TCONS_00053992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053992
Unique NameTCONS_00053992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053992 ID=TCONS_00053992|Name=TCONS_00053992|organism=Clytia hemisphaerica|type=transcript|length=664bp
NNTAGTTGTTATCTCCAAGTGTTAGCTGCAATTCTGTATGGATTGTGCGA
AATCGAGTACGAAGTGATTCAGTTTTGGATGTCAATAGTTCAGCCTCTGT
AAGAGTAAGTTCCTCAATGTCACTTTCCACAACCATGTCTGCAAGATCGT
TTGCAATAACACACTGCTCTATGTTCAATTGCTTTACCCTTTCCATTTCG
ACTGGTGTTCTTTTGTTGAGGGTTGGAGTAGAAATTTTGGTGATTGGTGT
AGAAGAAGTCTGGTTGATAAGTTTGGTTCTGTGATGATTGGTGGAATTGA
TTGAAGTTTGACCATGAAATCCTGATGATTGATTAACCAAAACAGGAGTG
Atgtgtgaagtctgaccattgatgggtgaagtcgggccattgatgggtga
agtcGGACCATTGAtgtgtgaagtctgaccattgatgtgTGAAGTTTGAC
CATTGAtgtgtgaagtctgaccattgatgtgTGAAGTATGACCATTGATG
TGTGAAGTATGACCATTGAtgtgtgaagtctgaccattgatacgtgaagt
ctgaccattgacacgtgaagtctgaccattgatacgtgaagtctgaccat
tgatgggtgaagtctgaccattgatacgtgaagtctgaccattgatacgt
gaagtctgaccatN
Run BLAST on NCBI

protein sequence of TCONS_00053992-protein

>TCONS_00053992-protein ID=TCONS_00053992-protein|Name=TCONS_00053992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
XGQTSRINGQTSRINGQTSPINGQTSRINGQTSRVNGQTSRINGQTSHIN
GHTSHINGHTSHINGQTSHINGQTSHINGQTSHINGPTSPINGPTSPING
QTSHITPVLVNQSSGFHGQTSINSTNHHRTKLINQTSSTPITKISTPTLN
KRTPVEMERVKQLNIEQCVIANDLADMVVESDIEELTLTEAELLTSKTES
LRTRFRTIHTELQLTLGDNNX
Run BLAST on NCBI

transcript from alignment at scaffold_237:58392..59055

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053992 ID=TCONS_00053992|Name=TCONS_00053992|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at scaffold_237:58392..59055 (Clytia hemisphaerica)
Natggtcagacttcacgtatcaatggtcagacttcacgtatcaatggtca
gacttcacccatcaatggtcagacttcacgtatcaatggtcagacttcac
gtgtcaatggtcagacttcacgtatcaatggtcagacttcacacaTCAAT
GGTCATACTTCACACATCAATGGTCATACTTCAcacatcaatggtcagac
ttcacacaTCAATGGTCAAACTTCAcacatcaatggtcagacttcacaca
TCAATGGTCCgacttcacccatcaatggcccgacttcacccatcaatggt
cagacttcacacaTCACTCCTGTTTTGGTTAATCAATCATCAGGATTTCA
TGGTCAAACTTCAATCAATTCCACCAATCATCACAGAACCAAACTTATCA
ACCAGACTTCTTCTACACCAATCACCAAAATTTCTACTCCAACCCTCAAC
AAAAGAACACCAGTCGAAATGGAAAGGGTAAAGCAATTGAACATAGAGCA
GTGTGTTATTGCAAACGATCTTGCAGACATGGTTGTGGAAAGTGACATTG
AGGAACTTACTCTTACAGAGGCTGAACTATTGACATCCAAAACTGAATCA
CTTCGTACTCGATTTCGCACAATCCATACAGAATTGCAGCTAACACTTGG
AGATAACAACTANN

Coding sequence (CDS) from alignment at scaffold_237:58392..59055

>TCONS_00053992 ID=TCONS_00053992|Name=TCONS_00053992|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_237:58392..59055 (Clytia hemisphaerica)
Natggtcagacttcacgtatcaatggtcagacttcacgtatcaatggtca
gacttcacccatcaatggtcagacttcacgtatcaatggtcagacttcac
gtgtcaatggtcagacttcacgtatcaatggtcagacttcacacaTCAAT
GGTCATACTTCACACATCAATGGTCATACTTCAcacatcaatggtcagac
ttcacacaTCAATGGTCAAACTTCAcacatcaatggtcagacttcacaca
TCAATGGTCCgacttcacccatcaatggcccgacttcacccatcaatggt
cagacttcacacaTCACTCCTGTTTTGGTTAATCAATCATCAGGATTTCA
TGGTCAAACTTCAATCAATTCCACCAATCATCACAGAACCAAACTTATCA
ACCAGACTTCTTCTACACCAATCACCAAAATTTCTACTCCAACCCTCAAC
AAAAGAACACCAGTCGAAATGGAAAGGGTAAAGCAATTGAACATAGAGCA
GTGTGTTATTGCAAACGATCTTGCAGACATGGTTGTGGAAAGTGACATTG
AGGAACTTACTCTTACAGAGGCTGAACTATTGACATCCAAAACTGAATCA
CTTCGTACTCGATTTCGCACAATCCATACAGAATTGCAGCTAACACTTGG
AGATAACAACTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034077XLOC_034077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053992-exon-scaffold_237-1491911889:58392..59055TCONS_00053992-exon-scaffold_237-1491911889:58392..59055Clytia hemisphaericaexon
TCONS_00053992-exon-scaffold_237-1510915933:58392..59055TCONS_00053992-exon-scaffold_237-1510915933:58392..59055Clytia hemisphaericaexon
TCONS_00053992-exon-scaffold_237-1575043694:58392..59055TCONS_00053992-exon-scaffold_237-1575043694:58392..59055Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053992-proteinTCONS_00053992-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:58392..59055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58407	2.38347	1.87606	1.13611	0.942151	0.334207	0.552689	0.374826	0.332918	0.230346	0.324209	0.708384	0.353262	0	0.348939	0.414007	0.117068	0.289656	0.188149	0.664528	0.812257	0.369495	0.439163	1.28157	1.4239	0.840364	1.09198	0.420851	0.706748	0.343125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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