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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054158 ID=TCONS_00054158|Name=TCONS_00054158|organism=Clytia hemisphaerica|type=transcript|length=1218bp
TAGAAAacagattttttaaacattggcTCGCTTTGAGTCCATCTCCATTC
TAGAAAAGGACTTTGTTGTAAGAGCTCGATTTGAACTTCATATTCAGACT
TTGGTATTGACAATCGATGCAAATTATTTAGTCGCTCGGATGATTGGTAC
CCCGCACCAAGCTCGACTCAagttctgataaaaaaattgacgtcacttaC
GTCAAAAGAATTCTATAAACGTTAAAAAAGccaatgcaacgacttcgatT
ACACAGAAGAAAAATCAACACAGCACAAGTCGATCACGTCTTTTGAGTTC
AGTTATTGGTTGTTTTGACATCTTCAATCAAATTAACATCTTATCACTGG
AACTTCAAAATGGCTCAAACTGACGCCGCGCCACTACCTAAACATGTTTA
CGAGAACGCCAATCCTGCCGATAACTCTCAAGAATATGTCATAAGTAGAG
AAACCTTGAACGACAATACACCGAAAGTGCGAAGACCCACAAAATACAAT
GTTAATGAGCAATCGTTGCCTTTATTTCAAATGGTTTGTGAAAAATGTGA
AGAAGTTTCAGACAAAATTGCTGATTTCGTTCCAGTTTGGGATGGATTAG
TTGGTAAAATGCAGGATATTTCTGGTATGCGTAAAAGATACATCTTAGCT
CTTTTTTTTTGCTCTCCACTCTTCGTTTTGGGGTTGATCTTGGCGTCACC
AATCTTGGCACCAATGCTTTTATTGATCTATCCTATGATAATGTCAGTCA
AAGCGATCGAGCATAAACAAGAAGCACGCACTAGATGGCTCATTTATTGG
CTTTTCTATAACGCCATCACTATAAGtgAACAATTTATCGGTCCATTTCT
TCATGTCATGCCTGGATATGCTTTTGGTAAAGGACTTTTCTTCGTCTGGT
GTTTAGTGCCATTCAACGAAAACGGATGTTACTACGCTTACCATATCGTC
CGTCCGTTATTAATCATACCTGTCcgaaaaattgatgaatataTTATGGT
GTccattaataaaatcaaaaacattgttCACGACAACCAAGACTTAGCAG
CAAATTGGACTTTGAATGCTGCCACTTTGGCTGGTAATATGCTGGccaat
aaacaaaaataaataacagaaaaaggaaatttaacgttatcaacaacatt
tttatataataccaatattatgtgtttttttttaccgTGAATTATATGTT
CCACTTTCATTCAATGCG Run BLAST on NCBI protein sequence of TCONS_00054158-protein >TCONS_00054158-protein ID=TCONS_00054158-protein|Name=TCONS_00054158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MAQTDAAPLPKHVYENANPADNSQEYVISRETLNDNTPKVRRPTKYNVNE
QSLPLFQMVCEKCEEVSDKIADFVPVWDGLVGKMQDISGMRKRYILALFF
CSPLFVLGLILASPILAPMLLLIYPMIMSVKAIEHKQEARTRWLIYWLFY
NAITISEQFIGPFLHVMPGYAFGKGLFFVWCLVPFNENGCYYAYHIVRPL
LIIPVRKIDEYIMVSINKIKNIVHDNQDLAANWTLNAATLAGNMLANKQK Run BLAST on NCBI transcript from alignment at scaffold_242:47183..51561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054158 ID=TCONS_00054158|Name=TCONS_00054158|organism=Clytia hemisphaerica|type=transcript|length=4379bp|location=Sequence derived from alignment at scaffold_242:47183..51561+ (Clytia hemisphaerica)
TAGAAAacagattttttaaacattggcTCGCTTTGAGTCCATCTCCATTC
TAGAAAAGGACTTTGTTGTAAGAGCTCGATTTGAACTTCATATTCAGACT
TTGGTATTGACAATCGATGCAAATTATTTAGGTTACCATTTCATTCGGTT
TTTTAATCTCAATATCAACAAATTCTCTTGTCTCTCCAACTACAAAACTT
TTGTTTAATTTATGAATTTCTATACAtagcaatttttatttttagaatgc
CAACTGCCCGCTCGAAATTGGAAACGGGGATCAGGGTCCATTTTTTTAGG
TTCTGAAGATATCTGTCAGGGTCtcaaatttattaatttattaattttca
agatATGTACCTGACAGGGTCGGCTTTTGGTTATAtatggacaattttca
gggtagaaataagaaaatctttcatCTTTCATCTATATGTcctcattttt
gccacttttcatgGTGAAAATGGAAcagttttcgatttttcgttccGACA
GATTCCAAAATTTTACCAAACATttatatctgacagggtccactttttaA
ACTCCAGCGGCGCGTCTCATTCAGCCGTCAAAGTCAGTGCCCCCGGGTCa
actacagtatatggcccccaaaacggagacggcccccaaaacggaggttg
tcattaaaatgaggattctgacttgtagatttatcagaattaaacaattt
ttgtttattttgaaagaatgatggttacaCTAAAAAATGagtatgttttt
gatggtttgagacagattcaaaataacatatttgcgaaTGAAGGAGATAT
TTTAACactaaaattaaataaaaattgcatataactcactctagctcctt
ggatattggaaataagttatgaaaatggggtataggaaactttctacacc
taatgccgttcagaaaatgcagatacatctgtgactttggAGGATGGGtt
aaagatatagcatcttaaaggtcaaccagtattttgggaccctagaatca
gcattgataaaaccgaaaattctaaaaatgagaaacagcaaaaaatgttg
gaattccattcctatcaggttgagttaatagcttataacaaaaaattaac
attatatataaaaattttcgctgaatcagcaaaaatggcaaattctgtca
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAAGTTTTGCAtgcaagaaaaatttttgtaaaacg
tcttttcctctagctttgagagaaattttaaatttgatcgccgttttggg
ggccacatactgtatagACTTTTTTGAACGGTTAAAAACTCCAGTACCTA
AGATATGACAAACTAATAATACACACAGTACAACCACATTTAAAATGTAC
CAGtggagtttttttagtttttttcactcTTTTGACTATACAATAGTATT
CCTGCTAGTTTTATGAGTTAAATTGATATCGTGGTCTGTTCTGAGACTTA
CGTTTTCTTCATTAATCGTGAAGTTGCAATTTTATAAAGAGGAGGGCAAT
TGAGGGAGTTAGTTTTTTTGGCGTCCTCGTACTagggaaaaagtttttga
ataagTACTTGCGCGGAACAAGTTCGAACTTTTccttattttgaataata
agaTCTGCTATTTGTAGGGAAGCACAACCAGCGTCACCGAAGTTAGTGTT
CCAGGCAGCGTTTGATGTATTAACGACGCCCCACCAAAGAAGGCTGGTGA
GGGGTACTACCCCCCCGTCATCACGCTACTGTTAACTGGAAATCCTTTAT
ACTGATTTACATCGAAAAACGGTTGATTTCATGATgggaaaatctaaaat
aaacaCAAAACAGTGAATAAATATGCTGTCTAAGTTGAAGCTAGCACTAG
GATTTATTGATGGCAGGAAAGTTTTGTAGCTTTGCttggattttcttttt
gaaacatGGTTATTGGTCCTCGAACCTTCTACGCTGTTTTGTAAATGGtt
taaaaaacaatcaaatgttttttctttatgattttcagTCGCTCGGATGA
TTGGTACCCCGCACCAAGCTCGACTCAagttctgataaaaaaattgacgt
cacttaCGTCAAAAGAATTCTATAAACGTTAAAAAAGccaatgcaacgac
ttcgatTACACAGAAGAAAAATCAACACAGCACAAGTCGATCACGTCTTT
TGAGTTCAGTTATTGGTTGTTTTGACATCTTCAATCAAATTAACATCTTA
TCACTGGAACTTCAAAATGGCTCAAACTGACGCCGCGCCACTACCTAAAC
ATGTTTACGAGAACGCCAATCCTGCCGATAACTCTCAAGAATATGTCATA
AGTAGAGAAACCTTGAACGACAATACACCGAAAGTGCGAAGACCCACAAA
ATACAATGTTAATGAGCAATCGTTGCCTTTATTTCAAATGGTTTGTGAAA
AATGTGAAGAAGTTTCAGACAAAATTGCTGATTTCGTTCCAGTTTGGGAT
GGATTAGTTGGTAAAATGCAGGATATTTCTGGTATGCGTAAAAGATACAT
CTTAGCTCTTTTTGTAAgttgaaatttcttttcccaTTATTCTACTGGAT
TTATTAGCCAAAAAAAGGGATATATGTATAAAGATACATAAAATGTATAA
GAAAGGATAGATATTCTTGCGCAACAGGAAACCCGTCCGTATATTTTTGC
AAACCCCTAAATCATAGCCTTTCATAGTCAAGTGCTCTTTTATGAACTTC
TTTTTGAATAAGTTACTATTGAATTACATTTCATGATGACAAAGGTAGGC
TCTGCTCGTGAGAAGGACCGACTTGAAGCTTGGGTTTTCTCCAAGGTTTT
ATTGGACtgtttcgatatttttttctgaaatcatCTTCATCCAAAATTCT
TACTCTCTACCTTTATAGTTTTGCTCTCCACTCTTCGTTTTGGGGTTGAT
CTTGGCGTCACCAATCTTGGCACCAATGCTTTTATTGATCTATCCTATGA
TAATGTCAGTCAAAGCGATCGAGCATAAACAAGAAGCACGCACTAGATGG
CTCATTTATTGGCTTTTCTATAACGCCATCACTATAAGGTATATACTTTG
TTGTCGTTTTAATGTTTCGGCGGGTTATATCCTTGAAATAGTTTTTATGA
CAAAACATTTTATAGGGTATCGTTGGCAGTCTAAGGTATGGGTGTTGTTC
TGTTCTCTGCTGTTTATCAGTGTGCAAAAGCAACAGTCTGAGCATTCTCA
ACATCCCTTTTGTTATAAAATAACACTTACTACTAAAGATACTGGCAGCT
TAAAAACTTCTCGtgtggtttttgtttttgtacaaTTACGCTCTCACTTT
GTCTTTCTCGCTTTCttatattgtaaaatatttcgTTCATAAAATGggga
aatatttaacaatgcTCGTTTTCTGGTTGTGCTCAAAACACATTTTCATG
GTTTATGCCTGTAAAGGAGGTCTAAGCAAATGATAACTATATTGTGAAGC
CTTAATCCCTTATGTGtatatattttctatttttcagtgAACAATTTATC
GGTCCATTTCTTCATGTCATGCCTGGATATGCTTTTGGTAAAGGACTTTT
CTTCGTCTGGTGTTTAGTGCCATTCAACGAAAACGGATGTTACTACGCTT
ACCATATCGTCCGTCCGTTATTAATCATACCTGTCcgaaaaattgatgaa
tataTTATGGTGTccattaataaaatcaaaaacattgttCACGACAACCA
AGACTTAGCAGCAAATTGGACTTTGAATGCTGCCACTTTGGCTGGTAATA
TGCTGGccaataaacaaaaataaataacagaaaaaggaaatttaacgtta
tcaacaacatttttatataataccaatattatgtgtttttttttaccgTG
AATTATATGTTCCACTTTCATTCAATGCG Coding sequence (CDS) from alignment at scaffold_242:47183..51561+ >TCONS_00054158 ID=TCONS_00054158|Name=TCONS_00054158|organism=Clytia hemisphaerica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_242:47183..51561+ (Clytia hemisphaerica)
ATGGCTCAAACTGACGCCGCGCCACTACCTAAACATGTTTACGAGAACGC
CAATCCTGCCGATAACTCTCAAGAATATGTCATAAGTAGAGAAACCTTGA
ACGACAATACACCGAAAGTGCGAAGACCCACAAAATACAATGTTAATGAG
CAATCGTTGCCTTTATTTCAAATGGTTTGTGAAAAATGTGAAGAAGTTTC
AGACAAAATTGCTGATTTCGTTCCAGTTTGGGATGGATTAGTTGGTAAAA
TGCAGGATATTTCTGGTATGCGTAAAAGATACATCTTAGCTCTTTTTTTT
TGCTCTCCACTCTTCGTTTTGGGGTTGATCTTGGCGTCACCAATCTTGGC
ACCAATGCTTTTATTGATCTATCCTATGATAATGTCAGTCAAAGCGATCG
AGCATAAACAAGAAGCACGCACTAGATGGCTCATTTATTGGCTTTTCTAT
AACGCCATCACTATAAGtgAACAATTTATCGGTCCATTTCTTCATGTCAT
GCCTGGATATGCTTTTGGTAAAGGACTTTTCTTCGTCTGGTGTTTAGTGC
CATTCAACGAAAACGGATGTTACTACGCTTACCATATCGTCCGTCCGTTA
TTAATCATACCTGTCcgaaaaattgatgaatataTTATGGTGTccattaa
taaaatcaaaaacattgttCACGACAACCAAGACTTAGCAGCAAATTGGA
CTTTGAATGCTGCCACTTTGGCTGGTAATATGCTGGccaataaacaaaaa
taaATGGCTCAAACTGACGCCGCGCCACTACCTAAACATGTTTACGAGAA
CGCCAATCCTGCCGATAACTCTCAAGAATATGTCATAAGTAGAGAAACCT
TGAACGACAATACACCGAAAGTGCGAAGACCCACAAAATACAATGTTAAT
GAGCAATCGTTGCCTTTATTTCAAATGGTTTGTGAAAAATGTGAAGAAGT
TTCAGACAAAATTGCTGATTTCGTTCCAGTTTGGGATGGATTAGTTGGTA
AAATGCAGGATATTTCTGGTATGCGTAAAAGATACATCTTAGCTCTTTTT
TTTTGCTCTCCACTCTTCGTTTTGGGGTTGATCTTGGCGTCACCAATCTT
GGCACCAATGCTTTTATTGATCTATCCTATGATAATGTCAGTCAAAGCGA
TCGAGCATAAACAAGAAGCACGCACTAGATGGCTCATTTATTGGCTTTTC
TATAACGCCATCACTATAAGtgAACAATTTATCGGTCCATTTCTTCATGT
CATGCCTGGATATGCTTTTGGTAAAGGACTTTTCTTCGTCTGGTGTTTAG
TGCCATTCAACGAAAACGGATGTTACTACGCTTACCATATCGTCCGTCCG
TTATTAATCATACCTGTCcgaaaaattgatgaatataTTATGGTGTccat
taataaaatcaaaaacattgttCACGACAACCAAGACTTAGCAGCAAATT
GGACTTTGAATGCTGCCACTTTGGCTGGTAATATGCTGGccaataaacaa
aaataaATGGCTCAAACTGACGCCGCGCCACTACCTAAACATGTTTACGA
GAACGCCAATCCTGCCGATAACTCTCAAGAATATGTCATAAGTAGAGAAA
CCTTGAACGACAATACACCGAAAGTGCGAAGACCCACAAAATACAATGTT
AATGAGCAATCGTTGCCTTTATTTCAAATGGTTTGTGAAAAATGTGAAGA
AGTTTCAGACAAAATTGCTGATTTCGTTCCAGTTTGGGATGGATTAGTTG
GTAAAATGCAGGATATTTCTGGTATGCGTAAAAGATACATCTTAGCTCTT
TTTTTTTGCTCTCCACTCTTCGTTTTGGGGTTGATCTTGGCGTCACCAAT
CTTGGCACCAATGCTTTTATTGATCTATCCTATGATAATGTCAGTCAAAG
CGATCGAGCATAAACAAGAAGCACGCACTAGATGGCTCATTTATTGGCTT
TTCTATAACGCCATCACTATAAGtgAACAATTTATCGGTCCATTTCTTCA
TGTCATGCCTGGATATGCTTTTGGTAAAGGACTTTTCTTCGTCTGGTGTT
TAGTGCCATTCAACGAAAACGGATGTTACTACGCTTACCATATCGTCCGT
CCGTTATTAATCATACCTGTCcgaaaaattgatgaatataTTATGGTGTc
cattaataaaatcaaaaacattgttCACGACAACCAAGACTTAGCAGCAA
ATTGGACTTTGAATGCTGCCACTTTGGCTGGTAATATGCTGGccaataaa
caaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054158-exon-scaffold_242-1491911889:47183..47313 | TCONS_00054158-exon-scaffold_242-1491911889:47183..47313 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1510915933:47183..47313 | TCONS_00054158-exon-scaffold_242-1510915933:47183..47313 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1575043694:47183..47313 | TCONS_00054158-exon-scaffold_242-1575043694:47183..47313 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1491911889:49671..50195 | TCONS_00054158-exon-scaffold_242-1491911889:49671..50195 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1510915933:49671..50195 | TCONS_00054158-exon-scaffold_242-1510915933:49671..50195 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1575043694:49671..50195 | TCONS_00054158-exon-scaffold_242-1575043694:49671..50195 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1491911889:50551..50720 | TCONS_00054158-exon-scaffold_242-1491911889:50551..50720 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1510915933:50551..50720 | TCONS_00054158-exon-scaffold_242-1510915933:50551..50720 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1575043694:50551..50720 | TCONS_00054158-exon-scaffold_242-1575043694:50551..50720 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1491911889:51170..51561 | TCONS_00054158-exon-scaffold_242-1491911889:51170..51561 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1510915933:51170..51561 | TCONS_00054158-exon-scaffold_242-1510915933:51170..51561 | Clytia hemisphaerica | exon |
| TCONS_00054158-exon-scaffold_242-1575043694:51170..51561 | TCONS_00054158-exon-scaffold_242-1575043694:51170..51561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:47183..51561 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004345 | TB2_DP1_HVA22 |
Blast
The following BLAST results are available for this feature:
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