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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054077 ID=TCONS_00054077|Name=TCONS_00054077|organism=Clytia hemisphaerica|type=transcript|length=1027bp
atcaacaacaacaacttgcAGACGATCATGTAGATGCGCATCAGCTTTTG
GAAGAACATCAACAAAAGAACTCTTTAAGTGGATGGTTTGTCATTTTTAT
CTCTTTCTACCAAACCATTTATATTATCCGACCCTCAAGAAACACAACCA
GTTCATCGCAAATCTTTTCGACAATCAATGATGTCTTTTTTACCCTTTTC
ACTGGAACTTTGGATATCGTCTCACCGAATATCACCATGTGTCCTTTACA
GACACAAAATGCCGACCTCGTTGAATTCATCAAAATAAGCCCTTGGATTG
CATGTATAAGTTTCACCATTTTCTTGATCATTATTTTGACATATGTGGTG
AAATTCAAGAGAAGACAGCTTCACGGAAATGGCTATCAGAATCTTGAAGC
TGCTGGTGAAAATGGATGGCAAGAAAGAACACTTTCTCATCTTCAAAAAG
GTGTCACTCAAATGATATTTATTGTTTACATTCCCATTAGTATGTTTTTG
CTGCGTTTACTGAAATGTGTTGAAATAAATGGTGAGCATTATCAGTTCAT
TCAAGCCTCCAACCAATGTTATTCCACGACTCAAATCGTTGCTTGGATCT
TTCTCATTTTCTGGTCAATCTTCTTTTGTCCAGCATTATACCTGGCAACG
AGATTGCTGCAGATGAAAAAAATTGCGGTGAACGAGTTTGTGATTGTGTT
GATTTTCCCGCTTCAAATTGTTTGGTATTTAATTCGAATAGGCATGCGTA
GAAATGACAACGAACAGGTAGTGAATGATGACAAAGAAAACATCTACAAA
GTGATGAGCAACCCTTTCAAAAGAAACGATGAGAACGTCCCCATTCAGTG
GCTACCAATAATTTTATTCAGAGCTTTTATTTTGGCCATCATTTCAACCT
TTGTGTTGAATACCGAGAAACGAGTTTTGGCAAATACCGCTTTTAGTGTT
GTCCTTATGATCAAAGATTCCGTTGTTTGGCCATACCGGAGTGTTCGTTT
GAATACTCTGAATATTATGTGTTGGTG Run BLAST on NCBI protein sequence of TCONS_00054077-protein >TCONS_00054077-protein ID=TCONS_00054077-protein|Name=TCONS_00054077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
QQQQLADDHVDAHQLLEEHQQKNSLSGWFVIFISFYQTIYIIRPSRNTTS
SSQIFSTINDVFFTLFTGTLDIVSPNITMCPLQTQNADLVEFIKISPWIA
CISFTIFLIIILTYVVKFKRRQLHGNGYQNLEAAGENGWQERTLSHLQKG
VTQMIFIVYIPISMFLLRLLKCVEINGEHYQFIQASNQCYSTTQIVAWIF
LIFWSIFFCPALYLATRLLQMKKIAVNEFVIVLIFPLQIVWYLIRIGMRR
NDNEQVVNDDKENIYKVMSNPFKRNDENVPIQWLPIILFRAFILAIISTF
VLNTEKRVLANTAFSVVLMIKDSVVWPYRSVRLNTLNIMCW Run BLAST on NCBI transcript from alignment at scaffold_239:48531..49557 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054077 ID=TCONS_00054077|Name=TCONS_00054077|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at scaffold_239:48531..49557 (Clytia hemisphaerica)
CACCAACACATAATATTCAGAGTATTCAAACGAACACTCCGGTATGGCCA
AACAACGGAATCTTTGATCATAAGGACAACACTAAAAGCGGTATTTGCCA
AAACTCGTTTCTCGGTATTCAACACAAAGGTTGAAATGATGGCCAAAATA
AAAGCTCTGAATAAAATTATTGGTAGCCACTGAATGGGGACGTTCTCATC
GTTTCTTTTGAAAGGGTTGCTCATCACTTTGTAGATGTTTTCTTTGTCAT
CATTCACTACCTGTTCGTTGTCATTTCTACGCATGCCTATTCGAATTAAA
TACCAAACAATTTGAAGCGGGAAAATCAACACAATCACAAACTCGTTCAC
CGCAATTTTTTTCATCTGCAGCAATCTCGTTGCCAGGTATAATGCTGGAC
AAAAGAAGATTGACCAGAAAATGAGAAAGATCCAAGCAACGATTTGAGTC
GTGGAATAACATTGGTTGGAGGCTTGAATGAACTGATAATGCTCACCATT
TATTTCAACACATTTCAGTAAACGCAGCAAAAACATACTAATGGGAATGT
AAACAATAAATATCATTTGAGTGACACCTTTTTGAAGATGAGAAAGTGTT
CTTTCTTGCCATCCATTTTCACCAGCAGCTTCAAGATTCTGATAGCCATT
TCCGTGAAGCTGTCTTCTCTTGAATTTCACCACATATGTCAAAATAATGA
TCAAGAAAATGGTGAAACTTATACATGCAATCCAAGGGCTTATTTTGATG
AATTCAACGAGGTCGGCATTTTGTGTCTGTAAAGGACACATGGTGATATT
CGGTGAGACGATATCCAAAGTTCCAGTGAAAAGGGTAAAAAAGACATCAT
TGATTGTCGAAAAGATTTGCGATGAACTGGTTGTGTTTCTTGAGGGTCGG
ATAATATAAATGGTTTGGTAGAAAGAGATAAAAATGACAAACCATCCACT
TAAAGAGTTCTTTTGTTGATGTTCTTCCAAAAGCTGATGCGCATCTACAT
GATCGTCTgcaagttgttgttgttgat Coding sequence (CDS) from alignment at scaffold_239:48531..49557 >TCONS_00054077 ID=TCONS_00054077|Name=TCONS_00054077|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_239:48531..49557 (Clytia hemisphaerica)
CCAACACATAATATTCAGAGTATTCAAACGAACACTCCGGTATGGCCAAA
CAACGGAATCTTTGATCATAAGGACAACACTAAAAGCGGTATTTGCCAAA
ACTCGTTTCTCGGTATTCAACACAAAGGTTGAAATGATGGCCAAAATAAA
AGCTCTGAATAAAATTATTGGTAGCCACTGAATGGGGACGTTCTCATCGT
TTCTTTTGAAAGGGTTGCTCATCACTTTGTAGATGTTTTCTTTGTCATCA
TTCACTACCTGTTCGTTGTCATTTCTACGCATGCCTATTCGAATTAAATA
CCAAACAATTTGAAGCGGGAAAATCAACACAATCACAAACTCGTTCACCG
CAATTTTTTTCATCTGCAGCAATCTCGTTGCCAGGTATAATGCTGGACAA
AAGAAGATTGACCAGAAAATGAGAAAGATCCAAGCAACGATTTGAGTCGT
GGAATAACATTGGTTGGAGGCTTGAATGAACTGATAATGCTCACCATTTA
TTTCAACACATTTCAGTAAACGCAGCAAAAACATACTAATGGGAATGTAA
ACAATAAATATCATTTGAGTGACACCTTTTTGAAGATGAGAAAGTGTTCT
TTCTTGCCATCCATTTTCACCAGCAGCTTCAAGATTCTGATAGCCATTTC
CGTGAAGCTGTCTTCTCTTGAATTTCACCACATATGTCAAAATAATGATC
AAGAAAATGGTGAAACTTATACATGCAATCCAAGGGCTTATTTTGATGAA
TTCAACGAGGTCGGCATTTTGTGTCTGTAAAGGACACATGGTGATATTCG
GTGAGACGATATCCAAAGTTCCAGTGAAAAGGGTAAAAAAGACATCATTG
ATTGTCGAAAAGATTTGCGATGAACTGGTTGTGTTTCTTGAGGGTCGGAT
AATATAAATGGTTTGGTAGAAAGAGATAAAAATGACAAACCATCCACTTA
AAGAGTTCTTTTGTTGATGTTCTTCCAAAAGCTGATGCGCATCTACATGA
TCGTCTgcaagttgttgttgttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054077-exon-scaffold_239-1491911889:48531..49557 | TCONS_00054077-exon-scaffold_239-1491911889:48531..49557 | Clytia hemisphaerica | exon |
| TCONS_00054077-exon-scaffold_239-1510915933:48531..49557 | TCONS_00054077-exon-scaffold_239-1510915933:48531..49557 | Clytia hemisphaerica | exon |
| TCONS_00054077-exon-scaffold_239-1575043694:48531..49557 | TCONS_00054077-exon-scaffold_239-1575043694:48531..49557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:48531..49557 . |
Blast
The following BLAST results are available for this feature:
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