TCONS_00053986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053986
Unique NameTCONS_00053986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053986 ID=TCONS_00053986|Name=TCONS_00053986|organism=Clytia hemisphaerica|type=transcript|length=232bp
ATGTAAATTGTACACTTAAAGATTACAATATATAAGTgtcatttaatttt
catttttctataaaTCTCCCACCCTCTAATGGCCTCTAATAATAAACTCT
TATACTAtatagtcatttaaaaaattcatacaAAAGTActtaaaatattt
gttacaaAACTATCGTGTTTagaaaaactatcaaaacaTCTTGTGAAAAC
TTCAGTGTGAATTTCATATTTCACAAATAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_237:22755..22986

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053986 ID=TCONS_00053986|Name=TCONS_00053986|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at scaffold_237:22755..22986 (Clytia hemisphaerica)
CCCTATTTGTGAAATATGAAATTCACACTGAAGTTTTCACAAGAtgtttt
gatagtttttctAAACACGATAGTTttgtaacaaatattttaagTACTTT
tgtatgaattttttaaatgactataTAGTATAAGAGTTTATTATTAGAGG
CCATTAGAGGGTGGGAGAtttatagaaaaatgaaaattaaatgacACTTA
TATATTGTAATCTTTAAGTGTACAATTTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034071XLOC_034071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053986-exon-scaffold_237-1491911889:22755..22986TCONS_00053986-exon-scaffold_237-1491911889:22755..22986Clytia hemisphaericaexon
TCONS_00053986-exon-scaffold_237-1510915933:22755..22986TCONS_00053986-exon-scaffold_237-1510915933:22755..22986Clytia hemisphaericaexon
TCONS_00053986-exon-scaffold_237-1575043694:22755..22986TCONS_00053986-exon-scaffold_237-1575043694:22755..22986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:22755..22986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06887	1.99509	0	0	0	0	0	0	0.862027	2.13552	2.07279	1.36257	0.680337	2.82615	2.90435	3.74017	1.53586	3.93552	0	1.13791	2.96716	1.44728	2.34581	3.19902	0	0	2.80536	2.99395	3.40621	1.1568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top