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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054086 ID=TCONS_00054086|Name=TCONS_00054086|organism=Clytia hemisphaerica|type=transcript|length=2491bp
TCTTGCAGAAAGTCGATACCAAGTAGCAATTGGTGGGTTACATCCCTCAG
CACCATTGGCTTGATCGTGAAAGTTCTTCCGGCAATTTCCACTTCAAATT
GGGTATGACCAATAATATGAAGGTACGATCCACCGATTCCTCTAGCCTTT
TCTTCAGATTTCGTAATCGACAAGCCCAATTTCTTGGCGAAAGTTTCAGA
CAAAACGGACTTTTGAGCACCGGAATCACAGAGTGCGTCTATGTCGAAAG
CACCAATGGTTACAGCCAACAGTGGTCCTTCGCCTTTGGCCTCTTCCAAG
CATCTGACATTCGCTGACATTTGCCCACATTGTCTTGCACGGTGACCTTT
ACCACCACAGTTCCAGCAAAGGAGGTCACCAACCGTTCTTTTTCGAGGAC
TTCTGCATGTCTCTTCAGTGTGACCTTGTTTGCCACAATTTTGGCAGTTT
TGCGCATTTCTTTGGTCGTAAGTATTTCTTTGGCTGTATGCACCTCTTTG
GTTGTACCCGTTACCTTGGTTGTACCCATTACTTCGGTTGTAACCTCTCT
GCCCACTTCTGTTTTGTGATTTGAGACGGTTGATCTCTCGTAGCAAGGCA
GCTACATCAGCTTGGTTGTTATTCACCGCTGCTTTTACCGCAGGAGCTTC
ATCCAGCCTCTCTTCGATTGCGCTCAGTTTATCGCAGATAGCAGTTAGGC
GTGCATCTACTGGCTTCGTTCTCCTGACGGATTCCTTCATCTTTAAGCTT
CTCACTGCACTATCGTAGGTTTTTATTTCCTTTAGATCCAAGTAGTCCTG
GAGATCTTCCCGGAGTCCACCTGTCAGGAGGTCCAAGTGACGATCTTCGG
GAACAGAGAGCTCTGTGAACAAATACTCTAATCGCTCAAGGTATTCGACG
AGAGGTAACTCGCCCTGCTGGATGTTACGAAGTTCACGTCTTAGAATGCA
GATGTTCTCGGGTGAATCAAACATCTTCTCGATTGCTTTAATGGCGTTTT
CATATGTCTTTTTCTTCTTGGGATCCAGCCGGTGGTAATACAATTTAGGT
CTGCCTTCCAATATCGTTGGGAGAGCAGCAAGCTTATCTTCATCAGACCA
TTGACCAAGTTTAGTGATGTCCTCGAATTCTTGGAGAAACATCTTGAACG
ACTTTGATTCTGTACCATCGAAGATCGGCAGGTCCTTCTTTGTAACATTA
GGTCGAGTCAGCTTGTGGATGGACTCGATAAATGATTCCTCCGCAGAAAA
AGACTTCAAGTCAGCTTGGTCGTTACCTCTTTGTGACTGTAGGCCATGTC
TTCTCTGTGGAAATGAGTTGCGGTCCGAAGGCTCTTCTTTTGAAGGATAA
GGTGTTGATTCCATCTTAATTCTCTTGACTTCAGCCGCTAAGCGGTCGAT
TTCATCGCTTAATTGTTGTCCATTGGAGGCAATTCTGTCTCTGTCATCCA
GCTGCTGGAGATCGTCCAACAAGGGTGCGTAATGCGAACTCCTTCTTCGT
CTCAAAAAGGTCTTTTCCGGAAGTGATGGTGGGCGGCTGCCATCGTCGCT
ATTGTTGTCATACATAGTGCGAGGTCTGAATTCTCTAGTCGCTGGCGCAA
GCAAGACAAATTGCGGTCAATTGGTATCTCTTTGTTGGTTTGGTTTGCAA
GTTGGCGATCTACGGTTGAACAGCTGGCAAATCTTAAGGTAAATCTAGAA
TTGGTCGCTTGGGTGGTGATCAGTGATCACAGTGTATCCAATAGACTTTC
GGTCTCACTTGAGCGCGCCTAAGGCTCGCAATAGTGAGTTATGAAGATTG
TATGGATAGGACCGTGCTATCTGACCAAGTCGCGATGTATTCAATAGATC
CTCGGTCTCACCTGAACGAACCGAAGGCTCGTAAGAGTGAGTTATGAAGA
TTGTATGAGTTCTATTACCTTATTTTGGATCGTCGATGTCCGCGATACGT
CGATGGCAATCGGCGATCTTCCTTTTCCGCTCCTCAACACGTCCTTTCAG
CTGCTTGATgtgtttctcttctttcttctgCAACCTCTTCAGCTGTACTA
GCTTCTTCTCGTATTCCTTTTTGGATGGAATACCAGTTGGTTGTGTTTTA
AGGCGTCGGTTCCCGAACCGTGGCCTTTCCTCAGAGTGAGGAACCTGTGA
AGGGCTGACTTCTTTGCTGTCCCTCTGGTCCCGTTGCACAAACTTCCTTT
GTTCTTTCCTTTGTTGGTTTGTAGttggtgttgttgttgttgtactCTTT
GGGATTTTGTACGTCCCCAGCAAGCTTAGCGGGTCCTTTGAGCTTCTGTT
TGAAATGACACTTTTCAAACGTCTTTGTTCTTCAAAGATCTTGCCAAGAA
TGTCCGACATACCCAAACTACTGTAACAAGTCACTGAAGTGAAAAccttt
cattaaatttttagcAGCGACAGATGCCAACAGGTTGATTGAAATATAGA
GTCGATCTTGTTAAGAAACAATCAGATAAGTTTGAAAACAG Run BLAST on NCBI protein sequence of TCONS_00054086-protein >TCONS_00054086-protein ID=TCONS_00054086-protein|Name=TCONS_00054086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MYDNNSDDGSRPPSLPEKTFLRRRRSSHYAPLLDDLQQLDDRDRIASNGQ
QLSDEIDRLAAEVKRIKMESTPYPSKEEPSDRNSFPQRRHGLQSQRGNDQ
ADLKSFSAEESFIESIHKLTRPNVTKKDLPIFDGTESKSFKMFLQEFEDI
TKLGQWSDEDKLAALPTILEGRPKLYYHRLDPKKKKTYENAIKAIEKMFD
SPENICILRRELRNIQQGELPLVEYLERLEYLFTELSVPEDRHLDLLTGG
LREDLQDYLDLKEIKTYDSAVRSLKMKESVRRTKPVDARLTAICDKLSAI
EERLDEAPAVKAAVNNNQADVAALLREINRLKSQNRSGQRGYNRSNGYNQ
GNGYNQRGAYSQRNTYDQRNAQNCQNCGKQGHTEETCRSPRKRTVGDLLC
WNCGGKGHRARQCGQMSANVRCLEEAKGEGPLLAVTIGAFDIDALCDSGA
QKSVLSETFAKKLGLSITKSEEKARGIGGSYLHIIGHTQFEVEIAGRTFT
IKPMVLRDVTHQLLLGIDFLQ Run BLAST on NCBI transcript from alignment at scaffold_239:122769..125259 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054086 ID=TCONS_00054086|Name=TCONS_00054086|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at scaffold_239:122769..125259 (Clytia hemisphaerica)
CTGTTTTCAAACTTATCTGATTGTTTCTTAACAAGATCGACTCTATATTT
CAATCAACCTGTTGGCATCTGTCGCTgctaaaaatttaatgaaaggTTTT
CACTTCAGTGACTTGTTACAGTAGTTTGGGTATGTCGGACATTCTTGGCA
AGATCTTTGAAGAACAAAGACGTTTGAAAAGTGTCATTTCAAACAGAAGC
TCAAAGGACCCGCTAAGCTTGCTGGGGACGTACAAAATCCCAAAGagtac
aacaacaacaacaccaaCTACAAACCAACAAAGGAAAGAACAAAGGAAGT
TTGTGCAACGGGACCAGAGGGACAGCAAAGAAGTCAGCCCTTCACAGGTT
CCTCACTCTGAGGAAAGGCCACGGTTCGGGAACCGACGCCTTAAAACACA
ACCAACTGGTATTCCATCCAAAAAGGAATACGAGAAGAAGCTAGTACAGC
TGAAGAGGTTGcagaagaaagaagagaaacacATCAAGCAGCTGAAAGGA
CGTGTTGAGGAGCGGAAAAGGAAGATCGCCGATTGCCATCGACGTATCGC
GGACATCGACGATCCAAAATAAGGTAATAGAACTCATACAATCTTCATAA
CTCACTCTTACGAGCCTTCGGTTCGTTCAGGTGAGACCGAGGATCTATTG
AATACATCGCGACTTGGTCAGATAGCACGGTCCTATCCATACAATCTTCA
TAACTCACTATTGCGAGCCTTAGGCGCGCTCAAGTGAGACCGAAAGTCTA
TTGGATACACTGTGATCACTGATCACCACCCAAGCGACCAATTCTAGATT
TACCTTAAGATTTGCCAGCTGTTCAACCGTAGATCGCCAACTTGCAAACC
AAACCAACAAAGAGATACCAATTGACCGCAATTTGTCTTGCTTGCGCCAG
CGACTAGAGAATTCAGACCTCGCACTATGTATGACAACAATAGCGACGAT
GGCAGCCGCCCACCATCACTTCCGGAAAAGACCTTTTTGAGACGAAGAAG
GAGTTCGCATTACGCACCCTTGTTGGACGATCTCCAGCAGCTGGATGACA
GAGACAGAATTGCCTCCAATGGACAACAATTAAGCGATGAAATCGACCGC
TTAGCGGCTGAAGTCAAGAGAATTAAGATGGAATCAACACCTTATCCTTC
AAAAGAAGAGCCTTCGGACCGCAACTCATTTCCACAGAGAAGACATGGCC
TACAGTCACAAAGAGGTAACGACCAAGCTGACTTGAAGTCTTTTTCTGCG
GAGGAATCATTTATCGAGTCCATCCACAAGCTGACTCGACCTAATGTTAC
AAAGAAGGACCTGCCGATCTTCGATGGTACAGAATCAAAGTCGTTCAAGA
TGTTTCTCCAAGAATTCGAGGACATCACTAAACTTGGTCAATGGTCTGAT
GAAGATAAGCTTGCTGCTCTCCCAACGATATTGGAAGGCAGACCTAAATT
GTATTACCACCGGCTGGATCCCAAGAAGAAAAAGACATATGAAAACGCCA
TTAAAGCAATCGAGAAGATGTTTGATTCACCCGAGAACATCTGCATTCTA
AGACGTGAACTTCGTAACATCCAGCAGGGCGAGTTACCTCTCGTCGAATA
CCTTGAGCGATTAGAGTATTTGTTCACAGAGCTCTCTGTTCCCGAAGATC
GTCACTTGGACCTCCTGACAGGTGGACTCCGGGAAGATCTCCAGGACTAC
TTGGATCTAAAGGAAATAAAAACCTACGATAGTGCAGTGAGAAGCTTAAA
GATGAAGGAATCCGTCAGGAGAACGAAGCCAGTAGATGCACGCCTAACTG
CTATCTGCGATAAACTGAGCGCAATCGAAGAGAGGCTGGATGAAGCTCCT
GCGGTAAAAGCAGCGGTGAATAACAACCAAGCTGATGTAGCTGCCTTGCT
ACGAGAGATCAACCGTCTCAAATCACAAAACAGAAGTGGGCAGAGAGGTT
ACAACCGAAGTAATGGGTACAACCAAGGTAACGGGTACAACCAAAGAGGT
GCATACAGCCAAAGAAATACTTACGACCAAAGAAATGCGCAAAACTGCCA
AAATTGTGGCAAACAAGGTCACACTGAAGAGACATGCAGAAGTCCTCGAA
AAAGAACGGTTGGTGACCTCCTTTGCTGGAACTGTGGTGGTAAAGGTCAC
CGTGCAAGACAATGTGGGCAAATGTCAGCGAATGTCAGATGCTTGGAAGA
GGCCAAAGGCGAAGGACCACTGTTGGCTGTAACCATTGGTGCTTTCGACA
TAGACGCACTCTGTGATTCCGGTGCTCAAAAGTCCGTTTTGTCTGAAACT
TTCGCCAAGAAATTGGGCTTGTCGATTACGAAATCTGAAGAAAAGGCTAG
AGGAATCGGTGGATCGTACCTTCATATTATTGGTCATACCCAATTTGAAG
TGGAAATTGCCGGAAGAACTTTCACGATCAAGCCAATGGTGCTGAGGGAT
GTAACCCACCAATTGCTACTTGGTATCGACTTTCTGCAAGA Coding sequence (CDS) from alignment at scaffold_239:122769..125259 >TCONS_00054086 ID=TCONS_00054086|Name=TCONS_00054086|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_239:122769..125259 (Clytia hemisphaerica)
ATGTATGACAACAATAGCGACGATGGCAGCCGCCCACCATCACTTCCGGA
AAAGACCTTTTTGAGACGAAGAAGGAGTTCGCATTACGCACCCTTGTTGG
ACGATCTCCAGCAGCTGGATGACAGAGACAGAATTGCCTCCAATGGACAA
CAATTAAGCGATGAAATCGACCGCTTAGCGGCTGAAGTCAAGAGAATTAA
GATGGAATCAACACCTTATCCTTCAAAAGAAGAGCCTTCGGACCGCAACT
CATTTCCACAGAGAAGACATGGCCTACAGTCACAAAGAGGTAACGACCAA
GCTGACTTGAAGTCTTTTTCTGCGGAGGAATCATTTATCGAGTCCATCCA
CAAGCTGACTCGACCTAATGTTACAAAGAAGGACCTGCCGATCTTCGATG
GTACAGAATCAAAGTCGTTCAAGATGTTTCTCCAAGAATTCGAGGACATC
ACTAAACTTGGTCAATGGTCTGATGAAGATAAGCTTGCTGCTCTCCCAAC
GATATTGGAAGGCAGACCTAAATTGTATTACCACCGGCTGGATCCCAAGA
AGAAAAAGACATATGAAAACGCCATTAAAGCAATCGAGAAGATGTTTGAT
TCACCCGAGAACATCTGCATTCTAAGACGTGAACTTCGTAACATCCAGCA
GGGCGAGTTACCTCTCGTCGAATACCTTGAGCGATTAGAGTATTTGTTCA
CAGAGCTCTCTGTTCCCGAAGATCGTCACTTGGACCTCCTGACAGGTGGA
CTCCGGGAAGATCTCCAGGACTACTTGGATCTAAAGGAAATAAAAACCTA
CGATAGTGCAGTGAGAAGCTTAAAGATGAAGGAATCCGTCAGGAGAACGA
AGCCAGTAGATGCACGCCTAACTGCTATCTGCGATAAACTGAGCGCAATC
GAAGAGAGGCTGGATGAAGCTCCTGCGGTAAAAGCAGCGGTGAATAACAA
CCAAGCTGATGTAGCTGCCTTGCTACGAGAGATCAACCGTCTCAAATCAC
AAAACAGAAGTGGGCAGAGAGGTTACAACCGAAGTAATGGGTACAACCAA
GGTAACGGGTACAACCAAAGAGGTGCATACAGCCAAAGAAATACTTACGA
CCAAAGAAATGCGCAAAACTGCCAAAATTGTGGCAAACAAGGTCACACTG
AAGAGACATGCAGAAGTCCTCGAAAAAGAACGGTTGGTGACCTCCTTTGC
TGGAACTGTGGTGGTAAAGGTCACCGTGCAAGACAATGTGGGCAAATGTC
AGCGAATGTCAGATGCTTGGAAGAGGCCAAAGGCGAAGGACCACTGTTGG
CTGTAACCATTGGTGCTTTCGACATAGACGCACTCTGTGATTCCGGTGCT
CAAAAGTCCGTTTTGTCTGAAACTTTCGCCAAGAAATTGGGCTTGTCGAT
TACGAAATCTGAAGAAAAGGCTAGAGGAATCGGTGGATCGTACCTTCATA
TTATTGGTCATACCCAATTTGAAGTGGAAATTGCCGGAAGAACTTTCACG
ATCAAGCCAATGGTGCTGAGGGATGTAACCCACCAATTGCTACTTGGTAT
CGACTTTCTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054086-exon-scaffold_239-1491911889:122769..125259 | TCONS_00054086-exon-scaffold_239-1491911889:122769..125259 | Clytia hemisphaerica | exon |
| TCONS_00054086-exon-scaffold_239-1510915933:122769..125259 | TCONS_00054086-exon-scaffold_239-1510915933:122769..125259 | Clytia hemisphaerica | exon |
| TCONS_00054086-exon-scaffold_239-1575043694:122769..125259 | TCONS_00054086-exon-scaffold_239-1575043694:122769..125259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:122769..125259 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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