TCONS_00054032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054032
Unique NameTCONS_00054032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054032 ID=TCONS_00054032|Name=TCONS_00054032|organism=Clytia hemisphaerica|type=transcript|length=2069bp
GGATAATTTAGTTTgtatttctctttctctttcagaaaaatatttatgtG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGgatgtG
CATTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAA
CTTCATGAAAAAAAGACACTTCCAGGGTGTGGCCATGCAATGCAAGTCAA
ACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAA
TGTTATCCaagaaattaaatgaagaagaccTAAGAGTTATGTTTTCCCCC
TTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAG
TAAAgGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATG
CTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGGGATGCTCTTCACCT
CTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTAT
GCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAAT
TTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAA
AATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACC
TGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATA
ACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaac
cagcaacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTC
TTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCA
CCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCT
CTTCAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACT
AAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAG
TTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCA
CTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCNATTT
GGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAA
TAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTG
TTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAAC
ACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaacca
gcaacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTCTT
CACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACC
ACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCT
TCAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACTAA
ACAATATGGCTAATCTTGCAACTGCACTTCCACAAGCGTATCAAAATTTA
CAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTCAAA
TCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGATGC
AGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATTGAC
AAACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAACCA
ACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGGTT
CCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaacca
TATTAAAAAAACATGCATG
Run BLAST on NCBI

protein sequence of TCONS_00054032-protein

>TCONS_00054032-protein ID=TCONS_00054032-protein|Name=TCONS_00054032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MTIDMTASTNNIGMAKEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDL
TVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPA
VSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKG
CSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQA
MATNLVGLGMTMSQFGMPGGLINNAYPNVGQNNAYQQLLTQMAMPNTPVP
AQLVSNPGFANMNNNTLPNGVSAALVAAMANQQQQQLQGLTQTQQANSSL
FSSSIGQQLPTSSFTTSQSATNPLANNGLSALQTNISGANSIANLGGLNN
MANLASMTGLSSTQVAANPAVVAAAAAASGPLQSLPNIPTSNVNRAXLEC
LEA
Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20762-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054032 ID=TCONS_00054032|Name=TCONS_00054032|organism=Clytia hemisphaerica|type=transcript|length=6648bp|location=Sequence derived from alignment at scaffold_238:14115..20762- (Clytia hemisphaerica)
GGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAGAAAAATATTTATGTG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGGTTATT
ATTGGAATTACTATATAAAATTTTGGCCAATTTAATCTAATTAATGTGTT
GCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAATGATATCCTGGCTGG
ATGACAACACTGCCAACGCACTGAATTGCCTTGTGATTTTATCCGGTGCT
GAATAAAAGTATTTAAATTTCACCAGACAAAATTGTGTTACAGTTTTTTA
GGCCGGCCACACNAGCGTTTGGAAATTTTTCCCGCTTACATCGGAATTAT
TAGTCAGGTAAAAAAGTTCAGACTGTCAACAAAGTGTTGAAAAACTTTAT
ACTGTAAAACTTCGTGGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAG
AAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGT
AGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACAA
ATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGA
CAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCA
ATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGTC
AACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAATTTAA
TCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAA
TGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCCTTGTG
ATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAAAATTG
TGTTACAGTTTTTTAGGCCGGCCACACCAATCACCACAAATAACTTGTGT
TGTGTCGTCTGACCATCTGATAATTTTTCTTAATTTTCCAATTATTTTGA
GTCAAGAAGTTGCAAAATTGTCGGAATTTTATCCAATTCCATCCCACCCG
CAATCTTTACATCAATCGCACGTTTCATTGTTTTGGGCCATTCCAGAAAA
TTTTTGTTACCCCACGTCAGACGACGTGCATTTTTTAATTTTTTCTAGCC
TCAGAAATTTTTTTTTTTCCAGTGGTGGTCGGAAATTCCGATAAAAATCC
ATGTACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGCCTTTTTT
TAATTCAATTGCCTTGGAAATTCATACATTTTCTTCTCTCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCACCTTGGAA
ATTTCGAATTTTGGTGAAAACTTTTGCCCTCGGAAATCCTGTGTCGTCCG
CCCCCCTGTTACAGACAAATTCTGGAATGGCCCTTTACGGAAGAATTTTA
TTTATAAATATAAACAGAGATAATATCCAATCCTTTCCGTGAACGTGTTA
TTATCTCCTTAGTCATAAAACAGAGATACCATATTTCAAAAAAAGAGGGG
CTGTATCGTGATCACATGAAATCCAAGAAAGGGCCACAGTTGACGGACCG
TCTACATAAACAAGAAGACAGTGGGCCGTTTATTTTCAATTTTCGATAGA
TTTGATTTCTGCCTGATTGATAGTTTGAAAATCCATTTTTCCGACGTTAT
TTTCACTGACCGAATCTGACCGAATGACTCCATTTTTATTGCCTAAAACG
ACGCGAACACAAGTTATTTGCGATTCTGGCCTTACACCAATTCTTGACAC
CAGACTTTTTTGTTACTGTTTGCGCGCTCATTGGATTGATCCACATCCAT
GTGCCAGGTTTAGATTGTCCAGAGATAAAAAGTTTCATCCTTCAACACTT
GGCATTAGGATAAGCCTGGTGCTTCAGTCTGTTGTGTTGGCAGGATTGTC
TATCATGCAAAATCATTTTGCCAAATTGGTTGCAGTCAGATTGCATAGGA
AAATATGCAAAACCTATGCAAAGAGAATAATCAGAATATTATTAGCATTA
AAGAAAAGCAACAACCTAAACTCAACTGCTTGACTTTTACCCTTCTTGAC
AAAGAAATAATCAGAAAAAAGTGTCACAAGAGCCTTGGGTCTTGAGAACT
GAAAATTGTTCAGTAATTTTATGAATTTCACTGCTGGTTTTTCTTCTTTC
ATATCTATAATTTATTAAATTAAAGTATTTTTTTTTTCAGGATGTGCATT
TTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTC
ATGAAAAAAAGACACTTCCAGGGGTAAGAATTCTGCTCAGGTTACAGTAA
TATTGTCCATTATTTTAAGATTGATAATATTATAAGATATATAATATTAG
TTTGTACACACTTTTGAATCTTGAAAGGTATATACAGTGACAATATTCAT
TTTACTCAAGCAGGTTCTACTCTAACTATATCGACTTTCTTACTTATCTT
CTAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAA
CTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGAA
GAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGAC
AGTTTTGAAAAATCCTGATGGAACTAGTAAAGGTAAAATTGTTTTGTTTG
TGTCTGTTTTATTTACAAGGTTTTTTTTCAAAATGTGGTCTAATGGACCC
TGTTGGGTCCTTTATGACCCTGTCTAATGGTGGTATATCTCTGATCATTC
TAGAAAATTTAATAACATTTTTATTAACATTGTAAATGTTGAAATGATGA
ATGTCTTCTTTTTTATCTAGGTTGTTCATTCATCAAATATGCAAACAGAT
TACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAG
GTATGAATTCTTCATTGACTCACTAATTCCAACTTTTGCAATAAGTTGAT
ATACTAAATCTAGCTTTATCTTACATTTTGGTATTGAAGAAATTAGATTT
TGACTGTAGGTATTTTACTTTACCCTTTGATCAAATATGTATACATTATT
ACAATCTTTTCAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATA
CAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTA
GTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAAT
AAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTT
TAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGT
AATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAG
TGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAG
GACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATT
GGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAA
TCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTA
TGACATTGTTTGAATTTTGAATTAGATAAGATTGATTCAATAATGATTGA
AAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGTATTGGGATATG
CTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATCAA
ATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAACTA
AAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTATC
GCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAACAA
TTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGTTT
GATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATAAA
GCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTAAC
CTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAG
TTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAG
CCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAAT
AGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAAT
GTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCC
AAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATA
TGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCA
ATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACA
AGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAA
GTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGT
TTGTCTGCTCTTCAAACTAACATATCAGGTATGACATTGATTCAATAATG
ATTGAAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGCATTGGG
ATACGCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCAT
ATCAAATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGT
AACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCG
GTATCGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATA
AACAATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTC
TGTTTGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAG
ATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTG
CTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGT
TTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGC
AGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATG
TCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTAC
TCAGGAGTCGAGCAATTTGTTGGTAAGACTGTCAAACAAACAGTCTTATC
AAGTGCATAGGAAATGTGTCAAAAACTTCTTGTTTATTTTGAAGATTTAT
CATCTTTGTGTTGTTGCTTTTCATTTCTTTCTGTTTTGTCATGTTGTTTT
TATTGTATGTTATAAATTATGTGTGCACAAGAAGTTGGGAGTTGCGTGCA
AGAAGTGTGGAAATTTTAAAATATTGATTTTGCATTCAAGCTACTTTTCA
CATTTTTGTTCAGCAACTTTCATAATGTATGTCATTGTCTTATGCATTTG
ATAAGTGTTTGTCTTTGTCCTGTTTTTGTCTAATTGTATTGATGACCTTC
AATGACCATTTAAAAAAAAGGAGGGATGTGTAAATGATTTCCCTGTATAT
TTAAAGTAGATATTATTCATAGTTCTAGATGAGGGTTGATATGTATCATT
TCCATTATATTTCTGCTACTTCAACTAGCAATTCTTATTTGATCATGTGA
GAATTATGCAAACCTATACTTTCTAATGTTGACTCTTTGTAGAGCTTTAT
TCTTTAGATTTTTATGTGCTTACTTTGAATTCGGTATTTCTAAATCTTGT
TTATTTTTAATTAAAGCTGCACTTCCACAAGCGTATCAAAATTTACAAAG
GCAGAATGTCGCACAACCCCAAAAAGAAGGTTAATTGTTATTTTGTCTGT
TTTATTTTGAATGACTTTATTTTTCTATTTAAAGTTAATTGTTATTACTG
GCAAGAACCTTATTGATCATGTTGATTTTTATTTGCTTTCAGGTCCTGAT
GGTTCAAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGA
TCTGATGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCT
TCATTGACAAACCTACGTTGTTGAGCAAATGTTTTGGTAATTGTTATTTT
ATAAACACTTTATTTTTTTGTTGATCAGATGAAATTAATAGTTTGTGAAT
AGCACTCATATTTTTTCATTGTGTTACTTGTAAATTATCCTTTTTAAACT
TTAGCACATGTATCATTTTGTAACTTGCAATGTTTTGTAATGTTTACTTT
TTTTCAGGTTTTGTCAGTTTTGACAACCAACACAGTGCCAGGCAAGCTAT
TGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAGT
TGAAGCGACCAAAAGACCAAAACAAACCATATTAAAAAAACATGCATG

Coding sequence (CDS) from alignment at scaffold_238:14115..20762-

>TCONS_00054032 ID=TCONS_00054032|Name=TCONS_00054032|organism=Clytia hemisphaerica|type=CDS|length=8484bp|location=Sequence derived from alignment at scaffold_238:14115..20762- (Clytia hemisphaerica)
GAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTT
GCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGT
AGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATA
TTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAA
GGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAGAAAAGGACAA
ATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTCGGACTTGGTA
TGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAACAATGCATAT
CCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGC
AATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCG
CTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTG
GCTGCAATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAAC
ACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTAC
CTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAAT
AATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTTGTTCATTCATCAA
ATATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCT
CTCAGACTATGGAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCA
GAGACGAAAACTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAA
ATTAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAG
AAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAAAGGATGTGCA
TTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACT
TCATGAAAAAAAGACACTTCCAGGGATGACCTTACTGTGCTTCATGATAA
ATACACTGGTCAACATAAAGATGACTATTGATATGACAGCATCAACAAAT
AATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACA
AGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCAAT
ATGGTGAAATACGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAAT
ATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGC
AAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAA
GCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGC
CTGGAGGCTTAAGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATAC
AGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAG
TCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATA
AACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTT
AACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTA
ATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGT
GCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAGG
ACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTG
GTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAAT
CCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTTG
TTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATGCTATTAGAA
AGTTGCACGGCTCTCAGACTATGGAGTGTGGCCATGCAATGCAAGTCAAA
CCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAAT
GTTATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCT
TTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGT
AAAGGATGTGCATTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGC
ACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGATGACCTTACTGT
GCTTCATGATAAATACACTGGTCAACATAAAGATGACTATTGATATGACA
GCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACT
GTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTA
TATTCGATCAATATGGTGAAATACGAGCCAATTCTATTGCTAACCTTGGT
GGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTAC
TCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGG
GGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCC
NATTTGGAATGCCTGGAGGCTTAAGGATGCTCTTCACCTCTTGTTGTTAA
AATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGG
CAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCT
GGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAATAATGCATA
TCAACAACTTTTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTC
AGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAACACTTTACCA
AATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACA
ACAATTACAAGGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCA
GTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAA
AGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAA
CATATCAGGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAA
ATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGTGTGGCCATGCA
ATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATT
ATTCATTGGAATGTTATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTA
TGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCT
GATGGAACTAGTAAAGGATGTGCATTTTTAACATACTATGAGAAAGAATC
AGCCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGATGACT
ATTGATATGACAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGA
AGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAG
AACTGAAACCTATATTCGATCAATATGGTGAAATACGAGCCAATTCTATT
GCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGG
TTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAG
CAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAAT
GTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAAGGATGCTCTTCACC
TCTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTA
TGCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAA
TTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACA
AAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACAC
CTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAAT
AACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAA
CCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACAAGCAAACT
CTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTC
ACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGC
TCTTCAAACTAACATATCAGGTTGTTCATTCATCAAATATGCAAACAGAT
TACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAG
TGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGA
AGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGAAGAAG
ACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTT
TTGAAAAATCCTGATGGAACTAGTAAAGGATGTGCATTTTTAACATACTA
TGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGA
CACTTCCAGGGATGACCTTACTGTGCTTCATGATAAATACACTGGTCAAC
ATAAAGATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGGC
CAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACAT
GGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACGA
GCCAATTCTATTGCTAACCTTGGTGGACTAAACAATATGGCTAATCTTGC
AAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAG
TTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATT
CCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCTGGAGGCTTAAGG
ATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAAT
TGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATG
ACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCC
TAATGTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAA
TGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCT
AATATGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGC
TGCAATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACAC
AACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCT
ACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAA
TGGTTTGTCTGCTCTTCAAACTAACATATCAGGTTGTTCATTCATCAAAT
ATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCT
CAGACTATGGAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGA
GACGAAAACTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAAT
TAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAA
GAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAAAGGATGTGCATT
TTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTC
ATGAAAAAAAGACACTTCCAGGGATGACCTTACTGTGCTTCATGATAAAT
ACACTGGTCAACATAAAGATGACTATTGATATGACAGCATCAACAAATAA
TATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAG
TACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCAATAT
GGTGAAATACGAGCCAATTCTATTGCTAACCTTGGTGGACTAAACAATAT
GGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTCAAGTTGCAGCAA
ACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGGCCACTTCAAAGC
CTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCNATTTGGAATGCCT
GGAGGCTTAAGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATACAG
AAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTAGTC
GGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAATAAA
CAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTTTAA
CACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGTAAT
CCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAGTGC
TGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAGGAC
TTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATTGGT
CAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAATCC
ATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTTGTT
CATTCATCAAATATGCAAACAGATTACAAGCACAAAATGCTATTAGAAAG
TTGCACGGCTCTCAGACTATGGAGTGTGGCCATGCAATGCAAGTCAAACC
TGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAATGT
TATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATGTTTTCCCCCTTT
GGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAGTAA
AGGATGTGCATTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCAC
AAAATGAACTTCATGAAAAAAAGACACTTCCAGGGATGACCTTACTGTGC
TTCATGATAAATACACTGGTCAACATAAAGATGACTATTGATATGACAGC
ATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGT
TTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATA
TTCGATCAATATGGTGAAATACGAGCCAATTCTATTGCTAACCTTGGTGG
ACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAGTTCTACTC
AAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAGCCTCGGGG
CCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAATAGGGCCNA
TTTGGAATGCCTGGAGGCTTAAGGATGCTCTTCACCTCTTGTTGTTAAAA
TTGCTGATACAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCA
ACTAATTTAGTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGG
AGGCTTAATAAACAATGCATATCCTAATGTAGGACAAAATAATGCATATC
AACAACTTTTAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAG
CTTGTTAGTAATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAA
TGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAAC
AATTACAAGGACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGT
TCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAG
CGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACA
TATCAGGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAAT
GCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGTGTGGCCATGCAAT
GCAAGTCAAACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTAT
TCATTGGAATGTTATCCAAGAAATTAAATGAAGAAGACCTAAGAGTTATG
TTTTCCCCCTTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGA
TGGAACTAGTAAAGGATGTGCATTTTTAACATACTATGAGAAAGAATCAG
CCCAGCAAGCACAAAATGAACTTCATGAAAAAAAGACACTTCCAGGGATG
ACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGATGACTAT
TGATATGACAGCATCAACAAATAATATTGGTATGGCCAAAGAGCCAGAAG
CTTGTAAACTGTTTATTGGACAAGTACCCAGAACATGGACTGAAAAAGAA
CTGAAACCTATATTCGATCAATATGGTGAAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034108XLOC_034108Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054032-proteinTCONS_00054032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054032-exon-scaffold_238-1575043694:20514..20762TCONS_00054032-exon-scaffold_238-1575043694:20514..20762Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:19854..19898TCONS_00054032-exon-scaffold_238-1575043694:19854..19898Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:18240..18322TCONS_00054032-exon-scaffold_238-1575043694:18240..18322Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:17881..18058TCONS_00054032-exon-scaffold_238-1575043694:17881..18058Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:17613..17692TCONS_00054032-exon-scaffold_238-1575043694:17613..17692Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:16966..17449TCONS_00054032-exon-scaffold_238-1575043694:16966..17449Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:15985..16532TCONS_00054032-exon-scaffold_238-1575043694:15985..16532Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:15524..15577TCONS_00054032-exon-scaffold_238-1575043694:15524..15577Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:14684..14746TCONS_00054032-exon-scaffold_238-1575043694:14684..14746Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:14427..14570TCONS_00054032-exon-scaffold_238-1575043694:14427..14570Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1575043694:14115..14255TCONS_00054032-exon-scaffold_238-1575043694:14115..14255Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:20514..20762TCONS_00054032-exon-scaffold_238-1510915933:20514..20762Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:19854..19898TCONS_00054032-exon-scaffold_238-1510915933:19854..19898Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:18240..18322TCONS_00054032-exon-scaffold_238-1510915933:18240..18322Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:17881..18058TCONS_00054032-exon-scaffold_238-1510915933:17881..18058Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:17613..17692TCONS_00054032-exon-scaffold_238-1510915933:17613..17692Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:16966..17449TCONS_00054032-exon-scaffold_238-1510915933:16966..17449Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:15985..16532TCONS_00054032-exon-scaffold_238-1510915933:15985..16532Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:15524..15577TCONS_00054032-exon-scaffold_238-1510915933:15524..15577Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:14684..14746TCONS_00054032-exon-scaffold_238-1510915933:14684..14746Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:14427..14570TCONS_00054032-exon-scaffold_238-1510915933:14427..14570Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1510915933:14115..14255TCONS_00054032-exon-scaffold_238-1510915933:14115..14255Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:20514..20762TCONS_00054032-exon-scaffold_238-1491911889:20514..20762Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:19854..19898TCONS_00054032-exon-scaffold_238-1491911889:19854..19898Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:18240..18322TCONS_00054032-exon-scaffold_238-1491911889:18240..18322Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:17881..18058TCONS_00054032-exon-scaffold_238-1491911889:17881..18058Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:17613..17692TCONS_00054032-exon-scaffold_238-1491911889:17613..17692Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:16966..17449TCONS_00054032-exon-scaffold_238-1491911889:16966..17449Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:15985..16532TCONS_00054032-exon-scaffold_238-1491911889:15985..16532Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:15524..15577TCONS_00054032-exon-scaffold_238-1491911889:15524..15577Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:14684..14746TCONS_00054032-exon-scaffold_238-1491911889:14684..14746Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:14427..14570TCONS_00054032-exon-scaffold_238-1491911889:14427..14570Clytia hemisphaericaexon
TCONS_00054032-exon-scaffold_238-1491911889:14115..14255TCONS_00054032-exon-scaffold_238-1491911889:14115..14255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_238supercontigscaffold_238:14115..20762 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00054032 vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.207e-77
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3 
Query:  153 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 755
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202

HSP 2 Score: 151.369 bits (381), Expect = 2.766e-39
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 2 
Query: 1778 KEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 2053
            +EGPDG N+FIYHLP EFTD++++Q F+PFG+V+SAKVF+D+ T  SKCFGFVSFDN  SA+ AI+AMNGF +G KRLKVQLKRPKD N+PY
Sbjct:  374 REGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
The following BLAST results are available for this feature:
BLAST of TCONS_00054032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CELF31.207e-7759.70CUGBP Elav-like family member 3 OS=Homo sapiens GN... [more]
back to top