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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=transcript|length=1627bp
AAAATGTATGTAGCTAATCAGTATCCACAAAACAGAAATCAAGATTTGCC
AAGGTTTTGGAGTCAATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgA
CTTAATGATaagaagaacatttttgaaaatggctgaaaaacaaCTGCATC
GTTTCATTGATATTGGTGTCAATTTGACCGATCCAGTATTCAATGGTGTT
TATCATGGAAAAAAAGCTCATGAAGATGACTTCTCTATCATGATGCAAAG
AGCAAAAGATATTGgtatgaaaaaaatgatgataaCAGTTGGGCATCTTG
AAGAAGCACCTGCTGCACTTGATTTAGTAAAAACCGATGAGAGTTTATTT
TGTACCATTGGATGTCATCCAACCAGGTGTAATGCATTTGAGAAAGATAC
AACACCTGAGGAATATTACAGAAAACTTCTTGAAATAGCTACACAGAACA
AAGATAAAGTTGTTGCAATTGGAGAATGTGGTTTAGATTATGATAGGGAA
CATTTCTGTCCAAGAGAGActcaaaagaaatattttgaaaaacaatttga
tTTAGCTGCTGAAACTAAATTGCCAATGTTTCTTCACATGAGAAATGCAG
GTGATGATTTTGTGGATATTTATAAGCGAAATATGGATAAAGTTAATGGT
GGTGTTGCTCACTGTTTCACTGGAACTGCTGAAGAAGCAAAAACACTTCT
TGATCTTGGTTTGTACATAGGAATAACAGGTTGTTCCNACAACACCTGAG
GAATATTACGGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGT
TGTTGCAATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTTTGTC
CAAGAGAGActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCT
GAAACTAAATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTT
TGTGGATATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTC
ACTGTTTCACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGT
TTGTACATTGGAATAACAGGTTGTTCCCTGAAAACGgaagaaaatcttga
aattttgaaaacaattccGTCAGAAAGATTAATGGTTGAAACAGACGCTC
CTTGGTGCGAAGTCAAAAATACACATGCTGGCTCAAAGTATGTGAAAACT
AAATTCCAaaccaaaaagaaagaaaaatgggacGCTGGTTGTTGTGTTAA
ATCTCGCAATGAGCCCTGTCATATTATACAAGTTCTTGAAATTATGGCAG
CTGTCAGAGGTGAAGACCCTAAAGAACTTGCAGAAATTATGtttgaaaat
actgaaaaattgttttttaaatgaGAATTTGAATAGAATTTTTACGAAAA
tagattttttgattattttttagaataatgATTGGTACCAAAACTAAAAC
TAGCACATCAtaagtttaaattttgatacaccttttcaaccgtagccaCC
AATCGCCGCGTGAGCATTTATTTGTCCATTTTACCACTCTAAAACCGCCC
CATtcttttttttcgcacctatagacaatagaaaaaggtgtcaaaaaagg
attggatcgagtttaggggaaaAAAAG Run BLAST on NCBI protein sequence of TCONS_00054154-protein >TCONS_00054154-protein ID=TCONS_00054154-protein|Name=TCONS_00054154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MFQRAKIQYCQDLMIRRTFLKMAEKQLHRFIDIGVNLTDPVFNGVYHGKK
AHEDDFSIMMQRAKDIGMKKMMITVGHLEEAPAALDLVKTDESLFCTIGC
HPTRCNAFEKDTTPEEYYRKLLEIATQNKDKVVAIGECGLDYDREHFCPR
ETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHC
FTGTAEEAKTLLDLGLYIGITGCSXNT Run BLAST on NCBI transcript from alignment at scaffold_242:24289..26098+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_242:24289..26098+ (Clytia hemisphaerica)
AAAATGTATGTAGCTAATCAGTATCCACAAAACAGAAATCAAGATTTGCC
AAGGTTTTGGAGTCAATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgg
ttgcatatgttttgcatatttttccaCTAAATCCAACCACCACACTTTTT
CCTGTAATTTTGTATATAATCTAAGATAGCGGATGAAAAGCCTATTACAG
TGTATAACACAACACACAGTTGCAATTCATGCCATTTAATACttgtaaaa
gttttaaaactaGTGCTTAACCTTTGTTTTAGACTTAATGATaagaagaa
catttttgaaaatggctgaaaaacaaCTGCATCGTTTCATTGATATTGGT
GTCAATTTGACCGATCCAGTATTCAATGGTGTTTATCATGGAAAAAAAGC
TCATGAAGATGACTTCTCTATCATGATGCAAAGAGCAAAAGATATTGgta
tgaaaaaaatgatgataaCAGTTGGGCATCTTGAAGAAGCACCTGCTGCA
CTTGATTTAGTAAAAACCGATGAGAGTTTATTTTGTACCATTGGATGTCA
TCCAACCAGGTGTAATGCATTTGAGAAAGATACAACACCTGAGGAATATT
ACAGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTGCA
ATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTCTGTCCAAGAGA
GActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCTGAAACTA
AATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGGAT
ATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTT
CACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACA
TAGGAATAACAGGTTGTTCCNACAACACCTGAGGAATATTACGGAAAACT
TCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTGCAATTGGAGAAT
GTGGTTTAGATTATGATAGGGAACATTTTTGTCCAAGAGAGActcaaaag
aaatattttgaaaaacaatttgatTTAGCTGCTGAAACTAAATTGCCAAT
GTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGGATATTTATAAGC
GAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTTCACTGGAACT
GCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACATTGGAATAAC
AGGTTGTTCCCTGAAAACGgaagaaaatcttgaaattttgaaaacaattc
cGTCAGAAAGATTAATGGTTGAAACAGACGCTCCTTGGTGCGAAGTCAAA
AATACACATGCTGGCTCAAAGTATGTGAAAACTAAATTCCAaaccaaaaa
gaaagaaaaatgggacGCTGGTTGTTGTGTTAAATCTCGCAATGAGCCCT
GTCATATTATACAAGTTCTTGAAATTATGGCAGCTGTCAGAGGTGAAGAC
CCTAAAGAACTTGCAGAAATTATGtttgaaaatactgaaaaattgttttt
taaatgaGAATTTGAATAGAATTTTTACGAAAAtagattttttgattatt
ttttagaataatgATTGGTACCAAAACTAAAACTAGCACATCAtaagttt
aaattttgatacaccttttcaaccgtagccaCCAATCGCCGCGTGAGCAT
TTATTTGTCCATTTTACCACTCTAAAACCGCCCCATtcttttttttcgca
cctatagacaatagaaaaaggtgtcaaaaaaggattggatcgagtttagg
ggaaaAAAAG Coding sequence (CDS) from alignment at scaffold_242:24289..26098+ >TCONS_00054154 ID=TCONS_00054154|Name=TCONS_00054154|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_242:24289..26098+ (Clytia hemisphaerica)
ATGTTTCAAAGAGCCAAAATCCAGTATTGCCAAgACTTAATGATaagaag
aacatttttgaaaatggctgaaaaacaaCTGCATCGTTTCATTGATATTG
GTGTCAATTTGACCGATCCAGTATTCAATGGTGTTTATCATGGAAAAAAA
GCTCATGAAGATGACTTCTCTATCATGATGCAAAGAGCAAAAGATATTGg
tatgaaaaaaatgatgataaCAGTTGGGCATCTTGAAGAAGCACCTGCTG
CACTTGATTTAGTAAAAACCGATGAGAGTTTATTTTGTACCATTGGATGT
CATCCAACCAGGTGTAATGCATTTGAGAAAGATACAACACCTGAGGAATA
TTACAGAAAACTTCTTGAAATAGCTACACAGAACAAAGATAAAGTTGTTG
CAATTGGAGAATGTGGTTTAGATTATGATAGGGAACATTTCTGTCCAAGA
GAGActcaaaagaaatattttgaaaaacaatttgatTTAGCTGCTGAAAC
TAAATTGCCAATGTTTCTTCACATGAGAAATGCAGGTGATGATTTTGTGG
ATATTTATAAGCGAAATATGGATAAAGTTAATGGTGGTGTTGCTCACTGT
TTCACTGGAACTGCTGAAGAAGCAAAAACACTTCTTGATCTTGGTTTGTA
CATAGGAATAACAGGTTGTTCCNACAACACCTGAATGTTTCAAAGAGCCA
AAATCCAGTATTGCCAAgACTTAATGATaagaagaacatttttgaaaatg
gctgaaaaacaaCTGCATCGTTTCATTGATATTGGTGTCAATTTGACCGA
TCCAGTATTCAATGGTGTTTATCATGGAAAAAAAGCTCATGAAGATGACT
TCTCTATCATGATGCAAAGAGCAAAAGATATTGgtatgaaaaaaatgatg
ataaCAGTTGGGCATCTTGAAGAAGCACCTGCTGCACTTGATTTAGTAAA
AACCGATGAGAGTTTATTTTGTACCATTGGATGTCATCCAACCAGGTGTA
ATGCATTTGAGAAAGATACAACACCTGAGGAATATTACAGAAAACTTCTT
GAAATAGCTACACAGAACAAAGATAAAGTTGTTGCAATTGGAGAATGTGG
TTTAGATTATGATAGGGAACATTTCTGTCCAAGAGAGActcaaaagaaat
attttgaaaaacaatttgatTTAGCTGCTGAAACTAAATTGCCAATGTTT
CTTCACATGAGAAATGCAGGTGATGATTTTGTGGATATTTATAAGCGAAA
TATGGATAAAGTTAATGGTGGTGTTGCTCACTGTTTCACTGGAACTGCTG
AAGAAGCAAAAACACTTCTTGATCTTGGTTTGTACATAGGAATAACAGGT
TGTTCCNACAACACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054154-exon-scaffold_242-1491911889:24289..24387 | TCONS_00054154-exon-scaffold_242-1491911889:24289..24387 | Clytia hemisphaerica | exon |
| TCONS_00054154-exon-scaffold_242-1510915933:24289..24387 | TCONS_00054154-exon-scaffold_242-1510915933:24289..24387 | Clytia hemisphaerica | exon |
| TCONS_00054154-exon-scaffold_242-1575043694:24289..24387 | TCONS_00054154-exon-scaffold_242-1575043694:24289..24387 | Clytia hemisphaerica | exon |
| TCONS_00054154-exon-scaffold_242-1491911889:24571..26098 | TCONS_00054154-exon-scaffold_242-1491911889:24571..26098 | Clytia hemisphaerica | exon |
| TCONS_00054154-exon-scaffold_242-1510915933:24571..26098 | TCONS_00054154-exon-scaffold_242-1510915933:24571..26098 | Clytia hemisphaerica | exon |
| TCONS_00054154-exon-scaffold_242-1575043694:24571..26098 | TCONS_00054154-exon-scaffold_242-1575043694:24571..26098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:24289..26098 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016788 | hydrolase activity, acting on ester bonds |
| GO:0016888 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016888 |
endodeoxyribonuclease activity, producing 5'-phosphomonoesters |
| molecular_function |
GO:0016788 |
hydrolase activity, acting on ester bonds |
Blast
BLAST of TCONS_00054154 vs. Swiss-Prot (Human)
Match: TATD1 (Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2) HSP 1 Score: 260.381 bits (664), Expect = 1.475e-81 Identity = 126/201 (62.69%), Postives = 153/201 (76.12%), Query Frame = 1
Query: 739 TTPEEYYGKLLEIATQNKDKVVAIGECGLDYDREHFCPRETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHCFTGTAEEAKTLLDLGLYIGITGCSLKTEENLEILKTIPSERLMVETDAPWCEVKNTHAGSXXXXXXXXXXXXXXWDAGCCVKSRNEPCHIIQVLEIMAAVRGEDPKELAEIM 1341
P+ Y +LL +A NK KVVAIGECGLD+DR FCP++TQ KYFEKQF+L+ +TKLPMFLH RN+ +F+DI KRN D+ GGV H F GT E A L+DL LYIG GCSLKTE NLE+LK+IPSE+LM+ETDAPWC VK+THAGS + K+KW++G C+K RNEPCHIIQ+LEIM+AVR EDP ELA +
Sbjct: 87 NNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGS--KYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTL 285 HSP 2 Score: 243.047 bits (619), Expect = 4.592e-75 Identity = 114/199 (57.29%), Postives = 147/199 (73.87%), Query Frame = 3
Query: 150 RFIDIGVNLTDPVFNGVYHGKKAHEDDFSIMMQRAKDIGMKKMMITVGHLEEAPAALDLVKTDESLFCTIGCHPTRCNAFEKDTTPEEYYRKLLEIATQNKDKVVAIGECGLDYDREHFCPRETQKKYFEKQFDLAAETKLPMFLHMRNAGDDFVDIYKRNMDKVNGGVAHCFTGTAEEAKTLLDLGLYIGITGCSXNT 746
+FIDIG+NLTDP+F G+Y G + H+DD ++ RA +IG+KK MIT G+L+++ AL L +T+ F T+GCHPTRC FEK+ P+ Y ++LL +A NK KVVAIGECGLD+DR FCP++TQ KYFEKQF+L+ +TKLPMFLH RN+ +F+DI KRN D+ GGV H F GT E A L+DL LYIG GCS T
Sbjct: 5 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTNGMFFSTVGCHPTRCGEFEKNN-PDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKT 202
The following BLAST results are available for this feature:
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