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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054105 ID=TCONS_00054105|Name=TCONS_00054105|organism=Clytia hemisphaerica|type=transcript|length=1585bp GTTTGCAGTATAGATTTTCACATGTCTAAAAAAGTTCAAGCCTAGAAAGA TTATTTGTATGTTTGGTGTGATTTCCTGTTCTTGACTCGCTAAAACTTTT ACACCGTTCTCAGTCTTTTAGCATTATCTAATTTTTTTAGTGAAATCGGT GAATGTGAAAAAATGGTATGTAGCAAGAAATTGGAGAAATATGGCTAACC AAATGAAGAAAAGTTCCATTGTTTTATGGGTTTTAGTGATATCCCTCGAT TTCGCATCAAACCTTGAAGTAACTGGTTTAAATTTGGTCAACAAAACGTT GATAGGAAACGTCACGCTGCAACaatcaaatttccaaaatggtcAACTTA ACATTTCTTCAACAAATTCAACACGTGTTGCCAGACCTCTGATTACAAAC CAATCAAAAACGTCCGTCAAGGAAAACAGCCAATCAAAAGCGAGCGTCGT TGATAAGAAGCAATCAAAAGTGACCATCAAGGAAGACAAAAAAGACATTG GccaaaacatacaaaaagaCTTATCAACAAAATCAGAGATTTATAAAATG CATTCAAATGGATTAATGCTTCTACACCCTCAACGTTCATCGATAgcaaa aagttccaaaaaatcaaaacttgctTCAAGTTCGTCAGATGATAGTGCTG TTAATTATCATATATGGAAGAAACCGGATCACGACAAAACGACAAATCAG TCGTCGGCTATCGTTGAAAACGAGAAATTTTTAGAGACTAAATTAGGAAA TCTTCCACAAATACAAGAAGGGAAACGAGAAACGACGACTTTTAGCGAAA ATTGTCTTGATACGGATCCAATCGGAGGCAAACCTTGTAATGTAGACGAG GAAAGTAACGAAAAACAGGATTATTTACGCCGAAAACGAGAATCGATTTT ACAACGAAGAACGAGTACCGAGGATCGAGAATCGACTTTAAACCGAGAAA CGAGAAACGAAGATGATCCTTTATTCGACGATGATCAACCTGAAGAAATT CTTCgccgagaaaaagaaaaacgaagactaataaaattaaaatcaagaTA CGGGAGCGCTCTATCTAGAGGTATTCCCGATATCCCAGCAATAAAACCGA TTCCCGATATACAATCCCGATTCGAGAAAATCGAGCCTTTAGAAACGATT CCACGGTTCGGACTTTTTGGGCCAGAGGCGTACGACAACTGGCCAAGATT TGGTGTACCGGATTTAAGTTTGATGCATTATCCACGTTTTCCAGCACCTA AAATGGACGAATTTGAACAAATACCAGGGATCCCACATATCCGGCCTTTA AGTCGCGGAGATGAAGTGACCGGTAGTAAAGTATGTGTTTTTGAAGAGGC TGTCTTTCACCATAAAAACCCATGTAAAATCTAAGGATTTTAAGTGTGAA ATATGTATAAGACTCCTAGGAAGTTGTTTAATCTGCTTTTTTCTCATTGT TTAATTTTAGCTCTAAACAGTTTCTTAATTTTATTGTGTATTCAGTAATC CTGCTTTACCACACTGCTTTTTTATACATATGCTTATTTTTAgaattgca ttttttttgtcatacAATAAAATACACACAGAAAA Run BLAST on NCBI protein sequence of TCONS_00054105-protein >TCONS_00054105-protein ID=TCONS_00054105-protein|Name=TCONS_00054105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MANQMKKSSIVLWVLVISLDFASNLEVTGLNLVNKTLIGNVTLQQSNFQN GQLNISSTNSTRVARPLITNQSKTSVKENSQSKASVVDKKQSKVTIKEDK KDIGQNIQKDLSTKSEIYKMHSNGLMLLHPQRSSIAKSSKKSKLASSSSD DSAVNYHIWKKPDHDKTTNQSSAIVENEKFLETKLGNLPQIQEGKRETTT FSENCLDTDPIGGKPCNVDEESNEKQDYLRRKRESILQRRTSTEDRESTL NRETRNEDDPLFDDDQPEEILRREKEKRRLIKLKSRYGSALSRGIPDIPA IKPIPDIQSRFEKIEPLETIPRFGLFGPEAYDNWPRFGVPDLSLMHYPRF PAPKMDEFEQIPGIPHIRPLSRGDEVTGSKVCVFEEAVFHHKNPCKI Run BLAST on NCBI transcript from alignment at scaffold_24:157806..162002- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054105 ID=TCONS_00054105|Name=TCONS_00054105|organism=Clytia hemisphaerica|type=transcript|length=4197bp|location=Sequence derived from alignment at scaffold_24:157806..162002- (Clytia hemisphaerica) GTTTGCAGTATAGATTTTCACATGTCTAAAAAAGTTCAAGCCTAGAAAGA
TTATTTGTATGTTTGGTGTGATTTCCTGTTCTTGACTCGCTAAAACTTTT
ACACCGTTCTCAGTCTTTTAGCATTATCTAATTTTTTTAGTGAAATCGGT
GAATGTGAAAAAATGGTATGTAGCAAGAAATTGGAGAAATATGGCTAACC
AAATGAAGAAAAGTTCCATTGTTTTATGGGTTTTAGTGATATCCCTCGAT
TTCGGTAAGACTATGTTATCGTTCGCACTTTCAATGTGAAGCCGTCACCC
GGCAATCTGAAGCGTCAGACATCTATGAATACTAAAAGGGCTGGTTTTCG
AGAATTTTAGCACACCATCGAATTTTTGAAACTTTTTCAAAACTTTTTGG
AAAATTGATCTCTCGGGAACAAATTAGTTATCACGGGACATTTATTTCTC
AAAAAACATGCAACATGTTTTTTTGTAAAATTACGAAAATCTTTGAAAGA
AGATTCAGAAAATTACAAATATCACTAATTACTTAATAAACATTTCTAAA
ACATTTCTCAAATATTTCTCAATTTTCTTCTACATACATATCACGTTTTT
GGAGATTCTTTGGCATACAACCACGTGATGTCCTAAGATTTTAGCACTCG
CCCCCTCCCCTGATATGCAATACACGCATTTTTATGAGAATAGTGTACTT
TGGATGAGGGTCAAGTATTCTTAAGAAAGTGCCAAAATTGAGGGTGAAAT
ATTCTTAACGTATTCTTACTTTTTTAGACTTGACTTTTTTACAAACATGA
GAAATAATCAATTTGAGAGTTTTGGACTTTTGAGTGAACATTTGGGTTAA
AATTAGATATTTTCCTCAAAGCTTCAATTCATCTCTAACAAAAACAAAGG
AAACAGTTTTTTCTGTTAACCAAATACAAAATGACTGTAGTCTTATCAAA
TTCTGTGAAATTCACCCTAGGGGGGTGTTCTTACGGTATTCTTATGATTT
GGCCAATTTTCACCCTGATATTCTTATAGAAGATATTCTTTAAAAAAAAA
GCGTGTAAATGTATGCATTTTGTTGCTTTATAATTGTTTTTGCTAACTTC
TTTCATAGCATCAAACCTTGAAGTAACTGGTTTAAATTTGGTCAACAAAA
CGTTGATAGGAAACGTCACGCTGCAACAATCAAATTTCCAAAATGGTCAA
CTTAACATTTCTTCAACAAATTCAACACGTGTTGCCAGACCTCTGATTAC
AAACCAATCAAAAACGTCCGTCAAGGAAAACAGCCAATCAAAAGCGAGCG
TCGTTGATAAGAAGCAATCAAAAGTGACCATCAAGGAAGACAAAAAAGAC
ATTGGCCAAAACATACAAAAAGACTTATCAACAAAATCAGAGATTTATAA
AATGCATTCAAATGGATTAATGCTTCTACACCCTCAACGTTCATCGATAG
CAAAAAGTTCCAAAAAATCAAAACTTGCTTCAAGTTCGTCAGATGATAGT
GCTGTTAATTATCATATATGGAAGAAACCGGATCACGACAAAACGACAAA
TCAGTCGTCGGCTATCGTTGAAAACGAGAAATTTTTAGAGACTAAATTAG
GAAATCTTCCACAAATACAAGAAGGGAAACGAGAAACGACGACTTTTAGC
GAAAATTGTCTTGATACGGATCCAATCGGAGGCAAACCTTGTAATGTAGA
CGAGGAAAGTAACGAAAAACAGGATTATTTACGCCGAAAACGAGAATCGA
TTTTACAACGAAGAACGAGTACCGAGGATCGAGAATCGACTTTAAACCGA
GAAACGAGAAACGAAGATGATCCTTTATTCGACGATGATCAACCTGAAGA
AATTCTTCGCCGAGAAAAAGAAAAACGAAGACTAATAAAATTAAAATCAA
GATACGGGAGCGCTCTATCTAGAGGTATTCCCGATATCCCAGCAATAAAA
CCGATTCCCGATATACAATCCCGATTCGAGAAAATCGAGCCTTTAGAAAC
GATTCCACGGTTCGGACTTTTTGGGCCAGAGGCGTACGACAACTGGCCAA
GATTTGGTGTACCGGATTTAAGTTTGATGCATTATCCACGTTTTCCAGCA
CCTAAAATGGACGAATTTGAACAAATACCAGGGATCCCACATATCCGGCC
TTTAAGTCGCGGAGATGAAGTGACCGGTGACCGGAGAGGTTACCCCGCGA
AAAACGATGATTTTTATGACCAAGAACTCGATGAGGACATTGAGCATAAT
TCACCAATAACTTCACCAACAGCTATTCCCTCACTAACGAATATACCAGA
CATACCTGACATTCAAGATATACCGACCATTAGTCCAGCCCGCGCGGCCG
CTCGCAAATCGTCAAACGGACAACCAGCGGTTGATACAATTCATACGAAA
GATGGGGATGAGACGAGGGTGTCTACTTAAGAATGAGTGAGAAAGGAAAG
TAGTTTCCGTTGGTTGAGAGCGTTTCTGAGCTTTTGTTTACGGTATCTCA
GCTTACATTATCGAACGTGTTATAGATGTTTGATGGACACTGTTTTGACG
TATTGTGTAATAAAAATTACAACTTACTATATTCCTTGGTCCTCATTTAG
GTCAAGAGTCGTTACAGTGAGTCTGGAAGAATGCTTTTGTATAAATCAAG
TGTATCATCTTTCTGGAGTGTAGAATACATAAAATGAGACGAAATTTATT
CATTTTTCAAGAGGTACATCACCTGACCCCGAGAATGTAGTAAACCCCGA
GAATGTAGGTTTCTCATTTTTTAGCATTGTAGCCCTAACGATAGTTCAAC
TTCTTAAAAATTTGTTTCAGAGCATACTGCTACATCTTACTGATTATTTC
TGGACAGAAAATTTTAACTTGAATTAATTTTTTCCAACGAAAATCTGAAT
GGAAGTTGATTGGATATTACCCGAACTGAGACATTTTTTAAATAAATCCT
CTCTAAATCGAAATCCATTGGAATTAAGTTATGACGATAGGGTATTTTCT
TAGTCCTAATGAACTAAGGAAATGGGGAAAATAGTCCATTTCAATATTTA
CTGTTCTGAGTTAGATATTTTGACGAAAATGTTTGACCTATATTTTGGGG
TTAGTTGACCTACAATTTGGGGGCCTTTATAACCCGACATAAAAAGTCTG
TCAAATTATATAAAACTTGTTTGTTGTACTTTTATAACATGAAAGTACTA
CCTGAGAGATGATTAATGTTGAAATTTTGAGCTTTTACGACGTGTCCCAG
ACCCGTTGGGGCCCCAGCCCAATCAAAAAATTTGCCTAAGTTTGGAGCAA
TAGAATTTCTATTCCAATTTGGACTTAAGTAGAAATTTTTGGACCAGATG
TGGGAAAAAGTTCCACCGGGGCTGTGAGGCAGTTGTCTCTTCCTTTCGTG
CTTCCTTTTACTTTTCCTCATTTGTAGTACGATGAAATTAATATATTTGG
TTAATTTTTTGTCAGCGTATATTTATAAAGTATGAATTTCACTTAGAGAA
CAATAATTTCCGATGAATACCGAAATTCCATTCTCAACAACCGAATCTTT
TCACCTACATTCTGGGGGTTAAAAAGTGAAAAAATCCAATTTTCAGAATA
ACAAAATAACAATATTGTTTTCGCATAAAACATTTCTAAAATTTACTGTT
AGAATTAATCCAATTGAAAAAATATCAACATTTTACTATTACTAGATTTA
AAGCCATAAAACCAAATCTACATTCTGGGGGCTATATAGGAGTCAACTTC
AAGGACCAAAAAAATTGGTCTATCTATCAAAAGTAATGAAACTAACCCCT
GGGAAAGGATTTTGGGAGTTCGAAATTTCGTTGAAAATATTCAATATCGT
TTAAAATGCAAATCTACATCTTTCAGGTCTGATTCAAATTTCACCTACAT
TCTCGGGGTCAGGTGCTGTATTTGCTTTCCAAAGGTAGTAAAGTATGTGT
TTTTGAAGAGGCTGTCTTTCACCATAAAAACCCATGTAAAATCTAAGGAT
TTTAAGTGTGAAATATGTATAAGACTCCTAGGAAGTTGTTTAATCTGCTT
TTTTCTCATTGTTTAATTTTAGCTCTAAACAGTTTCTTAATTTTATTGTG
TATTCAGTAATCCTGCTTTACCACACTGCTTTTTTATACATATGCTTATT
TTTAGAATTGCATTTTTTTTGTCATACAATAAAATACACACAGAAAA Coding sequence (CDS) from alignment at scaffold_24:157806..162002- >TCONS_00054105 ID=TCONS_00054105|Name=TCONS_00054105|organism=Clytia hemisphaerica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_24:157806..162002- (Clytia hemisphaerica) GTAGTAAAGTATGTGTTTTTGAAGAGGCTGTCTTTCACCATAAAAACCCA TGTAAAATCTAACATCAAACCTTGAAGTAACTGGTTTAAATTTGGTCAAC AAAACGTTGATAGGAAACGTCACGCTGCAACAATCAAATTTCCAAAATGG TCAACTTAACATTTCTTCAACAAATTCAACACGTGTTGCCAGACCTCTGA TTACAAACCAATCAAAAACGTCCGTCAAGGAAAACAGCCAATCAAAAGCG AGCGTCGTTGATAAGAAGCAATCAAAAGTGACCATCAAGGAAGACAAAAA AGACATTGGCCAAAACATACAAAAAGACTTATCAACAAAATCAGAGATTT ATAAAATGCATTCAAATGGATTAATGCTTCTACACCCTCAACGTTCATCG ATAGCAAAAAGTTCCAAAAAATCAAAACTTGCTTCAAGTTCGTCAGATGA TAGTGCTGTTAATTATCATATATGGAAGAAACCGGATCACGACAAAACGA CAAATCAGTCGTCGGCTATCGTTGAAAACGAGAAATTTTTAGAGACTAAA TTAGGAAATCTTCCACAAATACAAGAAGGGAAACGAGAAACGACGACTTT TAGCGAAAATTGTCTTGATACGGATCCAATCGGAGGCAAACCTTGTAATG TAGACGAGGAAAGTAACGAAAAACAGGATTATTTACGCCGAAAACGAGAA TCGATTTTACAACGAAGAACGAGTACCGAGGATCGAGAATCGACTTTAAA CCGAGAAACGAGAAACGAAGATGATCCTTTATTCGACGATGATCAACCTG AAGAAATTCTTCGCCGAGAAAAAGAAAAACGAAGACTAATAAAATTAAAA TCAAGATACGGGAGCGCTCTATCTAGAGGTATTCCCGATATCCCAGCAAT AAAACCGATTCCCGATATACAATCCCGATTCGAGAAAATCGAGCCTTTAG AAACGATTCCACGGTTCGGACTTTTTGGGCCAGAGGCGTACGACAACTGG CCAAGATTTGGTGTACCGGATTTAAGTTTGATGCATTATCCACGTTTTCC AGCACCTAAAATGGACGAATTTGAACAAATACCAGGGATCCCACATATCC GGCCTTTAAGTCGCGGAGATGAAGTGACCGATGGCTAACCAAATGAAGAA AAGTTCCATTGTTTTATGGGTTTTAGTGATATCCCTCGATTTCGGTAGTA AAGTATGTGTTTTTGAAGAGGCTGTCTTTCACCATAAAAACCCATGTAAA ATCTAACATCAAACCTTGAAGTAACTGGTTTAAATTTGGTCAACAAAACG TTGATAGGAAACGTCACGCTGCAACAATCAAATTTCCAAAATGGTCAACT TAACATTTCTTCAACAAATTCAACACGTGTTGCCAGACCTCTGATTACAA ACCAATCAAAAACGTCCGTCAAGGAAAACAGCCAATCAAAAGCGAGCGTC GTTGATAAGAAGCAATCAAAAGTGACCATCAAGGAAGACAAAAAAGACAT TGGCCAAAACATACAAAAAGACTTATCAACAAAATCAGAGATTTATAAAA TGCATTCAAATGGATTAATGCTTCTACACCCTCAACGTTCATCGATAGCA AAAAGTTCCAAAAAATCAAAACTTGCTTCAAGTTCGTCAGATGATAGTGC TGTTAATTATCATATATGGAAGAAACCGGATCACGACAAAACGACAAATC AGTCGTCGGCTATCGTTGAAAACGAGAAATTTTTAGAGACTAAATTAGGA AATCTTCCACAAATACAAGAAGGGAAACGAGAAACGACGACTTTTAGCGA AAATTGTCTTGATACGGATCCAATCGGAGGCAAACCTTGTAATGTAGACG AGGAAAGTAACGAAAAACAGGATTATTTACGCCGAAAACGAGAATCGATT TTACAACGAAGAACGAGTACCGAGGATCGAGAATCGACTTTAAACCGAGA AACGAGAAACGAAGATGATCCTTTATTCGACGATGATCAACCTGAAGAAA TTCTTCGCCGAGAAAAAGAAAAACGAAGACTAATAAAATTAAAATCAAGA TACGGGAGCGCTCTATCTAGAGGTATTCCCGATATCCCAGCAATAAAACC GATTCCCGATATACAATCCCGATTCGAGAAAATCGAGCCTTTAGAAACGA TTCCACGGTTCGGACTTTTTGGGCCAGAGGCGTACGACAACTGGCCAAGA TTTGGTGTACCGGATTTAAGTTTGATGCATTATCCACGTTTTCCAGCACC TAAAATGGACGAATTTGAACAAATACCAGGGATCCCACATATCCGGCCTT TAAGTCGCGGAGATGAAGTGACCGATGGCTAACCAAATGAAGAAAAGTTC CATTGTTTTATGGGTTTTAGTGATATCCCTCGATTTCGGTAGTAAAGTAT GTGTTTTTGAAGAGGCTGTCTTTCACCATAAAAACCCATGTAAAATCTAA CATCAAACCTTGAAGTAACTGGTTTAAATTTGGTCAACAAAACGTTGATA GGAAACGTCACGCTGCAACAATCAAATTTCCAAAATGGTCAACTTAACAT TTCTTCAACAAATTCAACACGTGTTGCCAGACCTCTGATTACAAACCAAT CAAAAACGTCCGTCAAGGAAAACAGCCAATCAAAAGCGAGCGTCGTTGAT AAGAAGCAATCAAAAGTGACCATCAAGGAAGACAAAAAAGACATTGGCCA AAACATACAAAAAGACTTATCAACAAAATCAGAGATTTATAAAATGCATT CAAATGGATTAATGCTTCTACACCCTCAACGTTCATCGATAGCAAAAAGT TCCAAAAAATCAAAACTTGCTTCAAGTTCGTCAGATGATAGTGCTGTTAA TTATCATATATGGAAGAAACCGGATCACGACAAAACGACAAATCAGTCGT CGGCTATCGTTGAAAACGAGAAATTTTTAGAGACTAAATTAGGAAATCTT CCACAAATACAAGAAGGGAAACGAGAAACGACGACTTTTAGCGAAAATTG TCTTGATACGGATCCAATCGGAGGCAAACCTTGTAATGTAGACGAGGAAA GTAACGAAAAACAGGATTATTTACGCCGAAAACGAGAATCGATTTTACAA CGAAGAACGAGTACCGAGGATCGAGAATCGACTTTAAACCGAGAAACGAG AAACGAAGATGATCCTTTATTCGACGATGATCAACCTGAAGAAATTCTTC GCCGAGAAAAAGAAAAACGAAGACTAATAAAATTAAAATCAAGATACGGG AGCGCTCTATCTAGAGGTATTCCCGATATCCCAGCAATAAAACCGATTCC CGATATACAATCCCGATTCGAGAAAATCGAGCCTTTAGAAACGATTCCAC GGTTCGGACTTTTTGGGCCAGAGGCGTACGACAACTGGCCAAGATTTGGT GTACCGGATTTAAGTTTGATGCATTATCCACGTTTTCCAGCACCTAAAAT GGACGAATTTGAACAAATACCAGGGATCCCACATATCCGGCCTTTAAGTC GCGGAGATGAAGTGACCGATGGCTAACCAAATGAAGAAAAGTTCCATTGT TTTATGGGTTTTAGTGATATCCCTCGATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054105-exon-scaffold_24-1575043694:161749..162002 | TCONS_00054105-exon-scaffold_24-1575043694:161749..162002 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1575043694:159827..160894 | TCONS_00054105-exon-scaffold_24-1575043694:159827..160894 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1575043694:157806..158068 | TCONS_00054105-exon-scaffold_24-1575043694:157806..158068 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1510915933:161749..162002 | TCONS_00054105-exon-scaffold_24-1510915933:161749..162002 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1510915933:159827..160894 | TCONS_00054105-exon-scaffold_24-1510915933:159827..160894 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1510915933:157806..158068 | TCONS_00054105-exon-scaffold_24-1510915933:157806..158068 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1491911889:161749..162002 | TCONS_00054105-exon-scaffold_24-1491911889:161749..162002 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1491911889:159827..160894 | TCONS_00054105-exon-scaffold_24-1491911889:159827..160894 | Clytia hemisphaerica | exon |
TCONS_00054105-exon-scaffold_24-1491911889:157806..158068 | TCONS_00054105-exon-scaffold_24-1491911889:157806..158068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_24 | supercontig | scaffold_24:157806..162002 - |
Blast
The following BLAST results are available for this feature:
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