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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054088 ID=TCONS_00054088|Name=TCONS_00054088|organism=Clytia hemisphaerica|type=transcript|length=2444bpRun BLAST on NCBI protein sequence of TCONS_00054088-protein >TCONS_00054088-protein ID=TCONS_00054088-protein|Name=TCONS_00054088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp MYILFKNMDFFKINLHFAYYKFLWYKYKLLLAWDGSSTFSKCVVWLLSSGRun BLAST on NCBI transcript from alignment at scaffold_24:120761..126340+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054088 ID=TCONS_00054088|Name=TCONS_00054088|organism=Clytia hemisphaerica|type=transcript|length=5580bp|location=Sequence derived from alignment at scaffold_24:120761..126340+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_24:120761..126340+ >TCONS_00054088 ID=TCONS_00054088|Name=TCONS_00054088|organism=Clytia hemisphaerica|type=CDS|length=12366bp|location=Sequence derived from alignment at scaffold_24:120761..126340+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054088 vs. Swiss-Prot (Human)
Match: UBP30 (Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo sapiens GN=USP30 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.620e-50 Identity = 132/444 (29.73%), Postives = 222/444 (50.00%), Query Frame = 2
Query: 866 KRRKKGLPPGLFNEGNTCFINSVLQAIXXXXXARKWI------YDIEYKESSVSLTTAPSLDILIKVLSNQ-CGNEDVYSALDLMLSLASHGWVISN-QQHDAYEFFQLLIATVNEEMEKVSADGKSFYLIGEVNTASSHIMNRIS-QTLPSLQRSPSSYFATDPFKGSVANKLTCTKCSYQSPIKFEKFGSLILSIQHASLQRGCTLESCFQKLIETEYLSDVVCEKCTKEN-----NNCKV---KTKFQKQTSLSKLPQCLCLQLQRTYYTNDGSTRKNAAFVRFPEFLDVSPFRYS-------------SKDSKSKINIPDKTTRP-------------LLCGGSSNFSTKKS---------------SAWSNWYRLISVVLHYGDAYDGHFAVFRRTPGDQQ-------KWVYISDQQVKRVSKRTVFDSFAYLLFYEKI 2002
K+R+KGL PGL N GNTCF+NS+LQ +S+ + +W+ Y + KE + +L L+K LS Q +++V A L+ L + W IS+ ++ DA+E F ++ +++ +E ++ + + + S +I+ +T S + + + + PF G + + + C C +QSP++F+ F SL LSI A+ TL+ C I +E + DVVC+ CTK N KV +T F KQ L KLPQCLC+ LQR +++ G+ K V+F EFL + ++Y +K+ + + D P + G+ + S + S+ + +RL++VV+H+GD + GHF +RR+P + +W+++SD V++ S + V S AYLLFYE++
Sbjct: 60 KKRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDR-QPRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGHKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERV 502 The following BLAST results are available for this feature:
BLAST of TCONS_00054088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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