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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053998 ID=TCONS_00053998|Name=TCONS_00053998|organism=Clytia hemisphaerica|type=transcript|length=1602bp
AAATTTTACGTTTCTTTATTCATCAAATTTGACTTCATGACAATTTCGCT
GCTTTACTCCAAGAGGTGTCAAGTAATATAGGTTTAACATTAAAATGTCT
TTTGcattcaaaataataataaagtgCATAAtatcctaaaaataaaaata
tcgttagacgaaaattaaaaaaatgtagtaTTTCCAGAATGCGGGCGAAA
gcaaaaagctctcatgcggccggccggaaaaattttgttttgctattttt
gataacttaagatcattgaaatagaattttaaagataacttttatataCA
AACACCACAAAGTAAGCCCTAGCCGGTTTCtggaaacatttttttatttt
ttttattttcgccttattaCAAACAATACACACTGAAAAAAATAGTCTCA
TCTAATAAAAGTACAATTTCATTAAGTTTAGATAAAATTTGCATGCATAT
TCTAAATTCTATACTATTTAtcagtttaaatttcaaaattattcatCCTT
TAATTAACTATTTAACGCGGCAATATGGCAATGGTCAAAATATTGTAAGA
AATTCCAATCAAATGATAGGAAGGCGAGTCGACATTAagaagatattttg
aaaattttatatgaaaaattaTAAATGATTCCAGGTCCGATAAAAAAGCA
GGAGATTTCAAGTTCAAGAATAGTTATTAATCGTTAAAAAATGCTGAAGG
GGCGATAGCTCGGAAATCCCTTGTTATTTTCACCGAGTAACGAAAAAAtg
gatttaatttcaatttacatATATCAAGGGGTATCAAGAGCCCTCTcgta
atttgttttttttttaactcggtgaAAATAACTCAGGACTTAAGAGGCTT
CCAGCGGTTACCTGGTTAGTAAAGGCCGGTCTTCAccttcgcgcgacatg
agcgaaaacttttttgacgtttttgtaaagTCGGTTTgtttggtcggttg
aaaaatgaagcaattccattggtcggaATTTACGTAACGGGtgaaaaaag
tagaatttccttcaactttttttttgttcgcgcgaaactttttaatgacg
taatcttttcttcaggtgAAAAAGgctaagaaaaaaactgttgcCCATTT
CGCGAGAAAGTGGACACCGGCCTTAAAGGGTGGCGTGATGTGATGTGGTG
AAGTGTGGCGTGGCTGGTTTTCTAAAGTGATAATGCATTAATCCAAATTA
AAAACTACATAAATATGTAAAGAGGATGTCaataattaaaagaaaacttt
tcaagGAAATTGTAAATAATGAAAATCCAATATTTCTGGACGCACCAGTG
TAATGTCCACAACACAAACTATTACGTTGTTGAGCTAATACATTGGCAAT
CGTATTTGACAAGGAGGATAACAATGTACAATGTGTATCTAGAGAGGTCT
GGGGATTAGAATCTTGATTACTTTCATAAGTAGGAAGTAACTTTCATAGC
AGAATCTTCTGGGTACACTAGCTTGATAGAAAAGGATTTAAACAAGTCAT
GTTCTGACTTGAGGCTATGAAATTTATACCTCACACTTACTAATAGTAAG
GATATGACATTGAGGGAAATCAGGGATTAATAGCCgagtttaattttgaa
at Run BLAST on NCBI transcript from alignment at scaffold_237:230013..231614 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053998 ID=TCONS_00053998|Name=TCONS_00053998|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at scaffold_237:230013..231614 (Clytia hemisphaerica)
atttcaaaattaaactcGGCTATTAATCCCTGATTTCCCTCAATGTCATA
TCCTTACTATTAGTAAGTGTGAGGTATAAATTTCATAGCCTCAAGTCAGA
ACATGACTTGTTTAAATCCTTTTCTATCAAGCTAGTGTACCCAGAAGATT
CTGCTATGAAAGTTACTTCCTACTTATGAAAGTAATCAAGATTCTAATCC
CCAGACCTCTCTAGATACACATTGTACATTGTTATCCTCCTTGTCAAATA
CGATTGCCAATGTATTAGCTCAACAACGTAATAGTTTGTGTTGTGGACAT
TACACTGGTGCGTCCAGAAATATTGGATTTTCATTATTTACAATTTCctt
gaaaagttttcttttaattattGACATCCTCTTTACATATTTATGTAGTT
TTTAATTTGGATTAATGCATTATCACTTTAGAAAACCAGCCACGCCACAC
TTCACCACATCACATCACGCCACCCTTTAAGGCCGGTGTCCACTTTCTCG
CGAAATGGgcaacagtttttttcttagcCTTTTTcacctgaagaaaagat
tacgtcattaaaaagtttcgcgcgaacaaaaaaaaagttgaaggaaattc
tacttttttcaCCCGTTACGTAAATtccgaccaatggaattgcttcattt
ttcaaccgaccaaacAAACCGActttacaaaaacgtcaaaaaagttttcg
ctcatgtcgcgcgaaggTGAAGACCGGCCTTTACTAACCAGGTAACCGCT
GGAAGCCTCTTAAGTCCTGAGTTATTTtcaccgagttaaaaaaaaaacaa
attacgAGAGGGCTCTTGATACCCCTTGATATatgtaaattgaaattaaa
tccaTTTTTTCGTTACTCGGTGAAAATAACAAGGGATTTCCGAGCTATCG
CCCCTTCAGCATTTTTTAACGATTAATAACTATTCTTGAACTTGAAATCT
CCTGCTTTTTTATCGGACCTGGAATCATTTAtaatttttcatataaaatt
ttcaaaatatcttctTAATGTCGACTCGCCTTCCTATCATTTGATTGGAA
TTTCTTACAATATTTTGACCATTGCCATATTGCCGCGTTAAATAGTTAAT
TAAAGGatgaataattttgaaatttaaactgaTAAATAGTATAGAATTTA
GAATATGCATGCAAATTTTATCTAAACTTAATGAAATTGTACTTTTATTA
GATGAGACTATTTTTTTCAGTGTGTATTGTTTGtaataaggcgaaaataa
aaaaaataaaaaaatgtttccaGAAACCGGCTAGGGCTTACTTTGTGGTG
TTTGtatataaaagttatctttaaaattctatttcaatgatcttaagtta
tcaaaaatagcaaaacaaaatttttccggccggccgcatgagagcttttt
gcTTTCGCCCGCATTCTGGAAAtactacatttttttaattttcgtctaac
gatatttttatttttaggataTTATGcactttattattattttgaatgCA
AAAGACATTTTAATGTTAAACCTATATTACTTGACACCTCTTGGAGTAAA
GCAGCGAAATTGTCATGAAGTCAAATTTGATGAATAAAGAAACGTAAAAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053998-exon-scaffold_237-1491911889:230013..231614 | TCONS_00053998-exon-scaffold_237-1491911889:230013..231614 | Clytia hemisphaerica | exon |
| TCONS_00053998-exon-scaffold_237-1510915933:230013..231614 | TCONS_00053998-exon-scaffold_237-1510915933:230013..231614 | Clytia hemisphaerica | exon |
| TCONS_00053998-exon-scaffold_237-1575043694:230013..231614 | TCONS_00053998-exon-scaffold_237-1575043694:230013..231614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:230013..231614 . |
Blast
The following BLAST results are available for this feature:
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