TCONS_00054031 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00054031
Unique Name	TCONS_00054031
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1521

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_238:14115..20762-

transcript sequence

>TCONS_00054031 ID=TCONS_00054031|Name=TCONS_00054031|organism=Clytia hemisphaerica|type=transcript|length=1521bp
GGATAATTTAGTTTgtatttctctttctctttcagaaaaatatttatgtG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGgatgtG
CATTTTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAA
CTTCATGAAAAAAAGACACTTCCAGGGTGTGGCCATGCAATGCAAGTCAA
ACCTGCAGTATCAGAGACGAAAACTGAAGATAGAAAATTATTCATTGGAA
TGTTATCCaagaaattaaatgaagaagaccTAAGAGTTATGTTTTCCCCC
TTTGGAACGATAGAAGAACTGACAGTTTTGAAAAATCCTGATGGAACTAG
TAAAgGTTGTTCATTCATCAAATATGCAAACAGATTACAAGCACAAAATG
CTATTAGAAAGTTGCACGGCTCTCAGACTATGGAGGGATGCTCTTCACCT
CTTGTTGTTAAAATTGCTGATACAGAAAAGGACAAATTGCAAAAACGTAT
GCAAGCTATGGCAACTAATTTAGTCGGACTTGGTATGACAATGAGCCAAT
TTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAATGTAGGACAA
AATAATGCATATCAACAACTTTTAACACAAATGGCAATGCCAAATACACC
TGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATATGAACAATA
ACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCAATGGCAaac
cagcaacaacaacaattaCAAGGACTTACTCAAACACAACAAGCAAACTC
TTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAAGTAGTTTCA
CCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGTTTGTCTGCT
CTTCAAACTAACATATCAGGAGCCAATTCTATTGCTAACCTTGGTGGACT
AAACAATATGGCTAATCTTGCAACTGCACTTCCACAAGCGTATCAAAATT
TACAAAGGCAGAATGTCGCACAACCCCAAAAAGAAGGTCCTGATGGTTCA
AATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGATCTGAT
GCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCTTCATTG
ACAAACCTACGTTGTTGAGCAAATGTTTTGgttttgtcAGTTTTGACAAC
CAACACAGTGCCAGGCAAGCTATTGAAGCAATGAATGGATTTAGTGTTGG
TTCCAAGCGGTTAAAGGTTCAGTTGAAGCGACCAaaagaccaaaacaaac
caTATTAAAAAAACATGCATG

Run BLAST on NCBI

transcript from alignment at scaffold_238:14115..20762-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00054031 ID=TCONS_00054031|Name=TCONS_00054031|organism=Clytia hemisphaerica|type=transcript|length=6648bp|location=Sequence derived from alignment at scaffold_238:14115..20762- (Clytia hemisphaerica)
GGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAGAAAAATATTTATGTG
GTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGTAGTGTAAAAAGCCAA
ATGTATTATGACTATTGATATGACAGCATCAACAAATAATATTGGTATGG
CCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGACAAGTACCCAGAACA
TGGACTGAAAAAGAACTGAAACCTATATTCGATCAATATGGTGAAATACA
TGACCTTACTGTGCTTCATGATAAATACACTGGTCAACATAAAGGTTATT
ATTGGAATTACTATATAAAATTTTGGCCAATTTAATCTAATTAATGTGTT
GCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAATGATATCCTGGCTGG
ATGACAACACTGCCAACGCACTGAATTGCCTTGTGATTTTATCCGGTGCT
GAATAAAAGTATTTAAATTTCACCAGACAAAATTGTGTTACAGTTTTTTA
GGCCGGCCACACNAGCGTTTGGAAATTTTTCCCGCTTACATCGGAATTAT
TAGTCAGGTAAAAAAGTTCAGACTGTCAACAAAGTGTTGAAAAACTTTAT
ACTGTAAAACTTCGTGGATAATTTAGTTTGTATTTCTCTTTCTCTTTCAG
AAAAATATTTATGTGGTTTGTTTAGTTGTTTGTGGAGTAGCTTATTGTGT
AGTGTAAAAAGCCAAATGTATTATGACTATTGATATGACAGCATCAACAA
ATAATATTGGTATGGCCAAAGAGCCAGAAGCTTGTAAACTGTTTATTGGA
CAAGTACCCAGAACATGGACTGAAAAAGAACTGAAACCTATATTCGATCA
ATATGGTGAAATACATGACCTTACTGTGCTTCATGATAAATACACTGGTC
AACATAAAGGTTATTATTGGAATTACTATATAAAATTTTGGCCAATTTAA
TCTAATTAATGTGTTGCACTTTCAAATTCTGTAATTCTTGTGTTGTTGAA
TGATATCCTGGCTGGATGACAACACTGCCAACGCACTGAATTGCCTTGTG
ATTTTATCCGGTGCTGAATAAAAGTATTTAAATTTCACCAGACAAAATTG
TGTTACAGTTTTTTAGGCCGGCCACACCAATCACCACAAATAACTTGTGT
TGTGTCGTCTGACCATCTGATAATTTTTCTTAATTTTCCAATTATTTTGA
GTCAAGAAGTTGCAAAATTGTCGGAATTTTATCCAATTCCATCCCACCCG
CAATCTTTACATCAATCGCACGTTTCATTGTTTTGGGCCATTCCAGAAAA
TTTTTGTTACCCCACGTCAGACGACGTGCATTTTTTAATTTTTTCTAGCC
TCAGAAATTTTTTTTTTTCCAGTGGTGGTCGGAAATTCCGATAAAAATCC
ATGTACTTTTGCAAAATGCATCGGAAATTCCACTCTTTTTTGCCTTTTTT
TAATTCAATTGCCTTGGAAATTCATACATTTTCTTCTCTCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTCACCTTGGAA
ATTTCGAATTTTGGTGAAAACTTTTGCCCTCGGAAATCCTGTGTCGTCCG
CCCCCCTGTTACAGACAAATTCTGGAATGGCCCTTTACGGAAGAATTTTA
TTTATAAATATAAACAGAGATAATATCCAATCCTTTCCGTGAACGTGTTA
TTATCTCCTTAGTCATAAAACAGAGATACCATATTTCAAAAAAAGAGGGG
CTGTATCGTGATCACATGAAATCCAAGAAAGGGCCACAGTTGACGGACCG
TCTACATAAACAAGAAGACAGTGGGCCGTTTATTTTCAATTTTCGATAGA
TTTGATTTCTGCCTGATTGATAGTTTGAAAATCCATTTTTCCGACGTTAT
TTTCACTGACCGAATCTGACCGAATGACTCCATTTTTATTGCCTAAAACG
ACGCGAACACAAGTTATTTGCGATTCTGGCCTTACACCAATTCTTGACAC
CAGACTTTTTTGTTACTGTTTGCGCGCTCATTGGATTGATCCACATCCAT
GTGCCAGGTTTAGATTGTCCAGAGATAAAAAGTTTCATCCTTCAACACTT
GGCATTAGGATAAGCCTGGTGCTTCAGTCTGTTGTGTTGGCAGGATTGTC
TATCATGCAAAATCATTTTGCCAAATTGGTTGCAGTCAGATTGCATAGGA
AAATATGCAAAACCTATGCAAAGAGAATAATCAGAATATTATTAGCATTA
AAGAAAAGCAACAACCTAAACTCAACTGCTTGACTTTTACCCTTCTTGAC
AAAGAAATAATCAGAAAAAAGTGTCACAAGAGCCTTGGGTCTTGAGAACT
GAAAATTGTTCAGTAATTTTATGAATTTCACTGCTGGTTTTTCTTCTTTC
ATATCTATAATTTATTAAATTAAAGTATTTTTTTTTTCAGGATGTGCATT
TTTAACATACTATGAGAAAGAATCAGCCCAGCAAGCACAAAATGAACTTC
ATGAAAAAAAGACACTTCCAGGGGTAAGAATTCTGCTCAGGTTACAGTAA
TATTGTCCATTATTTTAAGATTGATAATATTATAAGATATATAATATTAG
TTTGTACACACTTTTGAATCTTGAAAGGTATATACAGTGACAATATTCAT
TTTACTCAAGCAGGTTCTACTCTAACTATATCGACTTTCTTACTTATCTT
CTAGTGTGGCCATGCAATGCAAGTCAAACCTGCAGTATCAGAGACGAAAA
CTGAAGATAGAAAATTATTCATTGGAATGTTATCCAAGAAATTAAATGAA
GAAGACCTAAGAGTTATGTTTTCCCCCTTTGGAACGATAGAAGAACTGAC
AGTTTTGAAAAATCCTGATGGAACTAGTAAAGGTAAAATTGTTTTGTTTG
TGTCTGTTTTATTTACAAGGTTTTTTTTCAAAATGTGGTCTAATGGACCC
TGTTGGGTCCTTTATGACCCTGTCTAATGGTGGTATATCTCTGATCATTC
TAGAAAATTTAATAACATTTTTATTAACATTGTAAATGTTGAAATGATGA
ATGTCTTCTTTTTTATCTAGGTTGTTCATTCATCAAATATGCAAACAGAT
TACAAGCACAAAATGCTATTAGAAAGTTGCACGGCTCTCAGACTATGGAG
GTATGAATTCTTCATTGACTCACTAATTCCAACTTTTGCAATAAGTTGAT
ATACTAAATCTAGCTTTATCTTACATTTTGGTATTGAAGAAATTAGATTT
TGACTGTAGGTATTTTACTTTACCCTTTGATCAAATATGTATACATTATT
ACAATCTTTTCAGGGATGCTCTTCACCTCTTGTTGTTAAAATTGCTGATA
CAGAAAAGGACAAATTGCAAAAACGTATGCAAGCTATGGCAACTAATTTA
GTCGGACTTGGTATGACAATGAGCCAATTTGGAATGCCTGGAGGCTTAAT
AAACAATGCATATCCTAATGTAGGACAAAATAATGCATATCAACAACTTT
TAACACAAATGGCAATGCCAAATACACCTGTTCCAGCTCAGCTTGTTAGT
AATCCTGGATTCGCTAATATGAACAATAACACTTTACCAAATGGTGTCAG
TGCTGCTCTCGTGGCTGCAATGGCAAACCAGCAACAACAACAATTACAAG
GACTTACTCAAACACAACAAGCAAACTCTTCACTATTCAGTTCTAGTATT
GGTCAACAGTTACCTACAAGTAGTTTCACCACGTCACAAAGCGCAACAAA
TCCATTAGCTAATAATGGTTTGTCTGCTCTTCAAACTAACATATCAGGTA
TGACATTGTTTGAATTTTGAATTAGATAAGATTGATTCAATAATGATTGA
AAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGTATTGGGATATG
CTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCATATCAA
ATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGTAACTA
AAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCGGTATC
GCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATAAACAA
TTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTCTGTTT
GATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAGATAAA
GCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTGCTAAC
CTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGTTTAAG
TTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGCAGCAG
CCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATGTCAAT
AGGGCCNATTTGGAATGCCTGGAGGCTTAATAAACAATGCATATCCTAAT
GTAGGACAAAATAATGCATATCAACAACTTTTAACACAAATGGCAATGCC
AAATACACCTGTTCCAGCTCAGCTTGTTAGTAATCCTGGATTCGCTAATA
TGAACAATAACACTTTACCAAATGGTGTCAGTGCTGCTCTCGTGGCTGCA
ATGGCAAACCAGCAACAACAACAATTACAAGGACTTACTCAAACACAACA
AGCAAACTCTTCACTATTCAGTTCTAGTATTGGTCAACAGTTACCTACAA
GTAGTTTCACCACGTCACAAAGCGCAACAAATCCATTAGCTAATAATGGT
TTGTCTGCTCTTCAAACTAACATATCAGGTATGACATTGATTCAATAATG
ATTGAAAAATGTTAATAAACAGTGCTTTAGTATAGAGGTAGAGCATTGGG
ATACGCTGCATAAGGTTTTTGGTTTGATCTCCAGCCGGGCAAGTGGTCAT
ATCAAATATTCCCAAAATGGTCCTTGATGCCTCTCTGCTTGATGCTCAGT
AACTAAAGAGAAGGGTCAAGAGTAAGTAAATAAATCCTGGGAAAAGAGCG
GTATCGCCCTGTGGTTGCAACTTTCTTTCTACTATTAATAAACCTGAATA
AACAATTTAACTTAGTTAAACAGGGAATGTAAGCAAGCTCCTTTTGATTC
TGTTTGATTTAACAATTTATATGAGACAGAATGAGTTGGGGTATAAGCAG
ATAAAGCCTAAACTCTAGTACTTTTTTTCCCTTAGGAGCCAATTCTATTG
CTAACCTTGGTGGACTAAACAATATGGCTAATCTTGCAAGTATGACAGGT
TTAAGTTCTACTCAAGTTGCAGCAAACCCAGCGGTAGTTGCTGCTGCAGC
AGCAGCCTCGGGGCCACTTCAAAGCCTCCCAAATATTCCTACCTCCAATG
TCAATAGGGCCCAGCCTAACATTTCTGCAGAGCAATGGCAAACTGCTTAC
TCAGGAGTCGAGCAATTTGTTGGTAAGACTGTCAAACAAACAGTCTTATC
AAGTGCATAGGAAATGTGTCAAAAACTTCTTGTTTATTTTGAAGATTTAT
CATCTTTGTGTTGTTGCTTTTCATTTCTTTCTGTTTTGTCATGTTGTTTT
TATTGTATGTTATAAATTATGTGTGCACAAGAAGTTGGGAGTTGCGTGCA
AGAAGTGTGGAAATTTTAAAATATTGATTTTGCATTCAAGCTACTTTTCA
CATTTTTGTTCAGCAACTTTCATAATGTATGTCATTGTCTTATGCATTTG
ATAAGTGTTTGTCTTTGTCCTGTTTTTGTCTAATTGTATTGATGACCTTC
AATGACCATTTAAAAAAAAGGAGGGATGTGTAAATGATTTCCCTGTATAT
TTAAAGTAGATATTATTCATAGTTCTAGATGAGGGTTGATATGTATCATT
TCCATTATATTTCTGCTACTTCAACTAGCAATTCTTATTTGATCATGTGA
GAATTATGCAAACCTATACTTTCTAATGTTGACTCTTTGTAGAGCTTTAT
TCTTTAGATTTTTATGTGCTTACTTTGAATTCGGTATTTCTAAATCTTGT
TTATTTTTAATTAAAGCTGCACTTCCACAAGCGTATCAAAATTTACAAAG
GCAGAATGTCGCACAACCCCAAAAAGAAGGTTAATTGTTATTTTGTCTGT
TTTATTTTGAATGACTTTATTTTTCTATTTAAAGTTAATTGTTATTACTG
GCAAGAACCTTATTGATCATGTTGATTTTTATTTGCTTTCAGGTCCTGAT
GGTTCAAATCTGTTCATTTACCACCTTCCACCTGAATTTACCGATGCTGA
TCTGATGCAGACCTTTATGCCATTTGGAAATGTTCTCTCTGCTAAAGTCT
TCATTGACAAACCTACGTTGTTGAGCAAATGTTTTGGTAATTGTTATTTT
ATAAACACTTTATTTTTTTGTTGATCAGATGAAATTAATAGTTTGTGAAT
AGCACTCATATTTTTTCATTGTGTTACTTGTAAATTATCCTTTTTAAACT
TTAGCACATGTATCATTTTGTAACTTGCAATGTTTTGTAATGTTTACTTT
TTTTCAGGTTTTGTCAGTTTTGACAACCAACACAGTGCCAGGCAAGCTAT
TGAAGCAATGAATGGATTTAGTGTTGGTTCCAAGCGGTTAAAGGTTCAGT
TGAAGCGACCAAAAGACCAAAACAAACCATATTAAAAAAACATGCATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034108	XLOC_034108	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_238	supercontig	scaffold_238:14115..20762 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.58153	1.99184	3.65365	6.29013	3.92286e-05	1.86119e-06	1.74531	0.0473931	82.7718	98.3331	88.3023	56.0223	39.6495	22.7698	16.3168	24.6275	33.4612	48.9904	35.5745	44.3239	34.1835	20.4706	2.93706	9.31793	0.0133954	4.48058e-08	0.530329	6.08837	7.69791	0.259962

Blast

[Close]

BLAST of TCONS_00054031 vs. Swiss-Prot (Human)
Match: CELF2 (CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 5.961e-122
Identity = 219/479 (45.72%), Postives = 290/479 (60.54%), Query Frame = 3

Query:  156 EPEACKLFIGQVPRTWTEKELKPIFDQYGEIHDLTVLHDKYTG--QHKGCAFLTYYEKESAQQAQNELHEKKTLPGCGHAMQVKPAVSE--TKTEDRKLFIGMLSKKLNEEDLRVMFSPFGTIEELTVLKNPDGTSKGCSFIKYANRLQAQNAIRKLHGSQTMEGCSSPLVVKIADTEKDKLQKRMQ------------AMATNLVGLGMTMSQFGMPGGLINNAYP--NVGQNNAYQQL--LTQMAMPNTPVPAQLVSNPGFANMNNNTLPNGVSAALVAAMANXXXXXXXXXXXXXXANSSLFSSSIGQQLPTSSFTTSQSATNPLA-----NNGLSA--LQTNISGANSIXXXXXXXXXXXXXXXXPQAYQN--LQRQNVAQPQKEGPDGSNLFIYHLPPEFTDADLMQTFMPFGNVLSAKVFIDKPTLLSKCFGFVSFDNQHSARQAIEAMNGFSVGSKRLKVQLKRPKDQNKPY 1505
            +P+A K+F+GQ+PR+W+EKELK +F+ YG ++ + VL D+     Q KGC F+T+Y +++A +AQN LH  KTLPG  H +Q+KPA SE     EDRKLFIGM+SKK NE D+RVMFSPFG IEE  +L+ PDG S+GC+F+ ++ R  AQNAI+ +H SQTMEGCSSP+VVK ADT+KDK Q+R+Q            A   NL GLG    Q+     L+  A    N+G  +  QQ+  +  + + N    A   +    +  + N  P   +++ + A+ +         T     NS    +S+G     +  T   +  N LA     N GL A  L    +G                A ALP  Y    LQ+Q+ A  QKEGP+G+NLFIYHLP EF D D++Q FMPFGNV+SAKVFIDK T LSKCFGFVS+DN  SA+ AI+AMNGF +G KRLKVQLKR K+ +KPY
Sbjct:   36 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL---ALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSL---TSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508

The following BLAST results are available for this feature:

BLAST of TCONS_00054031 vs. Swiss-Prot (Human)

BLAST of TCONS_00054031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CELF2	5.961e-122	45.72	CUGBP Elav-like family member 2 OS=Homo sapiens GN...	[more]

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TCONS_00054031 (transcript) - C. hemisphaerica