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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054061 ID=TCONS_00054061|Name=TCONS_00054061|organism=Clytia hemisphaerica|type=transcript|length=816bp
tttctttttagaatGAATTACAACAATAACAAAGTACTATAGCAAATCAT
GATCATTATTATTAATCTTTTATTACTTTCACTGGCACAATCTTTTGTTA
ATGGCAGTAGTCGGACAGTCACTGCTAAAGAAGATGGAGATGCTGTTTTA
GAATGGGACATTTCAAGATACACTAGCGCTGATAAATTTGAAATATATTA
TAATAAAGATACAAACTTAGCTACTATTCAGCAAAGTGGTGCAGCACAAG
TTGCTGATGGTGGAACTAATAAATATGGAAAGAGACTACAAGTTGGCAAA
GTTGGGGATCGTCTTCgaataactattaaaaaattCCGGAGCTCTGATGC
AGGAACTTATGAAGTGGATGTTGATATGGGACGGGGGAAACCTTCTCAAG
TACTACAAAAATTGATATTAGAATCCGAAGATTCGCCAAATTCTTCTTAT
TTGGGTTCAGGTATTTCCTCCTCCACTGGAATCATCATTGGAGTTGTGGT
TGGAATTGTCGTTCTGGCGATCCTTATTGCCCTATGCTGTTATTGTTACA
GGAAAAACAgaGATCCAGATGATCCAGAGAGTGGAACCAGACTGGCGGCA
TTCAATACTGGAAGGTGAACCCTTTTCTCTCTTGTCGTTAAAACACCTTC
AAAACATCCATGACACCTTTCACCAGATCGGTCCAAAATTCAATTGTTTG
TTGAAAAACAATAAAGATGATATctattttgtgtttgttttgacactttc
acaCACATGCATGCATTTCAATTGTGTTGATCAGATATTGTGGATAGACT
TGATGGAGAGTTTAAG Run BLAST on NCBI transcript from alignment at scaffold_239:34206..36087- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054061 ID=TCONS_00054061|Name=TCONS_00054061|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_239:34206..36087- (Clytia hemisphaerica)
TTTCTTTTTAGAATGAATTACAACAATAACAAAGTACTATAGCAAATCAT
GATCATTATTATTAATCTTTTATTACTTTCACTGGCACAATCTTTTGGTA
AGGTACCATTTTAAATTCAATCTTGAATTTATTATTTATAAAATTATTCA
AAAATAGTCTCTAGCAATGAATATGATGTAAGTTCCAATTGCAGAAATTC
TGATACCATGAAGATAATTTTTCTATTAAACAAAGTTCCAATAAGATAAA
CCTTATCGGGGAAAACTTCGTCGGGGAAAATTTTCGTCAGGGAAAATATT
CGTCACTTGCTGGTTTTGGTAAACGCATTAAGGCCGGGGAAAATTTTCGT
CGGGGAAAAATATTTGTCACTTGGCCGAAATTTCGTCACTTTTCCCCGAC
GAAGTTTTCCCCGATAAGATCCCTGAAGGTATTATAACCATAGGTTGGTT
TCCAAGTTGTGAATTTATGAAAATGTTTTGTTATAGTTAATGGCAGTAGT
CGGACAGTCACTGCTAAAGAAGATGGAGATGCTGTTTTAGAATGGGACAT
TTCAAGATACACTAGCGCTGATAAATTTGAAATATATTATAATAAAGATA
CAAACTTAGCTACTATTCAGCAAAGTGGTGCAGCACAAGTTGCTGATGGT
GGAACTAATAAATATGGAAAGAGACTACAAGTTGGCAAAGTTGGGGATCG
TCTTCGAATAACTATTAAAAAATTCCGGAGCTCTGATGCAGGAACTTATG
AAGTGGATGTTGATATGGGACGGGGGAAACCTTCTCAAGTACTACAAAAA
TTGATATTAGAATCCGAAGGTAAGGACTGGTTACTTAGTTTCCGTGTTAA
TTTTTAGAGAGATATTGAGTTATACCTATTAAGGGAACTAATGTTGGTGA
TTAGCAAAAATACCGAAAAATATATTAATATATTTAATAAGAACTTATTT
TGACATGGCAATTTTTGAAAATTTCTGTAAGAACTGAACTATCTACCAAA
TTCACTAAAATTATTGGCTTGAGGAATTTGTTTTAAAATTGTTTGTTCTG
GAGGCATTTGTAATTGTTTTGAAAATTAATTTACACTAATTGATAATAGT
TGTTATTCTTACCTTTAAATTTACTGTAATGTTTTTATTTTGTTTTGTGA
AAATCATTCAGATTATTTTTTAAACACTTCCAACCATTTTATTTTGTTTA
ATTTTTCCTGATAATTTTTTTTACTAATGCACAAACACCTTAAGATTTTT
TCGTTTTCTTTTATTTACAATTTGTAGATTCGCCAAATTCTTCTTATTTG
GGTTCAGGTATTTCCTCCTCCACTGGAATCATCATTGGAGTTGTGGTTGG
AATTGTCGTTCTGGCGATCCTTATTGCCCTATGCTGTTATTGTTACAGGA
AAAACAGTAAGTTGCCGCTGGTATAAAAGGGTTGATGAAATTGTTTTTCC
ACCTATTTTCTATCAATAAATAAAACTGTTAATCGGGAGAATATTTAACT
GTTGTAGTGCCATAATTTTGGATTTTTGATACCTCAAGGAAAGTCTAATT
AGACTCACAAAATGGTTGGTAGGTCAAATTACTTGAAATTTTACTAATTT
CAATCTATTGTTTTCTTTTGTTTAGGAGATCCAGATGATCCAGAGAGTGG
AACCAGACTGGCGGCATTCAATACTGGAAGGTGAACCCTTTTCTCTCTTG
TCGTTAAAACACCTTCAAAACATCCATGACACCTTTCACCAGATCGGTCC
AAAATTCAATTGTTTGTTGAAAAACAATAAAGATGATATCTATTTTGTGT
TTGTTTTGACACTTTCACACACATGCATGCATTTCAATTGTGTTGATCAG
ATATTGTGGATAGACTTGATGGAGAGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054061-exon-scaffold_239-1575043694:35991..36087 | TCONS_00054061-exon-scaffold_239-1575043694:35991..36087 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1575043694:35269..35601 | TCONS_00054061-exon-scaffold_239-1575043694:35269..35601 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1575043694:34682..34810 | TCONS_00054061-exon-scaffold_239-1575043694:34682..34810 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1575043694:34206..34462 | TCONS_00054061-exon-scaffold_239-1575043694:34206..34462 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1510915933:35991..36087 | TCONS_00054061-exon-scaffold_239-1510915933:35991..36087 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1510915933:35269..35601 | TCONS_00054061-exon-scaffold_239-1510915933:35269..35601 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1510915933:34682..34810 | TCONS_00054061-exon-scaffold_239-1510915933:34682..34810 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1510915933:34206..34462 | TCONS_00054061-exon-scaffold_239-1510915933:34206..34462 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1491911889:35991..36087 | TCONS_00054061-exon-scaffold_239-1491911889:35991..36087 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1491911889:35269..35601 | TCONS_00054061-exon-scaffold_239-1491911889:35269..35601 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1491911889:34682..34810 | TCONS_00054061-exon-scaffold_239-1491911889:34682..34810 | Clytia hemisphaerica | exon |
| TCONS_00054061-exon-scaffold_239-1491911889:34206..34462 | TCONS_00054061-exon-scaffold_239-1491911889:34206..34462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_239 | supercontig | scaffold_239:34206..36087 - |
Blast
The following BLAST results are available for this feature:
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