TCONS_00054069 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054069
Unique Name	TCONS_00054069
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1054

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_239:74447..77803-

transcript sequence

>TCONS_00054069 ID=TCONS_00054069|Name=TCONS_00054069|organism=Clytia hemisphaerica|type=transcript|length=1054bp
TTTTTGATCAATGCGATGGGTTTGGTGGGCGTTGTGTATGTGGTTTCATT
CGCCACGCCCTATGTCATGGCTTTCTTCTTTCCGATcattattttatata
ttattgtTCAGaGAATCTACGTGAAGTCATCGAGGCAATTAAAACGGATT
ATCTCGATCAACCAGTCGCcaattttcaatcatttcatGGAAAGTATAAA
TGGAGCAAGCACCATAAGAGCGTTCGGTAAAGTAGACGAATTTATCGACG
AAAACCACAGAAGGATTGACAAGCTACAAAGTGCATATCTAACGTCTGTT
GCTTGTGATAGATGGATGATTCTAAACGTCAAAATGTTGGGAAATTTTGT
GGCTTTCTTCGCCGCATTATTTTGCATCTTGGAAAAAGGGAAGATTTCAC
CCGGTATCCTTGGCCTTTGTGTGTCTTATGCCATTCAGATGACGCAATCT
TTGATTTCATTGGTTCGTTCCTCAAATGGTTTGGAAGTCAACTTGGTTTC
AATCGAGCGAATAAATGATTACATATCCAAACCGAGAGAGACCGACATGA
TGATTGAAGAGTCAAAGAAAATCCTACCTGATTGGCCACAACATGGAGAA
ATCTCATTGGTTAATTACTCAGTGCGCTATCGTCCCAGTCTTCCGCTTGT
TCTGAATAATATCAACATTACTATCAAGCCCAAAGAGAAGGTTGGAATTG
TTGGTCGAACAGGGGCTGGAAAATCTTCAATCACTTTAGCCTTATTCCGT
ATCATTGAAGCATCTACAGGCTATATTTCCATTGATGGTGTCAAAATATC
AAATGTCGCTTTACAAGAGTTGCGCTCCAAGATCAGCATTATTCCTCAGG
ATCCAGTCTTGTTTTCGGGGTCTATCCGCTTTAACGTTGATCCGTTTCAA
CGGCATACCGATGAACAAATTTGGAACACTTTGGAAATTTCTCGTTTGAA
GAAATTTGTTTCTACACTTTCTGGTGGATTGGATTCTGAAGTTCAAGAAG
GCGGTGATAATTTGAGTGTCGGGCAACGTCAATTAATTTGTCTTGCAAGA
GCTC

Run BLAST on NCBI

transcript from alignment at scaffold_239:74447..77803-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054069 ID=TCONS_00054069|Name=TCONS_00054069|organism=Clytia hemisphaerica|type=transcript|length=3357bp|location=Sequence derived from alignment at scaffold_239:74447..77803- (Clytia hemisphaerica)
TTTTTGATCAATGCGATGGGTTTGGTGGGCGTTGTGTATGTGGTTTCATT
CGCCACGCCCTATGTCATGGCTTTCTTCTTTCCGATCATTATTTTATATA
TTATTGTTCAGGTAAGATTTCTCATTTCTTTATATTATCACCAATCAGCC
ATTGATTTTTTCCATTTAAATACATTTCCGTCAAATTGTTATACTGGTGC
AATTCAAACGTATTGTAACAATTTAAGCATACAGTTGATTACCTTAAATA
TAATTTTTCTTTCTCAGAGAATCTACGTGAAGTCATCGAGGCAATTAAAA
CGGATTATCTCGATCAACCAGTCGCCAATTTTCAATCATTTCATGGAAAG
TATAAATGGAGCAAGCACCATAAGAGCGTTCGGTAAAGTAGACGAATTTA
TCGACGAAAACCACAGAAGGATTGACAAGCTACAAAGTGCATATCTAACG
TCTGTTGCTTGTGATAGGTAAGGTATAAATAAATCTGACATTTTGATCTG
ACTTTATGTTTAATTGCGGCGGGAGAAACTTGGCCTCTTTTAATTCCGTC
AAAAATAAGATGAGGTATTTCTTGCAGCCCTCGCGCTAAAAGTTCTATTA
GGTCTATCGACCTCTCTGAAATAATCATGCTCAACATTTTACAACTTATG
GAGTATCTTTTTCCATTCTGTGATTAGGCTGCTGATATCCACTAACGGAT
CCGTACCCCTTATAATACTACCTGCGGTTTTGTAGAGGTCTGCAATTCAG
ACCAATTCTGTGAGCAATTATTAGTTTCATACTTAGGAGTATTTTATGCT
TGCAATTACCTGTCTAACCCGGGGGGGGGGGCACTTAAAGTTATAGAAGG
ATATGTACTTCACTGACTCCAGCGCCATCAAAAATTATCAGAAAGCAAAG
TTTGGTTAGAAGTAGACTCTAGTCCATTTATACCTTACTTCCAAAAAAGG
TTTCACCGAACTTGAGCTAACTTTCTTTTAAACGCTAATAAATCCACCAA
CTTTAACTCTCCATATAACCCCCTGTAAATTAAAATTACCAAAGATTTTC
TTTATCAATTTCAGATGGATGATTCTAAACGTCAAAATGTTGGGAAATTT
TGTGGCTTTCTTCGCCGCATTATTTTGCATCTTGGAAAAAGGGAAGATTT
CACCCGGTATCCTTGGCCTTTGTGTGTCTTATGCCATTCAGGTATTTATG
ATATTATCACCATGTTATCCCACTTTCTGAAAACGACTACAATAAGTTTA
GAACTTAAGATTTTATGAAATGTTACGTTGATTCAAGTGAGTTAAGAGAA
CTTTCTAGGTATTGTAAATACAATTGACGCTCTCTAATTCGATTTTCAAT
CAGATCTGTATCGAATAAGGGAGCGTATCGAATAGTAGAACGGTTATGAG
AGTTGCTTTTGTTGACGGTGGCTTTCAATAATATTGACTAATGGGGGTAT
CGAATAGAAGAGCGTCGAGTTAGGGAGCGTCAATTGTATTGCGAAAATGC
AGACTTCTTACCTTTTTCACATTTTTTTCAGATGACGCAATCTTTGATTT
CATTGGTTCGTTCCTCAAATGGTTTGGAAGTCAACTTGGTTTCAATCGAG
CGAATAAATGATTACATATCCAAACCGAGAGAGGTACGTTGTTTCTATAA
GAGACACCACGGAATTTATAAAGTAACAAGTTACCTATTTGAACTTTTAG
TGCCTTAATATGAATTGTACCGCAAGGTAGACTTTCAATTTCAAGATATG
NTAAAGTTAAAGTTACTTATTTGAACTTTTAGTGCCTTAATATGAATTGT
ACCGTGGCAAGGTAGACTTTCAATTTCAAGATATGCACCATATCTCACAA
TTTTCGAAATTTTCTACCCAATATGTCACTTTTCTATTGTATAAGAGATG
GATTTGGGGAGATCTCAAAAATGTTGAAAATCCCCAGTCGCTAATAAATG
GTGGGCTCTAGCCTTTTTTCTGTCAAACTCTTAAAACGCTCTTCTGGCAA
AACTTAAGGATGAAATAAGTAATATCGTGAGAGGTACCCAATGTAAAAGT
TATCCTTTCTTGTTTAGACCGACATGATGATTGAAGAGTCAAAGAAAATC
CTACCTGATTGGCCACAACATGGAGAAATCTCATTGGTTAATTACTCAGT
GCGCTATCGTCCCAGTCTTCCGCTTGTTCTGAATAATATCAACATTACTA
TCAAGCCCAAAGAGAAGGTATATGCTATGCGAGGAAGCTAGACTGGTATG
CGATCCCGATCTCGTTTTGTTTTTAACTTAGAAAAGCCGAGAGGATTTCT
TTTGAGAGTAATTTTTCGAAACTCCTTTTCAACAGAAAATAGACTGTAAA
AATCATTCTTTCTTTCTAATAGGGAGATTTTTTTCATTTTTTTTTCAAAC
TTTAGGGAATCCGAACATAAACCCACTTCCTCGCTCACTTAGACACGTTC
CAATCATCTGAATAACTTTAATTCTTTAAATTCTTATGTTTTACTCTCTA
GGTTGGAATTGTTGGTCGAACAGGGGCTGGAAAATCTTCAATCACTTTAG
CCTTATTCCGTATCATTGAAGCATCTACAGGCTATATTTCCATTGATGGT
GTCAAAATATCAAATGTCGCTTTACAAGAGTTGCGCTCCAAGATCAGCAT
TATTCCTCAGGTATTGGCGACCAACTTCTTATGTGAAAATAATATTATAA
GATTTATTGATTGTCTTTTCTAGAACTATGACATCTTTAGATAGTTTTGG
TATTTGAAAAATTGTTGTAGATGGCTTTTCAAAGTATACACCAGTTCCAT
TTTTCGAATCATTATTCAGACAAGGATCTGGCCCTTTCTAGTGCACACTA
AGGTCGATACAGTTGGTAGAAAATGAAACTCTACACTACTACTCAAATTT
CTGCTCCAAACTTGGTGAAACAATAGATTTTTTTCTATCTCCTTTAGGAT
CCAGTCTTGTTTTCGGGGTCTATCCGCTTTAACGTTGATCCGTTTCAACG
GCATACCGATGAACAAATTTGGAACACTTTGGAAATTTCTCGTTTGAAGA
AATTTGTTTCTACACTTTCTGGTGGATTGGATTCTGAAGTTCAAGAAGGC
GGTGATAATTTGAGGTTTAATTATTTTCCAGTATTTGTACAAAATTCAAA
TGACCCAGTCATGAGATACTTAAATAACTATTGAATGTCGTGCTTAATTG
TTGTGAAAAGAAAAGATTATAAAAACAATTAATGATTTACCTTTTTCTGC
TGAGAAAATATTTTTCAATCGATGATCTTCGATCCGTCAACTTTTTAATA
CTCGCTAATCTTCTCATAGTGTCGGGCAACGTCAATTAATTTGTCTTGCA
AGAGCTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034123	XLOC_034123	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_239	supercontig	scaffold_239:74447..77803 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20877	1.20412	0.163679	0.0979122	0.169859	0.223709	0	0.70305	1.23565	1.17417	2.77178	1.25114	0.555711	1.00113	0.883086	0.697288	1.06923	1.28112	0.470336	0.584914	1.07082	1.20991	1.2021	1.5034	0.261127	0.357184	0	0.092636	0	0.471958

Blast

[Close]

BLAST of TCONS_00054069 vs. Swiss-Prot (Human)
Match: MRP1 (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3)

HSP 1 Score: 333.569 bits (854), Expect = 3.448e-103
Identity = 168/351 (47.86%), Postives = 243/351 (69.23%), Query Frame = 1

Query:    1 FLINAMGLVGVVYVVSFATPYVMAFFFPXXXXXXXXXXXXXKSSRQLKRIISINQSPIFNHFMESINGASTIRAFGKVDEFIDENHRRIDKLQSAYLTSVACDRWMILNVKMLGNFVAFFAALFCILEKGKISPGILGLCVSYAIQMTQSLISLVRSSNGLEVNLVSIERINDYISKPRETDMMIEESKKILPDWPQHGEISLVNYSVRYRPSLPLVLNNINITIKPKEKVGIVGRTGAGKSSITLALFRIIEASTGYISIDGVKISNVALQELRSKISIIPQDPVLFSGSIRFNVDPFQRHTDEQIWNTLEISRLKKFVSTLSGGLDSEVQEGGDNLSVGQRQLICLARA 1053
            F+ +   ++G   V+  ATP       P+ ++Y  VQR YV SSRQLKR+ S+++SP+++HF E++ G S IRAF + + FI ++  ++D+ Q AY  S+  +RW+ + ++ +GN +  FAALF ++ +  +S G++GL VSY++Q+T  L  LVR S+ +E N+V++ER+ +Y    +E    I+E+      WPQ G +   NY +RYR  L  VL +IN+TI   EKVGIVGRTGAGKSS+TL LFRI E++ G I IDG+ I+ + L +LR KI+IIPQDPVLFSGS+R N+DPF +++DE++W +LE++ LK FVS L   LD E  EGG+NLSVGQRQL+CLARA
Sbjct: 1094 FMGSLFNVIGACIVILLATPIAAIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPP-SSWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1443

The following BLAST results are available for this feature:

BLAST of TCONS_00054069 vs. Swiss-Prot (Human)

BLAST of TCONS_00054069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MRP1	3.448e-103	47.86	Multidrug resistance-associated protein 1 OS=Homo ...	[more]

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TCONS_00054069 (transcript) - C. hemisphaerica