TCONS_00054014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054014
Unique NameTCONS_00054014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054014 ID=TCONS_00054014|Name=TCONS_00054014|organism=Clytia hemisphaerica|type=transcript|length=925bp
GAAACGGATTATGACGAGGAATACAAATGCACAGCTGCCTACACCGAGAC
GATGTCTTTGGGACATGCCGAACGTTCTATGAACCAAAAAAAATTATTGT
ATGGGAGGAACCAAAGCAAAACACCACAGATATTGACAGTTTTGGGGTCC
ACGAGGTGAAGAGGTCGGGTGACTACATTCTCGTTGAAGACCCTTTTGAT
CGCAGGAGCCGTATAAAGAGAGTATGATGAGGGCCGATTAATACAACTCG
ACAACGGAATCGTACCAAACGTTACGGAAGGCTTATACGAGAAGTTACGT
TGGGGACTCAAGTATTTTAGCAAGAAGATCTGTGATAACACCCTGGCCCC
GATGCTTGAAGCTCACCTTTCTTCAGCAATTATGAACCAAAAGAACCTCA
TGATGAGGGAGTGGGCACGTATCTGCTTCATACAGAACGAGATGACCAGG
GTACACCAATGGATGATTTCAACTTTTCCTACTTCATCAGCGAGGTGGAT
TCATCAAGAAGCAGGAGTCACCGTTTCACTTGCTGGTGATGCGCTGGAAG
TTGGAAGATGTATGAGAGTATCTAATTACCACATCTTCCTTAACCGAACA
TACAATGGCACTTGTTATTTAGATTTCCCCATCATTACAGTACGCGAGAA
AGGAATCAGTTTCTTGAGACTGGTGGACCGTCAAATTGTTTCCGTCAGCG
TTCGCATAAACTGCACCGAAAGGCCTCAACGCACATTTATCAAGAAGTCA
GAGGGAGTCTTCTACCAAGTCGACCACGAAGGGGATGTCACACTAGTCAA
GCTGAAGACCGACACTGCAAAGGAGCCGCATAAGTTGAAGCTAAGAAAAC
TGAGAGGCTTCGACGAAAAGATATTGAAGAAGATCCCCGACCATCTCGAA
CCTTATACCATGCTCCAAATGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00054014-protein

>TCONS_00054014-protein ID=TCONS_00054014-protein|Name=TCONS_00054014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MLEAHLSSAIMNQKNLMMREWARICFIQNEMTRVHQWMISTFPTSSARWI
HQEAGVTVSLAGDALEVGRCMRVSNYHIFLNRTYNGTCYLDFPIITVREK
GISFLRLVDRQIVSVSVRINCTERPQRTFIKKSEGVFYQVDHEGDVTLVK
LKTDTAKEPHKLKLRKLRGFDEKILKKIPDHLEPYTMLQMF
Run BLAST on NCBI

transcript from alignment at scaffold_237:541927..542851

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054014 ID=TCONS_00054014|Name=TCONS_00054014|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at scaffold_237:541927..542851 (Clytia hemisphaerica)
AGAACATTTGGAGCATGGTATAAGGTTCGAGATGGTCGGGGATCTTCTTC
AATATCTTTTCGTCGAAGCCTCTCAGTTTTCTTAGCTTCAACTTATGCGG
CTCCTTTGCAGTGTCGGTCTTCAGCTTGACTAGTGTGACATCCCCTTCGT
GGTCGACTTGGTAGAAGACTCCCTCTGACTTCTTGATAAATGTGCGTTGA
GGCCTTTCGGTGCAGTTTATGCGAACGCTGACGGAAACAATTTGACGGTC
CACCAGTCTCAAGAAACTGATTCCTTTCTCGCGTACTGTAATGATGGGGA
AATCTAAATAACAAGTGCCATTGTATGTTCGGTTAAGGAAGATGTGGTAA
TTAGATACTCTCATACATCTTCCAACTTCCAGCGCATCACCAGCAAGTGA
AACGGTGACTCCTGCTTCTTGATGAATCCACCTCGCTGATGAAGTAGGAA
AAGTTGAAATCATCCATTGGTGTACCCTGGTCATCTCGTTCTGTATGAAG
CAGATACGTGCCCACTCCCTCATCATGAGGTTCTTTTGGTTCATAATTGC
TGAAGAAAGGTGAGCTTCAAGCATCGGGGCCAGGGTGTTATCACAGATCT
TCTTGCTAAAATACTTGAGTCCCCAACGTAACTTCTCGTATAAGCCTTCC
GTAACGTTTGGTACGATTCCGTTGTCGAGTTGTATTAATCGGCCCTCATC
ATACTCTCTTTATACGGCTCCTGCGATCAAAAGGGTCTTCAACGAGAATG
TAGTCACCCGACCTCTTCACCTCGTGGACCCCAAAACTGTCAATATCTGT
GGTGTTTTGCTTTGGTTCCTCCCATACAATAATTTTTTTTGGTTCATAGA
ACGTTCGGCATGTCCCAAAGACATCGTCTCGGTGTAGGCAGCTGTGCATT
TGTATTCCTCGTCATAATCCGTTTC

Coding sequence (CDS) from alignment at scaffold_237:541927..542851

>TCONS_00054014 ID=TCONS_00054014|Name=TCONS_00054014|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_237:541927..542851 (Clytia hemisphaerica)
GAACATTTGGAGCATGGTATAAGGTTCGAGATGGTCGGGGATCTTCTTCA
ATATCTTTTCGTCGAAGCCTCTCAGTTTTCTTAGCTTCAACTTATGCGGC
TCCTTTGCAGTGTCGGTCTTCAGCTTGACTAGTGTGACATCCCCTTCGTG
GTCGACTTGGTAGAAGACTCCCTCTGACTTCTTGATAAATGTGCGTTGAG
GCCTTTCGGTGCAGTTTATGCGAACGCTGACGGAAACAATTTGACGGTCC
ACCAGTCTCAAGAAACTGATTCCTTTCTCGCGTACTGTAATGATGGGGAA
ATCTAAATAACAAGTGCCATTGTATGTTCGGTTAAGGAAGATGTGGTAAT
TAGATACTCTCATACATCTTCCAACTTCCAGCGCATCACCAGCAAGTGAA
ACGGTGACTCCTGCTTCTTGATGAATCCACCTCGCTGATGAAGTAGGAAA
AGTTGAAATCATCCATTGGTGTACCCTGGTCATCTCGTTCTGTATGAAGC
AGATACGTGCCCACTCCCTCATCATGAGGTTCTTTTGGTTCATAATTGCT
GAAGAAAGGTGAGCTTCAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034099XLOC_034099Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054014-proteinTCONS_00054014-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054014-exon-scaffold_237-1491911889:541927..542851TCONS_00054014-exon-scaffold_237-1491911889:541927..542851Clytia hemisphaericaexon
TCONS_00054014-exon-scaffold_237-1510915933:541927..542851TCONS_00054014-exon-scaffold_237-1510915933:541927..542851Clytia hemisphaericaexon
TCONS_00054014-exon-scaffold_237-1575043694:541927..542851TCONS_00054014-exon-scaffold_237-1575043694:541927..542851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:541927..542851 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.2973	0.144957	0.280515	0.439104	0.0668208	0.105605	0.955564	1.96809	0.208774	0.56892	0.903613	0.593999	2.17497	2.53251	0.450177	1.35874	0.409166	0.457508	0.105345	0.0551181	0.479077	0.701031	0.056813	0.309907	0.691594	0.949587	0.135886	0.145021	0.0549965	0.168098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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