TCONS_00054032-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054032-protein
Unique NameTCONS_00054032-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054032-protein ID=TCONS_00054032-protein|Name=TCONS_00054032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MTIDMTASTNNIGMAKEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDL
TVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPA
VSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKG
CSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQA
MATNLVGLGMTMSQFGMPGGLINNAYPNVGQNNAYQQLLTQMAMPNTPVP
AQLVSNPGFANMNNNTLPNGVSAALVAAMANQQQQQLQGLTQTQQANSSL
FSSSIGQQLPTSSFTTSQSATNPLANNGLSALQTNISGANSIANLGGLNN
MANLASMTGLSSTQVAANPAVVAAAAAASGPLQSLPNIPTSNVNRAXLEC
LEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034108XLOC_034108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054032TCONS_00054032Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..204
NoneNo IPR availableGENE3D3.30.70.330coord: 105..300
e-value: 9.0E-23
score: 80.0
NoneNo IPR availableGENE3D3.30.70.330coord: 7..104
e-value: 2.4E-21
score: 75.6
IPR002343Paraneoplastic encephalomyelitis antigenPRINTSPR00961HUDSXLRNAcoord: 129..141
score: 40.0
coord: 170..187
score: 34.07
coord: 21..36
score: 26.04
coord: 114..129
score: 24.17
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 110..185
e-value: 5.1E-19
score: 79.2
coord: 22..98
e-value: 2.7E-20
score: 83.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 111..176
e-value: 3.7E-15
score: 55.4
coord: 23..88
e-value: 3.9E-15
score: 55.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 109..189
score: 16.159
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 21..102
score: 15.409
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 105..199
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 17..103

Blast
[Close]
BLAST of TCONS_00054032-protein vs. Swiss-Prot (Human)
Match: CELF3 (CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.744e-83
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 0 
Query:   16 KEPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTGQHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSETKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQAMATNLVGLGMTMSQFG 216
            KEP+A KLF+GQ+PR   EK+LKPIF+Q+G I +LTV+ DKYTG HKGCAFLTY  ++SA +AQ+ LHE+KTLPG    +QVKPA SE++ EDRKLF+GML K+  +ED+R MF PFGTI+E TVL+ PDGTSKGC+F+K+    +AQ AI  LH S+T+ G SS LVVK ADTEK++  +RMQ +AT L        QFG
Sbjct:    2 KEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFG 202
The following BLAST results are available for this feature:
BLAST of TCONS_00054032-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CELF33.744e-8359.70CUGBP Elav-like family member 3 OS=Homo sapiens GN... [more]
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