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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054102 ID=TCONS_00054102|Name=TCONS_00054102|organism=Clytia hemisphaerica|type=transcript|length=144bp
TCGCTTCCGATTTTCGGTATAAACGACAAAACTTTGCCATCTGTCATTTG
ATAAATCTTAATGGTTCGATTCGAACATGCTACGATGACTTGATCACCCA
AATAGTCAGTGTTACTTTTGTCTCCATAACCCAAACATTGAACT Run BLAST on NCBI transcript from alignment at scaffold_24:129869..131574- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054102 ID=TCONS_00054102|Name=TCONS_00054102|organism=Clytia hemisphaerica|type=transcript|length=1706bp|location=Sequence derived from alignment at scaffold_24:129869..131574- (Clytia hemisphaerica)
TCGCTTCCGATTTTCGGTATAAACGACAAAACTTTGCCATCTGTCATTTG
ATAAATCTTAATGGTTCGATTCGAACATGCTACGATGACTTGATCGTCCA
AACAGTCAGTGTTACTTTTGTCTCCATAACCCAAACATTGAACTCTTCCT
TGTGAGCCATGCATGTTACATAATTCTTTTAACGTACTTAAGCAATATTT
GCGAATCTGAATTTGCGAATTAAAAAATGAATTTTAATGAATAATGCCAA
TTTTTCTGTTGTTTTAACATGGCTTAGACCAGGGGTCTTATTTCTGATTA
GAAAACAAATTTCACCGGCAAAAGACGCGACTAAAATGTATATTTCTCCA
GACATCATATCATAACACTTGATAACCTAAAATTCGACAGAGCTTGTTAC
GCTTTCGTAATACAAATAAAAGGCTTTTCTCACACTAATTGCTAGGTTCC
AAGTGATTTTAAGAAAACGTGCAGAATCTAGTTTTGTTTGTTTTGTGCCA
TTGAACCAAATTGTAAAGAAGGACAGTCTAGCTGAACGAAGTATCATTTC
CATGTACAAACTTACACGAAAACCACCTAAGGAGCTGTAACCGAATCCAT
TGACTGCTACCACCAAGTATGATGCGCTGTAGCGGAGACACGAAAATGTC
GCACCGGCGATTTGATCCAGTTCAATGTGTGTTTTATTTTGCGTTTCAAT
TGTCAAAATTTTGTGTCGGAGGTTCAGGACCAAGACTTTGTCAATGAATG
CCAAATCCAAGATCTGCAAGATAACAAGANACTCTTCCTTGTGAGCCATG
CATGTTACATAATTCTTTTAACGTACTTAAGCAATATTTGCGAATCTGAA
TTTGCGAATTAAAAAATGAATTTTAATGAATAATGCCAATTTTTCTGTTG
TTTTAACATGGCTTAGACCAGGGGTCTTATTTCTGATTAGAAAACAAATT
TCACCGGCAAAAGACGCGACTAAAATGTATATTTCTCCAGACATCATATC
ATAACACTTGATAACCTAAAATTCGACAGAGCTTGTTACGCTTTCGTAAT
ACAAATAAAAGGCTTTTCTCACACTAATTGCTAGGTTCCAAGTGATTTTA
AGAAAACGTGCAGAATCTAGTTTTGTTTGTTTTGTGCCATTGAACCAAAT
TGTAAAGAAGGACAGTCTAGCTGAACGAAGTATCATTTCCATGTACAAAC
TTACACGAAAACCACCTAAGGAGCTGTAACCGAATCCATTGACTGCTACC
ACCAAGTATGATGCGCTGTAGCGGAGACACGAAAATGTCGCACCGGCGAT
TTGATCCAGTTCAATGTGTGTTTTATTTTGCGTTTCAATTGTCAAAATTT
TGTGTCGGAGGTTCAGGACCAAGACTTTGTCGATGAATGCCAAATCCAAG
ATCTGTAAGATAACAAGGAATATTGAGATTAGGAGCGATAAAACTTTGTT
ATGCAGTGACAATGTAAAAAGGTCGAGCTTTCAGGCTAAACCATCACAGT
AAAAAATTATTTTCTTTTAAGAAAACAAAACCCATTATTTTGAATCTAAA
AATGCCTCAAAGGTGAGAATAGTTTTAAAGGCTATTATCAACGGGGTATA
CATTGATGGCTTTAATAATGATATCCACNGATTCGAACATGCTACGATGA
CTTGATCACCCAAATAGTCAGTGTTACTTTTGTCTCCATAACCCAAACAT
TGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054102-exon-scaffold_24-1575043694:131499..131574 | TCONS_00054102-exon-scaffold_24-1575043694:131499..131574 | Clytia hemisphaerica | exon |
| TCONS_00054102-exon-scaffold_24-1575043694:129869..129936 | TCONS_00054102-exon-scaffold_24-1575043694:129869..129936 | Clytia hemisphaerica | exon |
| TCONS_00054102-exon-scaffold_24-1510915933:131499..131574 | TCONS_00054102-exon-scaffold_24-1510915933:131499..131574 | Clytia hemisphaerica | exon |
| TCONS_00054102-exon-scaffold_24-1510915933:129869..129936 | TCONS_00054102-exon-scaffold_24-1510915933:129869..129936 | Clytia hemisphaerica | exon |
| TCONS_00054102-exon-scaffold_24-1491911889:131499..131574 | TCONS_00054102-exon-scaffold_24-1491911889:131499..131574 | Clytia hemisphaerica | exon |
| TCONS_00054102-exon-scaffold_24-1491911889:129869..129936 | TCONS_00054102-exon-scaffold_24-1491911889:129869..129936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_24 | supercontig | scaffold_24:129869..131574 - |
Blast
The following BLAST results are available for this feature:
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