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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054063 ID=TCONS_00054063|Name=TCONS_00054063|organism=Clytia hemisphaerica|type=transcript|length=626bp
GCCAGAATGATAAAGGGATAAATCGTTttcttcatttcaaattttgggaC
TCCCTTTTGGAGGTTTCATTTCCCttgtgaaaaaatataaaatattttga
atagaGAAATTATTATATCGGagaattttcactatttttgtaTAATGGAG
ACCATCGATATTgaagaaattaacaaaaaacacCATATCTCCTTAGataa
ttcCATCCTCGAGAAGTTCGCACCGATTCCAGAGAAGGTCCCGGAatgga
aaaaagaaatcattaaacgaaaaaatgaaaagctTTTGCAAGACGCAATC
GACGAAGCAATAGCACAGAAAGATCCATACGCTGGAGTTCCACAATGGAA
GAAAGAACTTCTGATCAAGCGAGATAATGAAAAAGCGCAGCATAAAGAAC
GACTTTCCGTTGAACAGAAAGTAAAGGAGGAGGTTACCAAGAAATTTGAA
ACCAAACCAGAATGGAAAAAAGATCTGATCTTAAAACGTCGTATTAGTCA
AGAATCCCCACGACAAATGCAAACTTGAAATTCGTTATaattattttgtg
tttttagtCTTTGTGTGATGTAAAATATGAGTTTACTTTGATTATTTCAT
TTAGGGACAATATACTTATGTTTTCA Run BLAST on NCBI transcript from alignment at scaffold_239:43489..47109- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054063 ID=TCONS_00054063|Name=TCONS_00054063|organism=Clytia hemisphaerica|type=transcript|length=3621bp|location=Sequence derived from alignment at scaffold_239:43489..47109- (Clytia hemisphaerica)
GCCAGAATGATAAAGGGATAAATCGTTTTCTTCATTTCAAATTTTGGGAC
TCCCTTTTGGAGGTTTCATTTCCCTTGTGAAAAAATATAAAATATTTTGA
ATAGAGAAATTATTATATCGGAGAATTTTCACTATTTTTGTATAATGGAG
ACCATCGATATTGAAGAAATTAACAAAAAACACCATATCTCCTTAGGTAT
GTAAGAATATTTGTATCATCGCGAGGAAGAACTGTGTGGAAAGTGATTAG
AAAATTAGTCGATATAACCAACTAGATGTTAACACTGATACTACTCTAAG
GTCCCAAATAAACATTAATTAATTTTCGAAAAGTTTTCAGACCCCTGTTC
TTATTAGGACCCTCCCTTGTTTATTTATTTTTGAAAATATTTTCAGTTAT
CACTGAATTGTTTTAAATAGCCTGTTTTTGGCTTGTAATTGCCTTCTTTT
GAGGGTTTTTGGAGGTATAATTTTGGATTCCCCTTTTATTGAAGAATTTA
TCGCTTGCTACAGTAGCAATACTTTGGCCAGGTTTTATGAGCGAGTGTAC
CATCCCATGGTCTCAAGCAGATTTCAATTGCATATAATAAAGTTCAAGTA
AATGTGTCAATTGCTAGGTTTGAATTATTTTTTTTTTTCAGATAATTCCA
TCCTCGAGAAGTTCGCACCGATTCCAGAGAAGGTCCCGGAATGGAAAAAA
GAAATCATTAAACGAAAAAATGAAAAGCTTTTGGTAAGATGGATTTATAT
TTAAACAGCTTTTAGGCGTTAATCTTTCCAATAGAAAGTTAAGGTATATC
TCATAACCATAGGAAATCACCCGGGGGTACTTAGGCAAATGGAGGGTACA
GTATGTGCTGCCCTTAAGAGTACCTTTTTTGGATTTGCAAAGTCCCGCTA
AGGGTCGGAAAAATCAGAAAATCAAATTTCAGTCCCACTAAGGGTAGGAG
AAATAGGAAAATTTCAACTTTTTACCTCCAGAAAGATAGAAATTTGGTCA
AATTGTTCAATTTTGTCCCGGTAAAATTTTCAAATTTTCCTTTTTTTCTC
GTTTTTAGTCCCGGTAAGGGTCCGAGGGTCGAAAGTTGAGTGGCACCCCC
CGTCAGCTCGCAACCCTAGTACCCCCCCGGGACCCCCTTCTCACAGCAGA
CCCACTGGGACCCCTTCCCACTGGAAAAATTGTCTTAATTTTCCTCCCCC
ATGGAAAATTATCCTCCAATTTTTGTCCCCAGTGAAAATAACCAAATAAA
CCTGTCCTCACTGCAAAATATTTATTCTCTTTTCCCATCCTCACTGAACT
TTCTGACTTAAAAACAAAAGAGTTGAAATCCCCAGCCCATCAAGTTTCAG
TTCGTTATTTTTACCCCCACTGGTTGTAAAAATCCTACCGGGTCTGTGAG
AAAGAGGTGTAGGAAAACACACTCAGCTCTCATTACACAATGGAAAAAAA
CTTGAAAGAGCATTGCAATCTCGATAATATTAAGGATCTCTTTTGAGCTT
CTAGCTAGATAAACAATAACAATGACATCCCCATCCATTGAAAATAGTTA
ACTTACTATCTCCTGGCATATAACTCCTTCCATTTCCGATTGACTAAAAA
ACTCTAGTCATCAATGTTTATTGGGCTTTCTTTAAAATGCAAGCTGTGAT
CTTAAAAGCATGTTAATCTTTTTTGTGCTGACTGTCAGCAATAAGTAGCA
AGCAGGTAATGATGAAGAGCTTGGACTCTGTCAAATGTGTTTTGGTCAAT
ACAAATCTTGAAAATCACTCGTATACCTACTTCCACTCCAAACTCTCTAT
AGAACATTCCCTTCTCACAGACCCGGTGCGATTTTATCAGCCAGTTGGGG
TAAAAGTAACGGACCAATACTCGATGGGGATTGATATTCCCATGTTTTTA
TGGCCGGGGATTTGAATTCCATCGTTTTCTAGCCAGAAGAATTCAGTGGA
GATGGTGAAAATAGTACTTAGTATTTTACTTTGAGGATTTGTTTATCTGA
TTATTTTCAACGAGGACAAAAATTAGAGTATAATTTTCCACTGGGGACGA
TATTTTGGCCAATTTTCCCAGTAGGACGGGTCCCCAGTGGGTCTGTGAGA
AGGGGGTGTTATAGACAAAGAATTAATTCTAAACCTCTATTCCTTCATAA
ACTACCTTTACTTCTCATAGGTATCTAGTAAATGGGGTTCAGAATAAACT
GGGAGGGGATTTTAAAACCGTTGGGTCGTTTATTAGGCGCTAGAGGTAAA
TGAGCGACGTTGGGGCGTATTTGTTGATAACTTTAACCCTTTGCGTTCAG
GGGTTACAAGCAGTGCTCTTGCATGTAAATGGTTTTCTCACATAGAAAGT
TAGTCGATTTGCATCCAAATATACATTCATCCCCTTTTAATTGATTTAAG
GATGCTTAAGGGAAGTAATCAATTTATTCCGCAATAAAAATACCTTTATT
GTTACCATATCAAATTCAAGTTAGCATGTAGTTACACTGCGTTTTTTATG
AGGGAAGGTCAAAAAACATTATGAATATAGATCTATAAAGCCCGAAGGGC
TAGATGACATGCTTTGTTTGAAAGGTGTGCCTTGGTTTGCGGTAGGAAGT
CTTTCCGAGGTCACGTGATATTACAATAGAATTTCAGCGCTTGACCAATC
AGAAGCTTCGCGACTGTTCGAAAACAATAGCAACAATACTTTTTGCGATT
TCAATTTTTTTTGCTTGGAAAAGTTTGACACCCCATCTAGCACTTCGGGC
TTTACAGAAATCTATGATTATGAAAGGAACTATAAAAACAATCTTGTTGA
TACTAACTTTTGTGCCATAAATGGTAGTGTGACCAGTGGCCGATTTTTGG
TTGGTGGTGTCGAAGGACACCAGAACGCTTAAAAGAACCCATCGTCGCTT
TTTCGGCGCATCTTACCCTTTTTCACCACACAAACAGTAATATTCCAGCT
GGCACACAACGTTGTTACAACGTTCATCTAACGTTATATGGACGTTGTGA
ACATTAGATGAACGTTGAAACGACGTTGTGTGCCAGCTGGGATNNNNNNN
NNNNNNNNNNTGGACGTTGTGAACATTAGATGAACGTTGAAACGATGTTG
TGTGCCAGCTGGGATTTTAGTCAAGGGGATCAAATCCTCACATTCTAATA
CCCGTTATACTATACTACTTTATACTATCACACCGGAAAAATTAGCACAT
TTGAGGCAGAGGTTCAAAGGTTAATCTAAACGCACTAAAGGAATCTTAAA
CGTTAAAAGACATTGTCATTCTGTCATTTTCAGCAAGACGCAATCGACGA
AGCAATAGCACAGAAAGATCCATACGCTGGAGTTCCACAATGGAAGAAAG
AACTTCTGATCAAGCGAGATAATGAAAAAGCGCAGCATAAAGAACGACTT
TCCGTTGAACAGAAAGTAAAGGAGGAGGTTACCAAGAAATTTGAAACCAA
ACCAGAATGGAAAAAAGATCTGATCTTAAAACGTCGTATTAGTCAAGAAT
CCCCACGACAAATGCAAACTTGAAATTCGTTATAATTATTTTGTGTTTTT
AGTCTTTGTGTGATGTAAAATATGAGTTTACTTTGATTATTTCATTTAGG
GACAATATACTTATGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054063-exon-scaffold_239-1575043694:46914..47109 | TCONS_00054063-exon-scaffold_239-1575043694:46914..47109 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1575043694:46377..46468 | TCONS_00054063-exon-scaffold_239-1575043694:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1575043694:43489..43826 | TCONS_00054063-exon-scaffold_239-1575043694:43489..43826 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1510915933:46914..47109 | TCONS_00054063-exon-scaffold_239-1510915933:46914..47109 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1510915933:46377..46468 | TCONS_00054063-exon-scaffold_239-1510915933:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1510915933:43489..43826 | TCONS_00054063-exon-scaffold_239-1510915933:43489..43826 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1491911889:46914..47109 | TCONS_00054063-exon-scaffold_239-1491911889:46914..47109 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1491911889:46377..46468 | TCONS_00054063-exon-scaffold_239-1491911889:46377..46468 | Clytia hemisphaerica | exon |
| TCONS_00054063-exon-scaffold_239-1491911889:43489..43826 | TCONS_00054063-exon-scaffold_239-1491911889:43489..43826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:43489..47109 - |
Blast
The following BLAST results are available for this feature:
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