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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054120 ID=TCONS_00054120|Name=TCONS_00054120|organism=Clytia hemisphaerica|type=transcript|length=726bp
CTACAATTTACCGCGACTGATGCAGACCAAACTTCAACGGATGGTCGTGT
CCGCTATTTCTTCAAATCCGGAAACGATTCCGGCCATTTCCATCTCAATG
AAGACAATGGTACCCTGACCATCATAAAGGCTTTAGACTACGAAAAGGAA
ACACAATATATTCTTCATATTATTGCTATGGATTCACCGACTGAAGGCGA
ACCATTCCAGGACGAAATGCAAATTATCATCAATGTACAAGATGTTGATG
ACACTTGCCCCAAACTCACTCCAAATATCACTTCTGAAATGATGAcaatt
tatgaaaatgaaacTTTCATCTTAAGTTATACGATTTATGATCCAGACAC
AGCCCAAGCTGATCTCCTTATCATTGAAAATACAGATGTTACAAACCATT
CAGCTATTACAGTTAATTATGGTTTAAACAATGTAACAGGTGACTTCAGC
ATCGATCATTTGGACAAAGATGAAGAGCTTTTCCAACTAGCTTTCAACCT
TTCCGATGGAGTGTGTTCTCATCAAACTTTCAAGATTCTTTTGAGAGTGC
TCAGTGTTAATGAGTTCCCAACTATTCTGTCATCAAATACCACCATCAAT
TTGACTATATGTGAAGATCTTCAAATTCCTTTTACCAATGAGACACTTCA
AATGAACGCCACAGATGCAGATGGTGGATCAGACGGTCGTGTCCGCTATC
TCATCAAATCTGGAAACGATGATTCT Run BLAST on NCBI transcript from alignment at scaffold_24:186440..188649- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054120 ID=TCONS_00054120|Name=TCONS_00054120|organism=Clytia hemisphaerica|type=transcript|length=2210bp|location=Sequence derived from alignment at scaffold_24:186440..188649- (Clytia hemisphaerica)
CTACAATTTACCGCGACTGATGCAGACCAAACTTCAACGGATGGTCGTGT
CCGCTATTTCTTCAAATCCGGAAACGATTCCGGCCATTTCCATCTCAATG
AAGACAATGGTACCCTGACCATCATAAAGGCTTTAGACTACGAAAAGGAA
ACACAATATATTCTTCATATTATTGCTATGGATTCACCGACTGAAGGCGA
ACCATTCCAGGACGAAATGCAAATTATCATCAATGTACAAGATGTTGATG
ACACTTGCCCCAAACTCACTCCAAATATCACTTCTGAAATGATGACAATT
TATGAAAATGAAACTTTCATCTTAAGTTATACGATTTATGATCCAGACAC
AGCCCAAGCTGATCTCCTTATCATTGAAAATACAGATGTTACAAACCATT
CAGCTATTACAGTTAATTATGGTTTAAACAATGTAACAGGTATGTCCATT
GTAGAATTTAATCGTCAGCCGTGCAAAATTACTCGAATCTGATTGGTTTA
GAGGAGTGCGATTAATCGTTAATTGCACTATTACCACTTTTTGCACTCTT
CGGCGGGGGACACTTTTGTCCCCTTATTCTTTTCTCTCTATTCTTGATTA
TTTAATGACGATAACCTCGGAATCGTTTGTTCTGTCGTGCAATTAACGAT
TAATCACTCGTTACTAGTACAAATCACCAAGGCAATAATGTAAAATCTCT
GTAAAGTCTCATCGCACGGAATTAGATTTTCCTTGTTCTTGATGTCCGAA
ATATTTCAAGAAAAGAGAAACGCGTAGTATACCAAAAAGCACAACACCAA
ATCGGTGTGATGTTCTCCACATTCACCATAATAAATGCATTTTGTCATGA
GTTTGTCTGTAAACAGACCCATTATCTACGGCTAATTTTAAAATTCATTG
CCGTAGAGGGTCTGTTGTCATTGTCCTTCTCATTTGAGATTTTTCAAACC
GGCCGCTGCGATGGAGCTTTGGTGAGAGGGGAAACGATGAGAAAAGTAAT
GCTATTTATAAATCATACTTCGTCGCAGAGATCTCCGTACGGGAATTTTT
TATCAAACAGACAATACGCACACTACGAAGCGATAAACGTGAGATACACT
CTGGTACAGAGTAGTGATGAGTAGACTATTGCAATTAAAAGAAACCGTAC
CAAAATGGTAGAGAATCTTGTTACAAAGGTTGTAATTTCATCCAACAGGA
TCATAGAAAGGGAGTCTCTAATGAAACATAATTGTTTTAATTTCTCTGTT
CTCATCTTATTCACAGGTGACTTCAGCATCGATCATTTGGACAAAGATGA
AGAGCTTTTCCAACTAGCTTTCAACCTTTCCGATGGAGTGTGTTCTCATC
AAACTTTCAAGATTCTTTTGAGAGTGCTCAGTGTTAATGAGTTCCCAACT
ATTCTGTCATCAAATACCACCATCAATTTGACTATATGTGAAGATCTTCA
AATTCCTTTTACCAATGAGACAGTAAGTCTATACTGTGTTTCTTGGCGTT
TTTTATGTTTATTCACAAAATAGTTTTTGTTCAGTCTGCATTTTACAGAC
CTGTACAAAACTACAGATGGTAAACTTTAATCGGATTAATATTCGCGAAC
CAAAATAATCGCGAAATTTTTTTGGATTATTTTTGCGAATCAGCCTTTTG
AAAAATTACGCGAGTAAGTATTTGATTTCGCGAATCAGCCAAGCCTTTGC
TGAAAGTGATAAAAAATATCACATANGCCTTTTGAAAAATTACGCGAGTA
AGTATTTGATTTCGCGAATCAGCCAAGCCTTTGTTGAAAGTGATCAAAAA
TATCACATTTACAGTAAATTTTATGCTAACAATTTGATTTTGAAAGCTTC
GCATGGATTTACTTTCGCGAGTCAAGATCTCACGTGATTTCGCGAGTTAT
ATTTTCGCGAAAACGCGAAATTAAATCCGGCAAAACTTTATGCGCGTAAT
TATAATTTGCAAGAATCCGTTTAAAGATACAACCAGCCTAGTTTATAGCA
ATTCTTAGCCACGTGTTTCGTTTTTTTCGAGGGGGGGGGACATAAAATTG
GAGGTGCATCACTGTAATTGTAATGCCAAACTAATAATCTTTAATCCAGA
ACTTAAAAATTAACCTGATATTCCAATAGCTTCAAATGAACGCCACAGAT
GCAGATGGTGGATCAGACGGTCGTGTCCGCTATCTCATCAAATCTGGAAA
CGATGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054120-exon-scaffold_24-1575043694:188211..188649 | TCONS_00054120-exon-scaffold_24-1575043694:188211..188649 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1575043694:187178..187383 | TCONS_00054120-exon-scaffold_24-1575043694:187178..187383 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1575043694:186440..186520 | TCONS_00054120-exon-scaffold_24-1575043694:186440..186520 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1510915933:188211..188649 | TCONS_00054120-exon-scaffold_24-1510915933:188211..188649 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1510915933:187178..187383 | TCONS_00054120-exon-scaffold_24-1510915933:187178..187383 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1510915933:186440..186520 | TCONS_00054120-exon-scaffold_24-1510915933:186440..186520 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1491911889:188211..188649 | TCONS_00054120-exon-scaffold_24-1491911889:188211..188649 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1491911889:187178..187383 | TCONS_00054120-exon-scaffold_24-1491911889:187178..187383 | Clytia hemisphaerica | exon |
| TCONS_00054120-exon-scaffold_24-1491911889:186440..186520 | TCONS_00054120-exon-scaffold_24-1491911889:186440..186520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:186440..188649 - |
Blast
The following BLAST results are available for this feature:
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