TCONS_00054096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054096
Unique NameTCONS_00054096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054096 ID=TCONS_00054096|Name=TCONS_00054096|organism=Clytia hemisphaerica|type=transcript|length=1439bp
aatttttaAACTGCAGCACATATTTGAATCCTAGAACACAATGAAGCAAA
CAAGTCTTCAACGTTCCAGGCAAGAGAAAGTTTGGACCTCATTTCGGACG
ATAGGTCGAATCTGTTGCTTTTGTTTTCATGTGTTGCATTTTTGGAAGTC
TGAAGaggAAAGAAAAGAGAAGAATTGGGATAAGAAGCTAAAAGATGGAT
TCTACTAAAGCCTTatcattttgtttatttgtgTTTATGGTCATCGCTCA
AAACCACGCTAAGAAATATGTCAAGAAATCGTTCACCATTGCCAATTACA
ATGAAGATTTTTGTGCAGACAAAATCGAAGGATGTCAAAATTTACGTAAC
CGATGTAATCTGAAACTTGTTCAACGGAAATGTAAATCCACTTGTGGTTT
GTGTGTACCCAGTCCGCCATTGCATTGTGGGTTGACAAAATATGGCTGTT
GCTGGGACAATCAGACACGTGCGAACTCTTCGAACAAAGATGGTTGTCCA
CCTTGCGCAGATAAACATTCGATGTGCAGATTCTTCAAGAGTGAATGTTC
CGCTCGTCCAGATGTTCGGTTAGTTTGCCCAATTACATGCGGAATACCAT
GCGATCGATGTCGAGACAGTGAACATCAAAAACTGGTTTGTCCCATGTAC
AAAGAAGTTGGTTTCTGTAAAATATCTCCTGATCTCATGCGACAGATCTG
TGCAAGGACGTGCAACTTTTGTCCAATCNCTCTCCTGACCTCATGCGACA
GATCTGTGCAAGGACGTGCAACTTTTGtccaatctgattggttgatgcTC
GTAGAGGAAGTAAAACGATTGGGTTATCCTTGAGCAAAACGCTTTTTGAT
TGGACGGTTCGACATGTTGACGAAAAAGCGAACATTGATTGGTTGGGATA
AAAACCGGAAACACTCTTCTCGATTCCTTATTAGATTGAAACACAATCGA
ATGCTAGGCGATCAATCGAAAGAAATTAATAATGATGTTCTTTAAGAAAC
TTTTGGAGACTTTACTGTATACCAAATATTGCAAATAGAAATTAATGTGA
CGTTGGCAgtcaataatttatgtaaacaTAACATTGACAATTACTTTTTC
ATCGGCGATGTATGAAAAAATatatgatttgatttttttaaatttgcatG
ATGCAGTAGTAGTATTTATGGTAGCTGGTTCAAAACGCCCTACTAACGTT
CATTAGACGTCCCCAACAtccattagatgaacgttgcaacaacgttgtgt
gtcgaATGCTTTTTCGTAGAacaaattataaaattattagCTAGGAGAAA
TGATAAGGTCCAATAGTATTTAATGATTCCATTACCATGACACggggaaa
atttattttgatatctTTGAGTGCTATTTCTTCTAGGTATTTTTTGTAAG
TTATTGATAATTTATGAAATATTATTGACTAAACTCGGT
Run BLAST on NCBI

transcript from alignment at scaffold_24:135983..142860+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054096 ID=TCONS_00054096|Name=TCONS_00054096|organism=Clytia hemisphaerica|type=transcript|length=6878bp|location=Sequence derived from alignment at scaffold_24:135983..142860+ (Clytia hemisphaerica)
aatttttaAACTGCAGCACATATTTGAATCCTAGAACACAATGAAGCAAA
CAAGTCTTCAACGTTCCAGGCAAGAGAAAGTTTGGACCTCATTTCGGACG
ATAGGTCGAATCTGTTGCTTTTGTTTTCATGTGTTGCATTTTTGGAAGTC
TGAAGGTAAATGTATTTCAATCTAGCTAACGAGAAAAAACCACATGGCCG
GTGCATTATGGGTGGGAAAAGTGGCCCTGCATCTGTCAACTGATCTTCAT
TGCTgaaaaaaagccaaataatGCGGTTAGAGTTCCTACACTGAGCAATG
AGTTGGCACATGGATCGGGTTACCTATACCATAAGAAGTGTGTCCAGTTT
GAGTCCGCTGTCTTACTTTTCTGGTCATCAACAGCAGGATTCGAATTTGG
AACATTTCTATGATCTGACATCATCAAGAAAGAACGTGGTTAGTTTATGT
TAAATCTTGACAATCTTTTACGAGAAATCTGTGAGAAATTAGCCTAACTA
GTGCGTAAAGGAATATGCTATCTGTGAGTTTTTCTTGCGTAATGTCTTTT
GATCATTTCTGATGCTTCTTGTCTAACCATACTGTCTAAGTTAATTGAAT
TCCTTCGTTATTATTTGCGAGGTTTACTCCTTCTCTATTTAATGAATGCG
TCTAAAGTAAGTTTAATCTCATTAAGTGTTGTTCTGATTGATTCGAAATG
CCTCTCGATTAGTtagaaaaagaaaggttttggTTGTTATATATTGGTGG
GTGGAAGGAAGTGTGTGTTTTATGTTTCATGTGTCACAATGTTTGAAACT
TGGCGGTTTTTGTTATTTAGAAATATTCTGCAAGAGCATGTATCTTTGGT
TTAATATATTGGTTTTTGCGATACTTTCCTAAGATGTTACCTAAAGCTAT
ATCCGACTTTAAAAACATCCTTTACTGACGTATGGTGGAATACGGATGCC
ATAACTTTTTCAGGCTTCAATTTTATCTTGAAATTAGTTTTTAGATTTAA
CGGTAACTGGTATCATAGTTTATTAAGGTCACGGTTCTAAAATGTAGAGT
GACCTTGACATTTTATTTTCCTGTTCTGTGAGTTTTTGTAACATCCACCA
TTGGTAGTTAAAGGCTTTGCTTCAAGTTTTGCTTGATGTTTGCAGACTTT
TGTTCTTGGCCTGAGCATTGTCTGAAGTATTTCAATGATTTTAATACCTC
GTCtagagttttatttttattctttttttttatcggATAGACGGTTGGTG
TTGTGGGAGATAAGTCTTAATTTTATTATTAATCCCATAAGGTATTGCAT
CAGGATAAGAGAGTAGATATCAGATACCTTAAGTTGATTAAGTTGAACTT
GATCTAATAAATCTGTGGATTAAGTTCTGTCAACCATGGGTTTaccaaag
aatttttcagcagCATTGCATaatacaatatttcattttctctACCGTTT
TCTTTTAAATGTTGCATCGATTTGAAATGGCTAGCTGTAGGATTTTCTAG
ATTGATCAATTTCTTTGTATGGTATGCGACTTTTTAATACTCTCCTCAGA
GCGCAGTGAAAGTCAATCTAAATTTTATATTAGAACATATCAATAACact
ttttgttaatatttcaGTTGATCAATTAATTTTGTCCCTTCGAATAAACA
CAGTTTGACAACAGTCTGGGTAAATGATACACCAcggtgttttttataag
agctaataaagtaaataaaaatataaggTTTTAGATactaaaaatctttt
aaagaaTACCTTAATAGATACGAAAACACCGCgcttaaaattttgaacat
gTGGTCAAGGATGTGACTTAAAAAGTGAATAAATTACAAGTCATTTTAAG
catgtaaaatcaaaataaacataGGTTCGTTCtatttgaaaattcatttt
cttatagaaaaaaaacgtTCTCCCGTTTTTTTATCTCACGGTTAATTATA
GTGTTTGGAATTTGAATACCGGTTCTCATTTTTTGGCCACCCTATCCATC
TCTCTTTCACTCTGGCTAATCTTGCATTCCTGAAATTCTTTCGAACTCTC
TCAATGAAGATCAGTGCAAATCAATAATTTTCGCACATAGGTTTTTTCTT
GTATAATCCAAGTTTATTTTGAGAGCTTGTGGTCAAAAATAGTGACCCAT
TGATTGAGTTTTATATGTTGACaactttttattcatttagTGCGAATTTG
CACCTTTGCTTGTACAATGCAAACGGCTGATTTTTCATCACGTTGATAAT
TCTGTGAGCCGGATGTTTGGTCGAGATTTAAATGATCTCTGTGTTAGTTT
ATATTACTGCGGTGTGGTTGTTTTTTAGGAGATGCTGGAAATGTATCGAT
ATGCTATGCAACTTTTTGGTTTCATTGCTTAGTTTCTTCTTAGCAGAAAG
GTTAAACTTCAGTTGACATTCTCTTATTCGATTCCCAAGGGGAATTCGAT
TTTCATGGAATAAGGGAGTATATCAGAAAGTAGAGCGTCGTTTTGAGTGT
TTTTTGTTGATGgtgaatttcaatattatcggATGATCGAGAGTCAAATG
TATTAGCAACATTTCTAATGTTTTTGGTGCGGATCCTATGCGTTACAGGT
TACGCTCTCTTatttgattttcaaggggatttgattttcatcgaataagg
gaataATGGACCGTAGCCCATCGAATGGTTACAgcatcgtttatgagagt
ttcttgttgatgggaactttcaatattatgaagcccatcgaatagtagaa
cgtcgaattagggAGCGTATATAGTTCTACTTAGCGGACAACTTTAGGAA
CAACgtaatgatttttctttgagtATATCAAAGATGGGCTATCTACTTGT
TAGATTAGGGGATGTCGTCTTGTCCGCCATTTAAGGTGTCCGCTAATACA
CATATCCCTTTTCCCCAAAAGCTGTTTAGAAAGTGAGTTCGTTTTAGTTC
TTCATTGTTGAATGGCCTCGGATGTCGGAAGATATCAACGTTCTCGCAAA
TGCTGGCATCAATCGACATTGGTATACTTTAACCAAAACACTTGAGGTGT
Tacgtttttattagaacaaactatataagaacacggctccgatggccaaa
atattaagaacattttaagactttagaAACATCAAATTTCTCAAGAAATT
GCTCAAaagtactcacaaaatggttgaaataaagaacatttcaagaaccT
TTTCAGGCTTATAACTCAAATAGTTCggaacatccgaaggtttccaatac
tttgaaatgaaaaagaataacGAGCACATATTAAAAGCCGTTGGTTATCG
CAAGGATtgtgaaaacattttctttcaccacattttttttttattttaga
ggAAAGAAAAGAGAAGAATTGGGATAAGAAGCTAAAAGATGGATTCTACT
AAAGCCTTatcattttgtttatttgtgTTTATGGTCATCGCTCAAAACCA
CGCTAAGAAATATGTCAAGAAATCGTTCACCATTGCCAATTACAATGAAG
GTAATGAAAAATCTATCCTAAAGTATAAAAGAACAGATCTCTACAgggat
ttcaaataaaatgtttAATTATGAGTTCAAGTGATAAATGCGAGAGTAAC
TATAGTACAACTCTTTTAGCTTTGTATTATTACTTCTGCATTATGGCAAA
ATAGTCTTTTGTCAACATTCCGTCCAATTTATCACTTTTcttttaattca
tgatattcacgacGGAATATTTTCTACGTTAAGACCCCGGTTATTGCCAC
TACtagctaaaaccggggtatttccttAGGAAACATTATgttatgaatat
catgaattgagcCTTCATTACATATACTTCAATGTGTAATTTCGACTCTC
TGAATATAAGAAATTTTAGAACCCCGTGTTATCTACAACTATCGCCATCC
CCTGTGTTCATTAATCAATCCTACTACGTTGACTTATTTGTGTCAAAAAT
CCACTCACAAAACTAATCTTAATTTGTTATTTGCCAGATTTTTGTGCAGA
CAAAATCGAAGGATGTCAAAATTTACGTAACCGATGTAATCTGAAACTTG
TTCAACGGAAATGTAAATCCACTTGTGGTTTGTGTGGTATGAtgtttatt
tttgctttttcaatCTCCATCTCTACAAACCCAGGGCCAGGGGTACGTAG
GCGTATGAGGGTGCAAAGATGTTTTCCTTTTAATAAGGGCGTCTTTTGTT
TTCAACATTTGAATAGTCGCCATGTCGTAGAACTGATTCCCTTTTCCTCC
CGGGTTCTTGCATCCcttgaaagtgaaaaatgacTCAGTTCAATctcagt
ttttataaaaaaattgtcatttgGCCCTGGGAAATTCAAATTACATCGTC
TGCCATGCAGTCTTATGGCGCAAGAGTTTACAATTGTATGCTAGACTAAA
TCATTATCGGTGGATGTAATTAAAGAGTTACATAGAGAGTTACAGAGTTA
CATTGGCACTTGTTATTGAAAAAAACTCACAGATGTCTTGTACAGTAGAT
TGGCTGAACTTTTGGTAAAAACGTAATTAGAGCAATTCCGTGGTATTGGT
ATTTCCAGATGTACCGgccaaattattttttctactGTGTACAAATGCAT
CGATGTTTGAACAAGTTAGTTTTTACCTACCCAGAGTCCTGGGTCTTCTC
CCGTCGCGTGTTTTGCCATCCTACCCCATCTGCCATCTTTCATTATAGGA
CGTCGTGTTTTTATGCGATTTTCCGTCATTTTATTGCCGTCGACTTTGGT
CCAGGATGGCACATTATTTTAATTCAAGGCCAGCAACCTGGGAAAAATTA
AGTAGCTCGACACTAGTGTTTTATTAAAGATATCTATGGGAATCTTCTAC
CCGATATATCCCTGAATACTAGATGACTTCTTGAGGTTACGGTATCTCAT
CAAAAGATCAACTGTTTTTCTATCTATCTCTTCAGTACCCAGTCCGCCAT
TGCATTGTGGGTTGACAAAATATGGCTGTTGCTGGGACAATCAGACACGT
GCGAACTCTTCGAACAAAGATGGTTGTCCACGTAAGCTAATAaatcattt
ctaaaaatatgcTCTTAAAAATTCCAAATACTTGTGGTTTGACATTTTAC
TCCGGATTTTTTTCGAATTGTCTAAAGTTGAAAATATAGCTTTAGTCAGA
TTAGTTTTGCAAGTCTAAGAAAATTTTACCCCACTATTATTTGGATAATA
CTTTTTTATAGGcacttcattttcctttttttttgaaagtcagtTTTTTG
ACACAATCCAATGGATCTGTGGAGGTTTTATGTAAAGTTATAGACGGAAC
GGTGTCAAGAAAAAAGCCGTTTTCTACTGGCACAGGCAACCAACGCCAAA
ATATTCCTCGTTAAATTAAAGGCAAAATTAGCTCCGTCAAAtttgttagt
tttttctttcataattTTTGGGTTGTGGCCTCCTCCTCCTCCGCTAATTT
CAACAAACCAGTCTTTCACTTTCCATTCAGCTTGCGCAGATAAACATTCG
ATGTGCAGATTCTTCAAGAGTGAATGTTCCGCTCGTCCAGATGTTCGGTT
AGTTTGCCCAATTACATGCGGAATACCATGCGGTGAGTGATCttgttttt
gaaatgaaaagacGTTTTACTTAAAGCCCCAGCGGTTTGCATGAATGCGT
AAacgggctttttcacttgcgtgaatgcgtgaaaatttcaaaaaatctag
gTGAATGCGTGAGCAGAAATTgtgtgaattgcgaaaaaaaattgcgtgat
tgcgtgaattgaaggttcTTCACTTTTTCGTAACGACCTCTGTTGTGTGA
ATCTCAGACCTCTACAGATACACACTTCCATATAAGAAACTTATTTGATA
GATGACAAGAGAAGCCTTCAACCATTGCTGTTTTTTTCTTATATCCATAA
AATCGGTATTTTTACTTTCATAAAAGCTGAGAAAGCTCAAGAATTTAATA
GACTTAAATTCACTTTCGCTTTTGGAAAATatgtttgttttctttgattg
aaagctgaaaattctgatcttattttgttcttaatcTTTCAGATCGATGT
CGAGACAGTGAACATCAAAAACTGGTTTGTCCCATGTACAAAGAAGTTGG
TTTCTGTAAAATATCTCCTGATCTCATGCGACAGATCTGTGCAAGGACGT
GCAACTTTTGTCCAATCNCTCTCCTGACCTCATGCGACAGATCTGTGCAA
GGACGTGCAACTTTTGtccaatctgattggttgatgcTCGTAGAGGAAGT
AAAACGATTGGGTTATCCTTGAGCAAAACGCTTTTTGATTGGACGGTTCG
ACATGTTGACGAAAAAGCGAACATTGATTGGTTGGGATAAAAACCGGAAA
CACTCTTCTCGATTCCTTATTAGATTGAAACACAATCGAATGCTAGGCGA
TCAATCGAAAGAAATTAATAATGATGTTCTTTAAGAAACTTTTGGAGACT
TTACTGTATACCAAATATTGCAAATAGAAATTAATGTGACGTTGGCAgtc
aataatttatgtaaacaTAACATTGACAATTACTTTTTCATCGGCGATGT
ATGAAAAAATatatgatttgatttttttaaatttgcatGATGCAGTAGTA
GTATTTATGGTAGCTGGTTCAAAACGCCCTACTAACGTTCATTAGACGTC
CCCAACAtccattagatgaacgttgcaacaacgttgtgtgtcgaATGCTT
TTTCGTAGAacaaattataaaattattagCTAGGAGAAATGATAAGGTCC
AATAGTATTTAATGATTCCATTACCATGACACggggaaaatttattttga
tatctTTGAGTGCTATTTCTTCTAGGTATTTTTTGTAAGTTATTGATAAT
TTATGAAATATTATTGACTAAACTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034139XLOC_034139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054096-exon-scaffold_24-1491911889:135983..136137TCONS_00054096-exon-scaffold_24-1491911889:135983..136137Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:135983..136137TCONS_00054096-exon-scaffold_24-1510915933:135983..136137Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:135983..136137TCONS_00054096-exon-scaffold_24-1575043694:135983..136137Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1491911889:139332..139482TCONS_00054096-exon-scaffold_24-1491911889:139332..139482Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:139332..139482TCONS_00054096-exon-scaffold_24-1510915933:139332..139482Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:139332..139482TCONS_00054096-exon-scaffold_24-1575043694:139332..139482Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1491911889:139970..140068TCONS_00054096-exon-scaffold_24-1491911889:139970..140068Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:139970..140068TCONS_00054096-exon-scaffold_24-1510915933:139970..140068Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:139970..140068TCONS_00054096-exon-scaffold_24-1575043694:139970..140068Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1491911889:140918..141013TCONS_00054096-exon-scaffold_24-1491911889:140918..141013Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:140918..141013TCONS_00054096-exon-scaffold_24-1510915933:140918..141013Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:140918..141013TCONS_00054096-exon-scaffold_24-1575043694:140918..141013Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1491911889:141463..141564TCONS_00054096-exon-scaffold_24-1491911889:141463..141564Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:141463..141564TCONS_00054096-exon-scaffold_24-1510915933:141463..141564Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:141463..141564TCONS_00054096-exon-scaffold_24-1575043694:141463..141564Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1491911889:142025..142860TCONS_00054096-exon-scaffold_24-1491911889:142025..142860Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1510915933:142025..142860TCONS_00054096-exon-scaffold_24-1510915933:142025..142860Clytia hemisphaericaexon
TCONS_00054096-exon-scaffold_24-1575043694:142025..142860TCONS_00054096-exon-scaffold_24-1575043694:142025..142860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:135983..142860 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63775	1.81577	0.567268	0.515332	0	2.39732e-07	0.88007	0	0.862159	0	0	0.596552	4.1927	5.43593	1.29684	1.70399	5.09904	2.68996	4.1098	5.3485	3.68836	3.35107	2.84805	4.12307	1.97937	0	0.895978	0.395702	1.24375	0.456853
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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