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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054153 ID=TCONS_00054153|Name=TCONS_00054153|organism=Clytia hemisphaerica|type=transcript|length=2655bp
ttttaataaaataatacaTCTTTTGAAATCTCTTGAAACATATTTTGAAG
ACTATTAATCGGAAATTGAGTATCAGATTTgtgaaataaagaaaacattg
gaGATATTACATAatccaaaaacattatttacatAGCATCACTCTTCCAA
GAATTGAAGATATCAATATTTCACAGCAACAAACATTCCTACCATCTGTT
CTACTGAGCTTCTAGCCTAATACCTAATAAACATAACTTTGTATAACAAG
GACAACTTTTGGAAAAGAAGAAGGTATGTTTTAAAGGCAACCGTCCCACT
TAAACGGGAAACCCAAATGTTTGCTAGCACCAGGGGGAAAGGGCACTCAA
AGTAAATGACCTAcagtacgtgcggcccttaaacACGGGTATGTTTTCAA
GAtcaaaaaaatgcactgtaagggtagggtTGTCGTAGAGCTGCACTGCA
AGGGGAGGTTTTTATACCTTATTATTTATTCCTTTTATAATGGGACCCCT
CCACTTCCTTTCGATGAAAACAAGACGAGCAAATCAAATGGacaaacaat
aataaaaatatacagCTCGGTTAACACAAGAtcgacaaaaaataaaaatg
atcaTAAATTTTTAACCTAAATGTCAGAAATTTTTACTAGTCGGGCCGTT
CGAAAATTGGTGGTTTTAATCAATGGAATAAATTTTCGCAAGAATGAGTC
AAAACTgataaaattgatgaaaaattgtaaaactttttaatctaattttt
ttggaGTTGATTTGCGGAGGAATACTTTGATGTCAGAAATTTTCGcgtcc
agaaaatttcgcgattttcgcgaatggCCCCTGAATTCGAGAAATTAAAA
TTCcgcgaaaaaaattgttttagctgattcgcgaaaattaattccaaaAA
ATACAGTTTTCAGATTATCTTGatcttttttgcttttagaACATAAAAAC
AGTCTATTAAACCTACTTTACTAGTGTTTTTGTCTGGAAAATCCATTTTC
GCAATAATCAATTCCAgtgaaataaataaatcttgctgattcgcgaaatt
aaattccttgAGAACAcgcgaaatttcgcgaataGCCCGAGTCGCAAAAT
TTTCTAGACGCGAAAATTTCTGACATCAAAGtagttgaaaataatttttc
gtcAATGAGGAACTTTCATACGCACGTCCTTCCTTTGAGTGATTTCCCCT
AAAAAACAACGCGTCTCTCAATTGAAGGACGGTTGAGGTTTAGCGTCCCT
CGATTGAAAAGTTTGTTTTAAATTTATATCGGGCACTTACTAACAAGAAG
GACACTCCGAGTCTTATACTGTCGTAAACTAGAAAAAATTTAGCGACGAT
TGACCTAAGGATTATTAAATTGACTCAGGACAACTTTTTTAATGGTCCTC
CAAAAGTTTTGTACCAACCCCACTGCGTATAAGATTTTCACAGTAAACAA
CACAGACatctaaaaaattgagaaattgtaTATCTGTGCCAAAAATCAAT
TCAACAACTGTCCCTTGATTGGGGGAAATGCTATGAAAGTCCTGCACTGT
TCGTGACCATTTCATTTGACAAATTTCAGCGTACAAAAATCGCAAAACTT
TCTGACATAAAATATAACACAAGAAAAACTATGCTAAAAAAAAGCTTCAT
ACcttcagaaaatcaaaacaaatttagaAATCTTCATTTTGTTCAGATTT
GTTTGTGTTTTTAGTAAAACGCATATTCTAGCTGGTCGGTGGTAGGCAAA
AAGTTTGTGATGCCGTTATGAAGATTTTTATCGTGGGTTCCTTTCATAGT
AAAGAAGATTTCTGTGAAGTTTCATTAATATAGAACTTCTGGATCTAAAG
TTATTCAtacctggtggaaaacacccctcCCCGCCCTgattaattaaaaa
aagaatgataaaaaactaGTAAAAAAATGTCGAATCCTCTAACAAAGTAA
AGACATCATTTCGACCTTAAACCACAAAAATCAACCTGGCTAAACCTCAT
ATATCCAAGTAGTTTCTTACAATAGATTTATAAATAGTAATGTTCTTTAG
TTTCATGTTAAATATTGAAGCCCATATATTGCAATTTAGCCTTAATTTGC
TTCACGTTTTTTTCTCTTAGTTTCACTTCAGGATACGATGCACGATTTCT
ATAAATATAGTCGTATATTTTAAAGATTGACTTCATACAGATTTGATTTA
ATTCAGCCAATACCATTTCTGTGCATGTATAAATACATGCCGTCTCGTCT
AGAGACCAGCACCCTTCTGGTAGTTTCATCGACTTAGAAGCAAGAAAAAT
TTCACTTCTTTTCTTCTTATAGGCTGTGTAAGGCtgcctttttctttttc
ctcctACTTTACCGgaatttttctttctattttcgTTTTTCCCATACGGG
TTTTCACAACTTTTGCAATTGCACATATCACAGCCAAGACGATTCTTGAA
ACAAGGACATTTCGTATTTCGACCATCAGTGTCCCGACAAGAGGTCTGAC
ATCTACATCCTTTAAGCCGTTGTTTGACTGCTTTGTTGTTAGAGCACTTC
CTACATCGACATTTTGCCGAGCAGTTACGGTTGGCTTTAATGCAAGGGCA
ACTTTTGACACCATCTTTACGAAAACAACCGTTCATGCAATGACAAATTG
ctaaa Run BLAST on NCBI protein sequence of TCONS_00054153-protein >TCONS_00054153-protein ID=TCONS_00054153-protein|Name=TCONS_00054153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
LAICHCMNGCFRKDGVKSCPCIKANRNCSAKCRCRKCSNNKAVKQRLKGC
RCQTSCRDTDGRNTKCPCFKNRLGCDMCNCKSCENPYGKNENRKKNSGKV
GGKRKRQPYTAYKKKRSEIFLASKSMKLPEGCWSLDETACIYTCTEMVLA
ELNQICMKSIFKIYDYIYRNRASYPEVKLREKNVKQIKAKLQYMGFNI Run BLAST on NCBI transcript from alignment at scaffold_241:52737..55391 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054153 ID=TCONS_00054153|Name=TCONS_00054153|organism=Clytia hemisphaerica|type=transcript|length=2655bp|location=Sequence derived from alignment at scaffold_241:52737..55391 (Clytia hemisphaerica)
tttagCAATTTGTCATTGCATGAACGGTTGTTTTCGTAAAGATGGTGTCA
AAAGTTGCCCTTGCATTAAAGCCAACCGTAACTGCTCGGCAAAATGTCGA
TGTAGGAAGTGCTCTAACAACAAAGCAGTCAAACAACGGCTTAAAGGATG
TAGATGTCAGACCTCTTGTCGGGACACTGATGGTCGAAATACGAAATGTC
CTTGTTTCAAGAATCGTCTTGGCTGTGATATGTGCAATTGCAAAAGTTGT
GAAAACCCGTATGGGAAAAAcgaaaatagaaagaaaaattcCGGTAAAGT
aggaggaaaaagaaaaaggcaGCCTTACACAGCCTATAAGAAGAAAAGAA
GTGAAATTTTTCTTGCTTCTAAGTCGATGAAACTACCAGAAGGGTGCTGG
TCTCTAGACGAGACGGCATGTATTTATACATGCACAGAAATGGTATTGGC
TGAATTAAATCAAATCTGTATGAAGTCAATCTTTAAAATATACGACTATA
TTTATAGAAATCGTGCATCGTATCCTGAAGTGAAACTAAGAGAAAAAAAC
GTGAAGCAAATTAAGGCTAAATTGCAATATATGGGCTTCAATATTTAACA
TGAAACTAAAGAACATTACTATTTATAAATCTATTGTAAGAAACTACTTG
GATATATGAGGTTTAGCCAGGTTGATTTTTGTGGTTTAAGGTCGAAATGA
TGTCTTTACTTTGTTAGAGGATTCGACATTTTTTTACtagttttttatca
ttctttttttaattaatcAGGGCGGGgaggggtgttttccaccaggtaTG
AATAACTTTAGATCCAGAAGTTCTATATTAATGAAACTTCACAGAAATCT
TCTTTACTATGAAAGGAACCCACGATAAAAATCTTCATAACGGCATCACA
AACTTTTTGCCTACCACCGACCAGCTAGAATATGCGTTTTACTAAAAACA
CAAACAAATCTGAACAAAATGAAGATTtctaaatttgttttgattttctg
aagGTATGAAGCTTTTTTTTAGCATAGTTTTTCTTGTGTTATATTTTATG
TCAGAAAGTTTTGCGATTTTTGTACGCTGAAATTTGTCAAATGAAATGGT
CACGAACAGTGCAGGACTTTCATAGCATTTCCCCCAATCAAGGGACAGTT
GTTGAATTGATTTTTGGCACAGATAtacaatttctcaattttttagatGT
CTGTGTTGTTTACTGTGAAAATCTTATACGCAGTGGGGTTGGTACAAAAC
TTTTGGAGGACCATTAAAAAAGTTGTCCTGAGTCAATTTAATAATCCTTA
GGTCAATCGTCGCTAAATTTTTTCTAGTTTACGACAGTATAAGACTCGGA
GTGTCCTTCTTGTTAGTAAGTGCCCGATATAAATTTAAAACAAACTTTTC
AATCGAGGGACGCTAAACCTCAACCGTCCTTCAATTGAGAGACGCGTTGT
TTTTTAGGGGAAATCACTCAAAGGAAGGACGTGCGTATGAAAGTTCCTCA
TTgacgaaaaattattttcaactaCTTTGATGTCAGAAATTTTCGCGTCT
AGAAAATTTTGCGACTCGGGCtattcgcgaaatttcgcgTGTTCTcaagg
aatttaatttcgcgaatcagcaagatttatttatttcacTGGAATTGATT
ATTGCGAAAATGGATTTTCCAGACAAAAACACTAGTAAAGTAGGTTTAAT
AGACTGTTTTTATGTtctaaaagcaaaaaagatCAAGATAATCTGAAAAC
TGTATTTtttggaattaattttcgcgaatcagctaaaacaatttttttcg
cgGAATTTTAATTTCTCGAATTCAGGGGccattcgcgaaaatcgcgaaat
tttctggacgCGAAAATTTCTGACATCAAAGTATTCCTCCGCAAATCAAC
tccaaaaaaattagattaaaaagttttacaatttttcatcaattttatcA
GTTTTGACTCATTCTTGCGAAAATTTATTCCATTGATTAAAACCACCAAT
TTTCGAACGGCCCGACTAGTAAAAATTTCTGACATTTAGGTTAAAAATTT
AtgatcatttttattttttgtcgaTCTTGTGTTAACCGAGctgtatattt
ttattattgtttgtCCATTTGATTTGCTCGTCTTGTTTTCATCGAAAGGA
AGTGGAGGGGTCCCATTATAAAAGGAATAAATAATAAGGTATAAAAACCT
CCCCTTGCAGTGCAGCTCTACGACAaccctacccttacagtgcatttttt
tgaTCTTGAAAACATACCCGTgtttaagggccgcacgtactgTAGGTCAT
TTACTTTGAGTGCCCTTTCCCCCTGGTGCTAGCAAACATTTGGGTTTCCC
GTTTAAGTGGGACGGTTGCCTTTAAAACATACCTTCTTCTTTTCCAAAAG
TTGTCCTTGTTATACAAAGTTATGTTTATTAGGTATTAGGCTAGAAGCTC
AGTAGAACAGATGGTAGGAATGTTTGTTGCTGTGAAATATTGATATCTTC
AATTCTTGGAAGAGTGATGCTatgtaaataatgtttttggatTATGTAAT
ATCtccaatgttttctttatttcacAAATCTGATACTCAATTTCCGATTA
ATAGTCTTCAAAATATGTTTCAAGAGATTTCAAAAGAtgtattattttat
taaaa Coding sequence (CDS) from alignment at scaffold_241:52737..55391 >TCONS_00054153 ID=TCONS_00054153|Name=TCONS_00054153|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_241:52737..55391 (Clytia hemisphaerica)
ttagCAATTTGTCATTGCATGAACGGTTGTTTTCGTAAAGATGGTGTCAA
AAGTTGCCCTTGCATTAAAGCCAACCGTAACTGCTCGGCAAAATGTCGAT
GTAGGAAGTGCTCTAACAACAAAGCAGTCAAACAACGGCTTAAAGGATGT
AGATGTCAGACCTCTTGTCGGGACACTGATGGTCGAAATACGAAATGTCC
TTGTTTCAAGAATCGTCTTGGCTGTGATATGTGCAATTGCAAAAGTTGTG
AAAACCCGTATGGGAAAAAcgaaaatagaaagaaaaattcCGGTAAAGTa
ggaggaaaaagaaaaaggcaGCCTTACACAGCCTATAAGAAGAAAAGAAG
TGAAATTTTTCTTGCTTCTAAGTCGATGAAACTACCAGAAGGGTGCTGGT
CTCTAGACGAGACGGCATGTATTTATACATGCACAGAAATGGTATTGGCT
GAATTAAATCAAATCTGTATGAAGTCAATCTTTAAAATATACGACTATAT
TTATAGAAATCGTGCATCGTATCCTGAAGTGAAACTAAGAGAAAAAAACG
TGAAGCAAATTAAGGCTAAATTGCAATATATGGGCTTCAATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054153-exon-scaffold_241-1491911889:52737..55391 | TCONS_00054153-exon-scaffold_241-1491911889:52737..55391 | Clytia hemisphaerica | exon |
| TCONS_00054153-exon-scaffold_241-1510915933:52737..55391 | TCONS_00054153-exon-scaffold_241-1510915933:52737..55391 | Clytia hemisphaerica | exon |
| TCONS_00054153-exon-scaffold_241-1575043694:52737..55391 | TCONS_00054153-exon-scaffold_241-1575043694:52737..55391 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_241 | supercontig | scaffold_241:52737..55391 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR033467 | Tesmin/TSO1-like_CXC |
Blast
The following BLAST results are available for this feature:
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