TCONS_00054015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054015
Unique NameTCONS_00054015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054015 ID=TCONS_00054015|Name=TCONS_00054015|organism=Clytia hemisphaerica|type=transcript|length=394bp
AAAATAGGTGACAGGattgaaattttctatttcttcaaagtTGATCGATG
AGTACTTTTGTTCATCAAAACCaaacacagattttttaaacatactGCGG
TTACACTTTACACAGATGTAAGAAGGACCCTCCTGTTTTGTTTTTACTGC
CTGAAGTTCCCAACCCTTTAAACTACATTAAGTTTCTTGTTAGCTTTGTA
ATCTTTacgctttctttctttttcattttcatgtttttctgacccTTTAC
TCAATTCTCTTCGCAtgcgttttaattttttttcattttcatgtttttct
gacccTTTATTCAATTCTCGTCGTGtgcgttttaattttttttcactttc
atgtttttctgacccTTTATTCGATTCTCGACgttctattttgt
Run BLAST on NCBI

transcript from alignment at scaffold_237:550106..550499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054015 ID=TCONS_00054015|Name=TCONS_00054015|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_237:550106..550499 (Clytia hemisphaerica)
acaaaatagaacGTCGAGAATCGAATAAAgggtcagaaaaacatgaaagt
gaaaaaaaattaaaacgcaCACGACGAGAATTGAATAAAgggtcagaaaa
acatgaaaatgaaaaaaaattaaaacgcaTGCGAAGAGAATTGAGTAAAg
ggtcagaaaaacatgaaaatgaaaaagaaagaaagcgtAAAGATTACAAA
GCTAACAAGAAACTTAATGTAGTTTAAAGGGTTGGGAACTTCAGGCAGTA
AAAACAAAACAGGAGGGTCCTTCTTACATCTGTGTAAAGTGTAACCGCag
tatgtttaaaaaatctgtgtttGGTTTTGATGAACAAAAGTACTCATCGA
TCAactttgaagaaatagaaaatttcaatCCTGTCACCTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034100XLOC_034100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054015-exon-scaffold_237-1491911889:550106..550499TCONS_00054015-exon-scaffold_237-1491911889:550106..550499Clytia hemisphaericaexon
TCONS_00054015-exon-scaffold_237-1510915933:550106..550499TCONS_00054015-exon-scaffold_237-1510915933:550106..550499Clytia hemisphaericaexon
TCONS_00054015-exon-scaffold_237-1575043694:550106..550499TCONS_00054015-exon-scaffold_237-1575043694:550106..550499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:550106..550499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517132	0.221073	0.247714	0.453649	0.258615	0	0	1.23673	0.161602	0.20017	0.268381	0.292145	0.127541	0.979708	0.217788	0.421808	0	0.295113	0	0.853288	0.370831	0.542636	0	0.399808	0.205897	0.431871	0.788871	0	0	1.08431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top