TCONS_00054048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054048
Unique NameTCONS_00054048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054048 ID=TCONS_00054048|Name=TCONS_00054048|organism=Clytia hemisphaerica|type=transcript|length=590bp
gttcaactcaaaattatagtccttggctgatacttcatatattattcaga
aaatgaagtcaaaatcgcTACCTTTTGACCATGTCGGCAAATGCCGACaa
ctggcaaataggtcgaaccttcttttttcccgtggcaaataggtcgaacc
ttttttttttcccGCGGCAAATAGGTCAGACcttaaaaaaaacgacgggc
agttaaagggttaatatGATTCTTGAACAACTCAGACCCTGGTACGAGAA
TCAGTTATCGGATGAGCAAAATGGCTTTAGAAAGGATCGTGGAACAACAG
ATGGTATCTACACAGTCAAACGAGTTCaccaaatttcaaacaaaaagtcT
GAACCTACATTTCTTCTATTTGTTGATCTAAATGCAGCTTTCGACCACAT
ACCACGAAGCTGGCTCTTTGAAAGTATAAAACTGCGCTTCCCTGATAGAT
CCATCCCTCGAACTTTCGAAATTCTTCAAACCTTGTACGAAAATACCACC
CTCACCTACGACGATGCTATGATATCCTTCAAAACGACTTCCGGTGTGCG
TCAAGGGGGACCCGAAAGTccctttttgttcaatttataN
Run BLAST on NCBI

protein sequence of TCONS_00054048-protein

>TCONS_00054048-protein ID=TCONS_00054048-protein|Name=TCONS_00054048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MILEQLRPWYENQLSDEQNGFRKDRGTTDGIYTVKRVHQISNKKSEPTFL
LFVDLNAAFDHIPRSWLFESIKLRFPDRSIPRTFEILQTLYENTTLTYDD
AMISFKTTSGVRQGGPESPFLFNLX
Run BLAST on NCBI

transcript from alignment at scaffold_238:129271..129860

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054048 ID=TCONS_00054048|Name=TCONS_00054048|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_238:129271..129860 (Clytia hemisphaerica)
NtataaattgaacaaaaagggACTTTCGGGTCCCCCTTGACGCACACCGG
AAGTCGTTTTGAAGGATATCATAGCATCGTCGTAGGTGAGGGTGGTATTT
TCGTACAAGGTTTGAAGAATTTCGAAAGTTCGAGGGATGGATCTATCAGG
GAAGCGCAGTTTTATACTTTCAAAGAGCCAGCTTCGTGGTATGTGGTCGA
AAGCTGCATTTAGATCAACAAATAGAAGAAATGTAGGTTCAgactttttg
tttgaaatttggtGAACTCGTTTGACTGTGTAGATACCATCTGTTGTTCC
ACGATCCTTTCTAAAGCCATTTTGCTCATCCGATAACTGATTCTCGTACC
AGGGTCTGAGTTGTTCAAGAATCatattaaccctttaactgcccgtcgtt
ttttttaagGTCTGACCTATTTGCCGCgggaaaaaaaaaaggttcgacct
atttgccacgggaaaaaagaaggttcgacctatttgccagttGTCGGCAT
TTGCCGACATGGTCAAAAGGTAgcgattttgacttcattttctgaataat
atatgaagtatcagccaaggactataattttgagttgaac

Coding sequence (CDS) from alignment at scaffold_238:129271..129860

>TCONS_00054048 ID=TCONS_00054048|Name=TCONS_00054048|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_238:129271..129860 (Clytia hemisphaerica)
NtataaattgaacaaaaagggACTTTCGGGTCCCCCTTGACGCACACCGG
AAGTCGTTTTGAAGGATATCATAGCATCGTCGTAGGTGAGGGTGGTATTT
TCGTACAAGGTTTGAAGAATTTCGAAAGTTCGAGGGATGGATCTATCAGG
GAAGCGCAGTTTTATACTTTCAAAGAGCCAGCTTCGTGGTATGTGGTCGA
AAGCTGCATTTAGATCAACAAATAGAAGAAATGTAGGTTCAgactttttg
tttgaaatttggtGAACTCGTTTGACTGTGTAGATACCATCTGTTGTTCC
ACGATCCTTTCTAAAGCCATTTTGCTCATCCGATAACTGATTCTCGTACC
AGGGTCTGAGTTGTTCAAGAATCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034117XLOC_034117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054048-exon-scaffold_238-1491911889:129271..129860TCONS_00054048-exon-scaffold_238-1491911889:129271..129860Clytia hemisphaericaexon
TCONS_00054048-exon-scaffold_238-1510915933:129271..129860TCONS_00054048-exon-scaffold_238-1510915933:129271..129860Clytia hemisphaericaexon
TCONS_00054048-exon-scaffold_238-1575043694:129271..129860TCONS_00054048-exon-scaffold_238-1575043694:129271..129860Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054048-proteinTCONS_00054048-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:129271..129860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28063	1.77546	3.79662	3.50861	14.8648	12.4404	8.54876	11.1491	3.46116	4.41945	2.46025	3.98942	3.51188	4.41154	2.21377	3.52538	3.1579	3.83262	4.08855	5.13853	5.83003	5.38388	5.7798	2.16444	4.43553	3.78347	9.20743	10.2009	3.18799	3.39603
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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