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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053980 ID=TCONS_00053980|Name=TCONS_00053980|organism=Clytia hemisphaerica|type=transcript|length=1245bp
CACGCCGCCGAGAATCtaaacaaaaatggcggatgCTGTAAACTACTTGT
ATTGATGATGGAAAATTCTGAAGCCTCAAAGGATCAAGATCAAAATGTTC
AAAGTAAAATTATACATAAAAAGAGAAAGAAGAGACACAAAAGAAGTGAG
GCTGGCAAAAAGAAACAGAATGCCAAAACCAAAGTCAGACAAAAAGTCAG
CAAAGCAAAATTCAAAGCGAAATTGGAGCTTGGCAAAAAGAATGATACTA
TCACAAAATTGCAGGAGagattaatgaaattttgccgcaAAACACTGCCA
AACTTATCCTCTGTCCGCACAAAAACAGTCATTGCAACAAATGTTAAGAG
CCATATAAATACTACGAACTCTAGGGATTTCATAATACGAAAACTGGAAG
GAATTCCAAAAGTGAATCCAAATGATTTTGACTTCATTGATTACAATGTT
GGATCTGGAGTTTTTGGGTCTGTGAAGCTTGGGCGAATAAAAACTTTGAA
CTCCACAATTGCAGCCAAAGTGTTGGATGAAAAGACATCAAGTAAAAGTC
TTCTGGCTGAGGTTGTTACTCTTCTTACGTTATCTGGAAGTCAATATTTT
CCCTTTTGTTATGGGTTACTGGATGATACCGATAAACCTAAGGAACCATT
AAATAAATGTATCCTTATGGAGTTTTTAGGCCAAGTTAATGGAGATATGT
ATTCCCCTTATCCAACCTTGGCAAAGATGGCATCTTCACGGTTGTTAAAT
CACACAAATATAAGACATATTTTCTCCTTAATTCTTGAAGGTGTTCAATT
TCTCCACTTGAAAGGTATTTTGCATAATGATATAAAGGCTGACAATATTG
TAGTATGCAAGGAACGTGTTGTTCTTATTGATTTTGGCAAAGCAACAATG
ATAAAATGTCCAGTGACATATAATATCAAGAAGGCAGACCAAGTGACTTA
TAACCTAATACCACAGACATCTGGCACATGAATTGCGcaacaaaacaaat
tcaaaacaaacaaaacttacAGACATTTATTCCATCGGTTATATGTTCAA
ACACGTGGCAGCTACTCTATCGTACAAGCCCCTCATTGAACTAGGTAGGC
ACATGAAGGTGCATAGAATCGGCATTGATTTTTTTGAGTTTAGAGTAGTA
CTGATACATTTATGTAATTGGGGAGGGGTACTTGGTAAAAAGGGGTATGA
CAGGGGATGTTTCACTGGTCAGGTTACCTTCCTTCATAGTCCCAG Run BLAST on NCBI protein sequence of TCONS_00053980-protein >TCONS_00053980-protein ID=TCONS_00053980-protein|Name=TCONS_00053980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
HAAENLNKNGGCCKLLVLMMENSEASKDQDQNVQSKIIHKKRKKRHKRSE
AGKKKQNAKTKVRQKVSKAKFKAKLELGKKNDTITKLQERLMKFCRKTLP
NLSSVRTKTVIATNVKSHINTTNSRDFIIRKLEGIPKVNPNDFDFIDYNV
GSGVFGSVKLGRIKTLNSTIAAKVLDEKTSSKSLLAEVVTLLTLSGSQYF
PFCYGLLDDTDKPKEPLNKCILMEFLGQVNGDMYSPYPTLAKMASSRLLN
HTNIRHIFSLILEGVQFLHLKGILHNDIKADNIVVCKERVVLIDFGKATM
IKCPVTYNIKKADQVTYNLIPQTSGT Run BLAST on NCBI transcript from alignment at scaffold_237:404349..406371- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053980 ID=TCONS_00053980|Name=TCONS_00053980|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at scaffold_237:404349..406371- (Clytia hemisphaerica)
CACGCCGCCGAGAATCTAAACAAAAATGGCGGATGCTGTAAACTACTTGT
ATTGATGATGGAAAATTCTGAAGCCTCAAAGGATCAAGATCAAAATGTTC
AAAGTAAAATTATACATAAAAAGAGGTAGGTTATTTCGAAATTATAGGAT
AAAATACTTCATTGATATATTCCTTCGATTCTATATTCCTCAAAATTCCC
CTTACAGTAAAAAGGGGAAAATGTATGGCTATTTTCTTATTTCTGTTTTT
GAGCGAGTCGTCACCTTCATAACACATAGCTTTACTGATAGTTGTTCAAC
CACGGCAGAACACAACATGTATGTCAGTGCATTAAGAAAGTTTGTGTGCA
GAGGGCCAAACACTCCAGTTGTTTTTTTTTAACTTTGGCAGGCCCATTCA
GAGCATTTTGGCACCCATTTCTATGCTGCTATGACCCCTTCATTATTGTC
CGGTGTTCAAAGTATTCGATCTTGACACCGAACATTGGCACCAGACATTT
GGCACCAGACATTTGGCACCGGACATTTTCTGTGTCCAGTGTATAGGCGT
CCCTTTCTCTCATTTACCCCACAAGTACCACCATTAATACTACAATATAT
TTGAAGCCTGGATGGCGTCTCAGTTGCAGAGATTTCATCTAATTTGTGAT
TGTTAAATGCTGAGAGATCTTATCTTAGAAGTTAAAATGCTACTTTGTTC
TCGGCTGTACAATCACACCAGACATTTTGTCACACACCAGACTTTTAGAT
GTCTGGTGCGTCCTAATAAAGACAAAATTTGCTTTTGCCACTAAAATTCC
TGATTGAATATAGTTGGACAGAATTACATATTTATATATTTTATTGTTTA
TTATATTAAAATTCTTATTTCCCAACATTAAAACATTTTTCTTGTGTTTT
CAGAAAGAAGAGACACAAAAGAAGTGAGGCTGGCAAAAAGAAACAGAATG
CCAAAACCAAAGTCAGACAAAAAGTCAGCAAAGCAAAATTCAAAGCGAAA
TTGGAGCTTGGCAAAAAGAATGATACTATCACAAAATTGCAGGAGAGATT
AATGAAATTTTGCCGCAAAACACTGCCAAACTTATCCTCTGTCCGCACAA
AAACAGTCATTGCAACAAATGTTAAGAGCCATATAAATACTACGAACTCT
AGGGATTTCATAATACGAAAACTGGAAGGAATTCCAAAAGTGAATCCAAA
TGATTTTGACTTCATTGATTACAATGTTGGATCTGGAGTTTTTGGGTCTG
TGAAGCTTGGGCGAATAAAAACTTTGAACTCCACAATTGCAGCCAAAGTG
TTGGATGAAAAGACATCAAGTAAAAGTCTTCTGGCTGAGGTTGTTACTCT
TCTTACGTTATCTGGAAGTCAATATTTTCCCTTTTGTTATGGGTTACTGG
ATGATACCGATAAACCTAAGGAACCATTAAATAAATGTATCCTTATGGAG
TTTTTAGGCCAAGTTAATGGAGATATGTATTCCCCTTATCCAACCTTGGC
AAAGATGGCATCTTCACGGTTGTTAAATCACACAAATATAAGACATATTT
TCTCCTTAATTCTTGAAGGTGTTCAATTTCTCCACTTGAAAGGTATTTTG
CATAATGATATAAAGGCTGACAATATTGTAGTATGCAAGGAACGTGTTGT
TCTTATTGATTTTGGCAAAGCAACAATGATAAAATGTCCAGTGACATATA
ATATCAAGAAGGCAGACCAAGTGACTTATAACCTAATACCACAGACATCT
GGCACATGAATTGCGCAACAAAACAAATTCAAAACAAACAAAACTTACAG
ACATTTATTCCATCGGTTATATGTTCAAACACGTGGCAGCTACTCTATCG
TACAAGCCCCTCATTGAACTAGGTAGGCACATGAAGGTGCATAGAATCGG
CATTGATTTTTTTGAGTTTAGAGTAGTACTGATACATTTATGTAATTGGG
GAGGGGTACTTGGTAAAAAGGGGTATGACAGGGGATGTTTCACTGGTCAG
GTTACCTTCCTTCATAGTCCCAG Coding sequence (CDS) from alignment at scaffold_237:404349..406371- >TCONS_00053980 ID=TCONS_00053980|Name=TCONS_00053980|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_237:404349..406371- (Clytia hemisphaerica)
AAAGAAGAGACACAAAAGAAGTGAGGCTGGCAAAAAGAAACAGAATGCCA
AAACCAAAGTCAGACAAAAAGTCAGCAAAGCAAAATTCAAAGCGAAATTG
GAGCTTGGCAAAAAGAATGATACTATCACAAAATTGCAGGAGAGATTAAT
GAAATTTTGCCGCAAAACACTGCCAAACTTATCCTCTGTCCGCACAAAAA
CAGTCATTGCAACAAATGTTAAGAGCCATATAAATACTACGAACTCTAGG
GATTTCATAATACGAAAACTGGAAGGAATTCCAAAAGTGAATCCAAATGA
TTTTGACTTCATTGATTACAATGTTGGATCTGGAGTTTTTGGGTCTGTGA
AGCTTGGGCGAATAAAAACTTTGAACTCCACAATTGCAGCCAAAGTGTTG
GATGAAAAGACATCAAGTAAAAGTCTTCTGGCTGAGGTTGTTACTCTTCT
TACGTTATCTGGAAGTCAATATTTTCCCTTTTGTTATGGGTTACTGGATG
ATACCGATAAACCTAAGGAACCATTAAATAAATGTATCCTTATGGAGTTT
TTAGGCCAAGTTAATGGAGATATGTATTCCCCTTATCCAACCTTGGCAAA
GATGGCATCTTCACGGTTGTTAAATCACACAAATATAAGACATATTTTCT
CCTTAATTCTTGAAGGTGTTCAATTTCTCCACTTGAAAGGTATTTTGCAT
AATGATATAAAGGCTGACAATATTGTAGTATGCAAGGAACGTGTTGTTCT
TATTGATTTTGGCAAAGCAACAATGATAAAATGTCCAGTGACATATAATA
TCAAGAAGGCAGACCAAGTGACTTATAACCTAATACCACAGACATCTGGC
ACATGACACGCCGCCGAGAATCTAAACAAAAATGGCGGATGCTGTAAACT
ACTTGTATTGATGATGGAAAATTCTGAAGCCTCAAAGGATCAAGATCAAA
ATGTTCAAAGTAAAATTATACATAAAAAGAGAAAGAAGAGACACAAAAGA
AGTGAGGCTGGCAAAAAGAAACAGAATGCCAAAACCAAAGTCAGACAAAA
AGTCAGCAAAGCAAAATTCAAAGCGAAATTGGAGCTTGGCAAAAAGAATG
ATACTATCACAAAATTGCAGGAGAGATTAATGAAATTTTGCCGCAAAACA
CTGCCAAACTTATCCTCTGTCCGCACAAAAACAGTCATTGCAACAAATGT
TAAGAGCCATATAAATACTACGAACTCTAGGGATTTCATAATACGAAAAC
TGGAAGGAATTCCAAAAGTGAATCCAAATGATTTTGACTTCATTGATTAC
AATGTTGGATCTGGAGTTTTTGGGTCTGTGAAGCTTGGGCGAATAAAAAC
TTTGAACTCCACAATTGCAGCCAAAGTGTTGGATGAAAAGACATCAAGTA
AAAGTCTTCTGGCTGAGGTTGTTACTCTTCTTACGTTATCTGGAAGTCAA
TATTTTCCCTTTTGTTATGGGTTACTGGATGATACCGATAAACCTAAGGA
ACCATTAAATAAATGTATCCTTATGGAGTTTTTAGGCCAAGTTAATGGAG
ATATGTATTCCCCTTATCCAACCTTGGCAAAGATGGCATCTTCACGGTTG
TTAAATCACACAAATATAAGACATATTTTCTCCTTAATTCTTGAAGGTGT
TCAATTTCTCCACTTGAAAGGTATTTTGCATAATGATATAAAGGCTGACA
ATATTGTAGTATGCAAGGAACGTGTTGTTCTTATTGATTTTGGCAAAGCA
ACAATGATAAAATGTCCAGTGACATATAATATCAAGAAGGCAGACCAAGT
GACTTATAACCTAATACCACAGACATCTGGCACATGACACGCCGCCGAGA
ATCTAAACAAAAATGGCGGATGCTGTAAACTACTTGTATTGATGATGGAA
AATTCTGAAGCCTCAAAGGATCAAGATCAAAATGTTCAAAGTAAAATTAT
ACATAAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053980-exon-scaffold_237-1575043694:406247..406371 | TCONS_00053980-exon-scaffold_237-1575043694:406247..406371 | Clytia hemisphaerica | exon |
| TCONS_00053980-exon-scaffold_237-1575043694:404349..405468 | TCONS_00053980-exon-scaffold_237-1575043694:404349..405468 | Clytia hemisphaerica | exon |
| TCONS_00053980-exon-scaffold_237-1510915933:406247..406371 | TCONS_00053980-exon-scaffold_237-1510915933:406247..406371 | Clytia hemisphaerica | exon |
| TCONS_00053980-exon-scaffold_237-1510915933:404349..405468 | TCONS_00053980-exon-scaffold_237-1510915933:404349..405468 | Clytia hemisphaerica | exon |
| TCONS_00053980-exon-scaffold_237-1491911889:406247..406371 | TCONS_00053980-exon-scaffold_237-1491911889:406247..406371 | Clytia hemisphaerica | exon |
| TCONS_00053980-exon-scaffold_237-1491911889:404349..405468 | TCONS_00053980-exon-scaffold_237-1491911889:404349..405468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:404349..406371 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
The following BLAST results are available for this feature:
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