGGAGCTTGCAGGTCTAAGTGTCGCATGTGCTGTGG
CCAAATCATTTCCGCTTGATTCATTGTTGAATGCAACAAGAAAGAATCGT
ATTTTCGTTTGCTGTGGACCAGGAAATAATGGTGGCGATGGGCTTGTTGC
TGCAAGACATCTCAGACATTTTGGTTATGATCCAGTCGTTTACTATCCCA
AACGGCCAAACAAAGATTTATTTCGTATTTTGACCGAGCAATGCGCTAGA
CAGGGAATTCCATTTTTAGATGAAATGCCCAGTTCTGCTTACATCAGTGA
GAATTACAATTTCGTTGTGGACGCTATTTTTGGGTTCAGTTTTCGAGGGG
ATGTCAGAGCACCTTTTGATATGATTTTGGAAGTGTTGAAATCGATTTCA
GTTCCCATTGCCTCAGTCGATGTTCCCTCAGGTTGGAATGTGGAGAATGG
AAACGCTGAGGGAATTAATCCAGACGTTCTTATTTCATTAACAGCTCCTA
AACTTTGTGCTGCCAAATTCCGTGGTGAAAGACATTATCTCGGTGGTAGA
TTCGTTCCGAAAGCTTTAGAGGATAAATATCATTTAGATTTACCGTTATT
TCCTGACCAAGAATGTGTAGTGCTACTCCCAAAGATTAAATGAATGcata
aacaaacttttaaactGCTTGTAAATCTGGTAAAACGAACAGCAAGTAGA
GTCCCTAGAAGCTGCATTAACCAAAACCCATTAACATTTTCAACAAAGGC
ATATCCTGATTGGAGGATAAATAACATGAAGTTCTTAAATCAAGTTGAAG
CTCAAAATATTGATATTGAATTATTCAATGAGTACAAGTTCTCTATTGAA
CAGTTGATGGAGCTTGCAGGTCTAAGTGTCGCATGTGCTGTGGCCAAATC
ATTTCCGCTTGATTCATTGTTGAATGCAACAAGAAAGAATCGTATTTTCG
TTTGCTGTGGACCAGGAAATAATGGTGGCGATGGGCTTGTTGCTGCAAGA
CATCTCAGACATTTTGGTTATGATCCAGTCGTTTACTATCCCAAACGGCC
AAACAAAGATTTATTTCGTATTTTGACCGAGCAATGCGCTAGACAGGGAA
TTCCATTTTTAGATGAAATGCCCAGTTCTGCTTACATCAGTGAGAATTAC
AATTTCGTTGTGGACGCTATTTTTGGGTTCAGTTTTCGAGGGGATGTCAG
AGCACCTTTTGATATGATTTTGGAAGTGTTGAAATCGATTTCAGTTCCCA
TTGCCTCAGTCGATGTTCCCTCAGGTTGGAATGTGGAGAATGGAAACGCT
GAGGGAATTAATCCAGACGTTCTTATTTCATTAACAGCTCCTAAACTTTG
TGCTGCCAAATTCCGTGGTGAAAGACATTATCTCGGTGGTAGATTCGTTC
CGAAAGCTTTAGAGGATAAATATCATTTAGATTTACCGTTATTTCCTGAC
CAAGAATGTGTAGTGCTACTCCCAAAGATTAAATGAATGcataaacaaac
ttttaaactGCTTGTAAATCTGGTAAAACGAACAGCAAGTAGAGTCCCTA
GAAGCTGCATTAACCAAAACCCATTAACATTTTCAACAAAGGCATATCCT
GATTGGAGGATAAATAACATGAAGTTCTTAAATCAAGTTGAAGCTCAAAA
TATTGATATTGAATTATTCAATGAGTACAAGTTCTCTATTGAACAGTTGA
TGGAGCTTGCAGGTCTAAGTGTCGCATGTGCTGTGGCCAAATCATTTCCG
CTTGATTCATTGTTGAATGCAACAAGAAAGAATCGTATTTTCGTTTGCTG
TGGACCAGGAAATAATGGTGGCGATGGGCTTGTTGCTGCAAGACATCTCA
GACATTTTGGTTATGATCCAGTCGTTTACTATCCCAAACGGCCAAACAAA
GATTTATTTCGTATTTTGACCGAGCAATGCGCTAGACAGGGAATTCCATT
TTTAGATGAAATGCCCAGTTCTGCTTACATCAGTGAGAATTACAATTTCG
TTGTGGACGCTATTTTTGGGTTCAGTTTTCGAGGGGATGTCAGAGCACCT
TTTGATATGATTTTGGAAGTGTTGAAATCGATTTCAGTTCCCATTGCCTC
AGTCGATGTTCCCTCAGGTTGGAATGTGGAGAATGGAAACGCTGAGGGAA
TTAATCCAGACGTTCTTATTTCATTAACAGCTCCTAAACTTTGTGCTGCC
AAATTCCGTGGTGAAAGACATTATCTCGGTGGTAGATTCGTTCCGAAAGC
TTTAGAGGATAAATATCATTTAGATTTACCGTTATTTCCTGACCAAGAAT
GTGTAGTGCTACTCCCAAAGATTAAATGAATGcataaacaaacttttaaa
ctGCTTGTAAATCTGGTAAAACGAACAGCAAGTAGAGTCCCTAGAAGCTG
CATTAACCAAAACCCATTAACATTTTCAACAAAGGCATATCCTGATTGGA
GGATAAATAACATGAAGTTCTTAAATCAAGTTGAAGCTCAAAATATTGAT
ATTGAATTATTCAATGAGTACAAGTTCTCTATTGAACAGTTGATGGAGCT
TGCAGGTCTAAGTGTCGCATGTGCTGTGGCCAAATCATTTCCGCTTGATT
CATTGTTGAATGCAACAAGAAAGAATCGTATTTTCGTTTGCTGTGGACCA
GGAAATAATGGTGGCGATGGGCTTGTTGCTGCAAGACATCTCAGACATTT
TGGTTATGATCCAGTCGTTTACTATCCCAAACGGCCAAACAAAGATTTAT
TTCGTATTTTGACCGAGCAATGCGCTAGACAGGGAATTCCATTTTTAGAT
GAAATGCCCAGTTCTGCTTACATCAGTGAGAATTACAATTTCGTTGTGGA
CGCTATTTTTGGGTTCAGTTTTCGAGGGGATGTCAGAGCACCTTTTGATA
TGATTTTGGAAGTGTTGAAATCGATTTCAGTTCCCATTGCCTCAGTCGAT
GTTCCCTCAGGTTGGAATGTGGAGAATGGAAACGCTGAGGGAATTAATCC
AGACGTTCTTATTTCATTAACAGCTCCTAAACTTTGTGCTGCCAAATTCC
GTGGTGAAAGACATTATCTCGGTGGTAGATTCGTTCCGAAAGCTTTAGAG
GATAAATATCATTTAGATTTACCGTTATTTCCTGACCAAGAATGTGTAGT
GCTACTCCCAAAGATTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054199-exon-scaffold_242-1491911889:312204..312544 | TCONS_00054199-exon-scaffold_242-1491911889:312204..312544 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1510915933:312204..312544 | TCONS_00054199-exon-scaffold_242-1510915933:312204..312544 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1575043694:312204..312544 | TCONS_00054199-exon-scaffold_242-1575043694:312204..312544 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1491911889:313486..313631 | TCONS_00054199-exon-scaffold_242-1491911889:313486..313631 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1510915933:313486..313631 | TCONS_00054199-exon-scaffold_242-1510915933:313486..313631 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1575043694:313486..313631 | TCONS_00054199-exon-scaffold_242-1575043694:313486..313631 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1491911889:313952..314210 | TCONS_00054199-exon-scaffold_242-1491911889:313952..314210 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1510915933:313952..314210 | TCONS_00054199-exon-scaffold_242-1510915933:313952..314210 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1575043694:313952..314210 | TCONS_00054199-exon-scaffold_242-1575043694:313952..314210 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1491911889:314659..315563 | TCONS_00054199-exon-scaffold_242-1491911889:314659..315563 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1510915933:314659..315563 | TCONS_00054199-exon-scaffold_242-1510915933:314659..315563 | Clytia hemisphaerica | exon |
| TCONS_00054199-exon-scaffold_242-1575043694:314659..315563 | TCONS_00054199-exon-scaffold_242-1575043694:314659..315563 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:312204..315563 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004443 | YjeF_N_dom |
Blast
BLAST of TCONS_00054199 vs. Swiss-Prot (Human)
Match: NNRE (NAD(P)H-hydrate epimerase OS=Homo sapiens GN=NAXE PE=1 SV=2) HSP 1 Score: 308.145 bits (788), Expect = 3.945e-100 Identity = 159/277 (57.40%), Postives = 192/277 (69.31%), Query Frame = 2
Query: 167 SRVPRSCINQNPLTFSTKAYPDW----RINN-------------MKFLNQVEAQNIDIELFNEYKFSIEQLMELAGLSVACAVAKSFPLDSLLNATRKNRIFVCCGPGNNGGDGLVAARHLRHFGYDPVVYYPKRPNKDLFRILTEQCARQGIPFLDEMPSSAY-ISENYNFVVDAIFGFSFRGDVRAPFDMILEVLKSISVPIASVDVPSGWNVENGNAEGINPDVLISLTAPKLCAAKFRGERHYLGGRFVPKALEDKYHLDLPLFPDQECVVLL 943
SRVPR I T + ++ P W R+N+ +K+L+Q EAQ +D ELFNEY+FS++QLMELAGLS A A+AK++P S+ + + V CGPGNNGGDGLV ARHL+ FGY+P +YYPKRPNK LF L QC + IPFL EMP+ I E Y VVDAIFGFSF+GDVR PF IL VLK ++VPIAS+D+PSGW+VE GNA GI PD+LISLTAPK A +F G HYLGGRFVP ALE KY L+LP +PD ECV L
Sbjct: 17 SRVPR--IKSQ--TIACRSGPTWWGPQRLNSGGRWDSEVMASTVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSM--SRSPPTVLVICGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELYELVVDAIFGFSFKGDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAGGIQPDLLISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287
The following BLAST results are available for this feature:
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