TCONS_00054018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054018
Unique NameTCONS_00054018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054018 ID=TCONS_00054018|Name=TCONS_00054018|organism=Clytia hemisphaerica|type=transcript|length=333bp
GTCACGTTTTAGAAACAAATGCTGATCTTTGTCTGGTGAGATTGATAAGT
AATATTCATATGCTTCATAATTTAACCCTAAAGAATCCAAAATTGTATCA
ATAGATCCAATTTCAACATACTCAGTCTTATCAGGATCCagaatgtttct
atttttaggaTGCAAATTTGTATCTATATACTCTTGAACAGTTTGGATCA
CATTATTTCTAGCAACCAAAATATCATGTTTTTCAGTTTCAGGTAACCCT
TCAGGAAGCGGTTCAGACAAAATAGTACGCTTGcagaaaagttttccaaa
ttgaaatcggcattcatttttgcgatatttact
Run BLAST on NCBI

protein sequence of TCONS_00054018-protein

>TCONS_00054018-protein ID=TCONS_00054018-protein|Name=TCONS_00054018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
SKYRKNECRFQFGKLFCKRTILSEPLPEGLPETEKHDILVARNNVIQTVQ
EYIDTNLHPKNRNILDPDKTEYVEIGSIDTILDSLGLNYEAYEYYLSISP
DKDQHLFLKRD
Run BLAST on NCBI

transcript from alignment at scaffold_237:552056..552388

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054018 ID=TCONS_00054018|Name=TCONS_00054018|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_237:552056..552388 (Clytia hemisphaerica)
agtaaatatcgcaaaaatgaatgccgatttcaatttggaaaacttttctg
CAAGCGTACTATTTTGTCTGAACCGCTTCCTGAAGGGTTACCTGAAACTG
AAAAACATGATATTTTGGTTGCTAGAAATAATGTGATCCAAACTGTTCAA
GAGTATATAGATACAAATTTGCAtcctaaaaatagaaacattctGGATCC
TGATAAGACTGAGTATGTTGAAATTGGATCTATTGATACAATTTTGGATT
CTTTAGGGTTAAATTATGAAGCATATGAATATTACTTATCAATCTCACCA
GACAAAGATCAGCATTTGTTTCTAAAACGTGAC

Coding sequence (CDS) from alignment at scaffold_237:552056..552388

>TCONS_00054018 ID=TCONS_00054018|Name=TCONS_00054018|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_237:552056..552388 (Clytia hemisphaerica)
agtaaatatcgcaaaaatgaatgccgatttcaatttggaaaacttttctg
CAAGCGTACTATTTTGTCTGAACCGCTTCCTGAAGGGTTACCTGAAACTG
AAAAACATGATATTTTGGTTGCTAGAAATAATGTGATCCAAACTGTTCAA
GAGTATATAGATACAAATTTGCAtcctaaaaatagaaacattctGGATCC
TGATAAGACTGAGTATGTTGAAATTGGATCTATTGATACAATTTTGGATT
CTTTAGGGTTAAATTATGAAGCATATGAATATTACTTATCAATCTCACCA
GACAAAGATCAGCATTTGTTTCTAAAACGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034103XLOC_034103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054018-exon-scaffold_237-1491911889:552056..552388TCONS_00054018-exon-scaffold_237-1491911889:552056..552388Clytia hemisphaericaexon
TCONS_00054018-exon-scaffold_237-1510915933:552056..552388TCONS_00054018-exon-scaffold_237-1510915933:552056..552388Clytia hemisphaericaexon
TCONS_00054018-exon-scaffold_237-1575043694:552056..552388TCONS_00054018-exon-scaffold_237-1575043694:552056..552388Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054018-proteinTCONS_00054018-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:552056..552388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.86687	4.84786	5.48814	1.40591	1.02989	0	0	0.354602	0.454809	1.35321	1.57914	0.930075	1.85739	0.54206	1.59593	2.05114	0.559696	1.38422	2.64043	1.37172	5.64935	3.12393	1.56211	1.60912	0	0	6.4611	3.07061	2.67725	2.24172
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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