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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054196 ID=TCONS_00054196|Name=TCONS_00054196|organism=Clytia hemisphaerica|type=transcript|length=3266bpRun BLAST on NCBI protein sequence of TCONS_00054196-protein >TCONS_00054196-protein ID=TCONS_00054196-protein|Name=TCONS_00054196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=686bp ENWLVGSFLFASFSGFVLKIKNYQMDVKEDSKTHPFTCDVCQKQFKKKYNRun BLAST on NCBI transcript from alignment at scaffold_242:255726..267091+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054196 ID=TCONS_00054196|Name=TCONS_00054196|organism=Clytia hemisphaerica|type=transcript|length=11366bp|location=Sequence derived from alignment at scaffold_242:255726..267091+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:255726..267091+ >TCONS_00054196 ID=TCONS_00054196|Name=TCONS_00054196|organism=Clytia hemisphaerica|type=CDS|length=22671bp|location=Sequence derived from alignment at scaffold_242:255726..267091+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054196 vs. Swiss-Prot (Human)
Match: ZN808 (Zinc finger protein 808 OS=Homo sapiens GN=ZNF808 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 6.383e-33 Identity = 124/394 (31.47%), Postives = 179/394 (45.43%), Query Frame = 3
Query: 108 FTCDVCQKQFKKKYNLQVHTRSHTDERPYICKFCKATFRQLTHMKNHIRNVHQKEGIQPKKDDFGCTRCGQRFPSFWRVITHSLAMHKNPTVPLLCMFCQDNFALDSGLLIKHCR-----KEHK-KEIKILETFQEHLLW--RNQGYLQMFGCNLCNKEFATFLYIFEHLENEHGLKAAESTSSPRFQCIFECQKEFSDETQLVKHFIKGHWPEGCSTCISCGKSFDNIIMAKKHFKL------LRCQTLRD--RLQSIGIDLKKVETYEKVGEKTEQCPECDFVCTRKSTMEIHARTHRKEKFYECPICRKKFSHIGNMKKHITIIHEGKSPKKNIEKLLSCHHCDKMFESPSLLERHLITHTGEKPYTCQNCGKTYTTQGNLTIHSKACRGI 1241
+ C VC K F + L VHTR HT ++PY C C F Q +H+ H R +H G +P + C C + F + +H +H P C C F +S L +H R K +K E +++ L+W R G + + C +C+K F Y+ +H G+K ++C EC K FS+ + LV H + H E C C K+F H +L +C + R S + +++ T GEK+ +C CD R S + H R H EK Y+C C K F+ ++ +H I H G+ P K C CDK+F S L+RH I HTGEKPY C CGK ++ + L IH +A GI
Sbjct: 539 YKCTVCNKVFMRNSVLAVHTRIHTAKKPYKCNECGKAFNQQSHLSRH-RRLHT--GEKP----YKCEACDKVFGQKSALESHK-RIHTGEK-PYRCQVCDTAFTWNS-QLARHTRIHTGEKTYKCNECGKTFSYKSSLVWHRRLHGGEKSYKCKVCDKAFVCRSYVAKHTRIHSGMKP--------YKCN-ECSKTFSNRSSLVCH-RRIHSGEKPYKCSECSKTFSQKATLLCHRRLHSGEKPYKCNDCGNTFRHWSSLVYHRRLHT----GEKSYKCTVCDKAFVRNSYLARHIRIHTAEKPYKCNECGKAFNEQSHLSRHHRI-HTGEKPYK-------CEACDKVFSRKSHLKRHRIIHTGEKPYKCNECGKAFSDRSTL-IHHQAIHGI 899 HSP 2 Score: 115.931 bits (289), Expect = 3.962e-26 Identity = 108/379 (28.50%), Postives = 160/379 (42.22%), Query Frame = 3
Query: 108 FTCDVCQKQFKKKYNLQVHTRSHTDERPYICKFCKATFRQLTHMKNHIRNVHQKEGIQPKKDDFGCTRCGQRFPSFWRVITHSLAMHKNPTVPLLCMFCQDNFALDSGLLIKHCRKEHKKEIKILETFQEHLLWRNQGYLQMFGCNLCNKEFATFLYIFEHLENEHGLKAAESTSSPRFQCIFECQKEFSDETQLVKHFIKGHWPEGCSTCISCGKSFDNIIMAKKHFKL------LRCQTLRDRLQSIGIDLKKVETYEKVGEKTEQCPECDFVCTRKSTMEIHARTHRKEKFYECPICRKKFSHIGNMKKHITIIHEGKSPKKNIEKLLSCHHCDKMFESPSLLERHLITHTGEKPYTCQNCGKTYTTQGNLTIHSK 1226
+ CDVC K F K L H R HT E+PY CK C +F + + H R +H G++P + C CG+ F ++ H A+H P C C F S L H++ L T ++ + C +C K FA Y+ H G K ++C EC K F+ ++ L +H I H E C C K F ++H ++ +C+ D + L + GEKT +C EC +R+S++ H R H EK Y+C C F H ++ H + +EK C C+K+F S+L H HT +KPY C CGK + Q +L+ H +
Sbjct: 259 YKCDVCGKLFNHKQYLACHRRCHTGEKPYKCKECGKSFSYKSSLTCHHR-LHT--GVKP----YKCNECGKVFRQNSALVIHK-AIHTGEK-PYKCNECGKAFNQQSHL------SRHQR----LHTG-----------VKPYKCKICEKAFACHSYLANHTRIHSGEKT--------YKCN-ECGKAFNHQSSLARHHIL-HTGEKPYKCEECDKVFSQKSTLERHKRIHTGEKPYKCKVC-DTAFTCNSQLARHRRIH-TGEKTYKCNECRKTFSRRSSLLCHRRLHSGEKPYKCNQCGNTFRHRASLVYHRRL--------HTLEKSYKCTVCNKVFMRNSVLAVHTRIHTAKKPYKCNECGKAFNQQSHLSRHRR 587 HSP 3 Score: 114.39 bits (285), Expect = 1.295e-25 Identity = 106/380 (27.89%), Postives = 157/380 (41.32%), Query Frame = 3
Query: 105 PFTCDVCQKQFKKKYNLQVHTRSHTDERPYICKFCKATFRQLTHMKNHIRNVHQKEGIQPKKDDFGCTRCGQRFPSFWRVITHSLAMHKNPTVPLLCMFCQDNFALDSGLLIKHCRKEHKKEIKILETFQEHLLWRNQGYLQMFGCNLCNKEFATFLYIFEHLENEHGLKAAESTSSPRFQCIFECQKEFSDETQLVKHFIKGHWPEGCSTCISCGKSFDNIIMAKKHFKL------LRCQTLRDRLQSIGIDLKKVETYEKVGEKTEQCPECDFVCTRKSTMEIHARTHRKEKFYECPICRKKFSHIGNMKKHITIIHEGKSPKKNIEKLLSCHHCDKMFESPSLLERHLITHTGEKPYTCQNCGKTYTTQGNLTIHSK 1226
P+ C+ C K F +K L+ H R HT E+PY CK C F + + H R I + + C C + F ++ H +H P C C + F + L+ + + + LE + + C +CNK F + H T+ ++C EC K F+ ++ L +H + H E C +C K F + H ++ RCQ D + L + T GEKT +C EC + KS++ H R H EK Y+C +C K F + KH T IH G P K C+ C K F + S L H H+GEKPY C C KT++ + L H +
Sbjct: 426 PYKCEECDKVFSQKSTLERHKRIHTGEKPYKCKVCDTAFTCNSQLARHRR-------IHTGEKTYKCNECRKTFSRRSSLLCHR-RLHSGEK-PYKCNQCGNTFRHRASLV-------YHRRLHTLE--------------KSYKCTVCNKVFMRNSVLAVHTRIH--------TAKKPYKCN-ECGKAFNQQSHLSRH-RRLHTGEKPYKCEACDKVFGQKSALESHKRIHTGEKPYRCQVC-DTAFTWNSQLAR-HTRIHTGEKTYKCNECGKTFSYKSSLVWHRRLHGGEKSYKCKVCDKAFVCRSYVAKH-TRIHSGMKPYK-------CNECSKTFSNRSSLVCHRRIHSGEKPYKCSECSKTFSQKATLLCHRR 755 HSP 4 Score: 105.531 bits (262), Expect = 5.998e-23 Identity = 106/381 (27.82%), Postives = 156/381 (40.94%), Query Frame = 3
Query: 105 PFTCDVCQKQFKKKYNLQVHTRSHTDERPYICKFCKATFRQLTHMKNHIRNVHQKEGIQPKKDDFGCTRCGQRFPSFWRVITHSLAMHKNPTVPLLCMFCQDNFALDSGLLIKHCRKEHKKEIKILET----FQEHLLWRNQGYL---QMFGCNLCNKEFATFLYIFEHLENEHGLKAAESTSSPRFQCIFECQKEFSDETQLVKHFIKGHWPEGCSTCISCGKSFDNIIMAKKHFKLLRCQTLRDRLQSIGIDLKKVETYEKVGEKTEQCPECDFVCTRKSTMEIHARTHRKEKFYECPICRKKFSHIGNMKKHITIIHEGKSPKKNIEKLLSCHHCDKMFESPSLLERHLITHTGEKPYTCQNCGKTYTTQGNLTIHSK 1226
P+ C+ C K F++ L +H HT E+PY C C F Q +H+ H R +H G++P + C C + F + H+ T C C F S L H +K K E Q+ L R++ + + C +C+ F + H G K ++C EC+K FS + L+ H + H E C CG +F + H +L TL EK+ +C C+ V R S + +H R H +K Y+C C K F+ ++ +H +H G+ P K C CDK+F S LE H HTGEKPY CQ C +T L H++
Sbjct: 314 PYKCNECGKVFRQNSALVIHKAIHTGEKPYKCNECGKAFNQQSHLSRHQR-LHT--GVKP----YKCKICEKAFACHSYLANHTRIHSGEKTYK--CNECGKAFNHQSSLARHHILHTGEKPYKCEECDKVFSQKSTLERHKRIHTGEKPYKCKVCDTAFTCNSQLARHRRIHTGEKT--------YKCN-ECRKTFSRRSSLLCH-RRLHSGEKPYKCNQCGNTFRHRASLVYHRRL---HTL---------------------EKSYKCTVCNKVFMRNSVLAVHTRIHTAKKPYKCNECGKAFNQQSHLSRH-RRLHTGEKPYK-------CEACDKVFGQKSALESHKRIHTGEKPYRCQVCDTAFTWNSQLARHTR 643 The following BLAST results are available for this feature:
BLAST of TCONS_00054196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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