TCONS_00054080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054080
Unique NameTCONS_00054080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054080 ID=TCONS_00054080|Name=TCONS_00054080|organism=Clytia hemisphaerica|type=transcript|length=466bp
NTTTTTTCGGTGTACAAGTTTTACTGTTCGAAAACATCAGTTCGCAGAAT
CAAATTGTTGCTTTCACTCAAATTATAGGCTTCCAAAGCTTTCCCAGATA
TGAGAAATGAAATGGAACATTCAATAATATcataattcaatccaaaacaa
taCATAAGCTCAGTTTCCATGTCAAAAACACAGCTGACTGCCTCCAAAAt
gtgaatgtttttgaaaataccacTTCTTCGGTTAACATCtttaattacgt
catattaAGAAATCCCGGGaaaaaaaggcggtattgactTTGACGcccaa
aaagggcgtaaaaagagctttcatttGGTATGTCATGATGCTATGTTTAG
AGCAGCCAAACGGAAATGAGGCCTTAGCAACGGATGCGATTTCCCGTTGC
TAAGGAGAAAATTGTATACCAGGGCTCATAAGAAACCCAATATATCGGCA
GATATTTATGCTACGG
Run BLAST on NCBI

transcript from alignment at scaffold_239:52256..52721

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054080 ID=TCONS_00054080|Name=TCONS_00054080|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_239:52256..52721 (Clytia hemisphaerica)
CCGTAGCATAAATATCTGCCGATATATTGGGTTTCTTATGAGCCCTGGTA
TACAATTTTCTCCTTAGCAACGGGAAATCGCATCCGTTGCTAAGGCCTCA
TTTCCGTTTGGCTGCTCTAAACATAGCATCATGACATACCaaatgaaagc
tctttttacgccctttttgggCGTCAAagtcaataccgcctttttttCCC
GGGATTTCTtaatatgacgtaattaaaGATGTTAACCGAAGAAgtggtat
tttcaaaaacattcacaTTTTGGAGGCAGTCAGCTGTGTTTTTGACATGG
AAACTGAGCTTATGtattgttttggattgaattatgATATTATTGAATGT
TCCATTTCATTTCTCATATCTGGGAAAGCTTTGGAAGCCTATAATTTGAG
TGAAAGCAACAATTTGATTCTGCGAACTGATGTTTTCGAACAGTAAAACT
TGTACACCGAAAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034130XLOC_034130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054080-exon-scaffold_239-1491911889:52256..52721TCONS_00054080-exon-scaffold_239-1491911889:52256..52721Clytia hemisphaericaexon
TCONS_00054080-exon-scaffold_239-1510915933:52256..52721TCONS_00054080-exon-scaffold_239-1510915933:52256..52721Clytia hemisphaericaexon
TCONS_00054080-exon-scaffold_239-1575043694:52256..52721TCONS_00054080-exon-scaffold_239-1575043694:52256..52721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_239supercontigscaffold_239:52256..52721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49243	1.90209	0.354867	0.391782	9.26372	7.63817	6.35757	9.20694	0.90241	1.10551	1.74713	1.76379	2.52716	1.10449	0.51895	1.54029	0.595123	1.03404	1.77754	0	1.67199	0.939422	0.497287	0.608564	1.28857	2.54536	2.06188	2.02092	0.856876	1.68194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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