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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053978 ID=TCONS_00053978|Name=TCONS_00053978|organism=Clytia hemisphaerica|type=transcript|length=683bp
TGAGTCACAATCTTTGTCTGTTTTAGGGCCGTGATATGATTTCAACTCCT
TTTTAATTCGATACTTAACGCGACAGCTATTTTTGGGTTCTTACCCGTAT
TTTGTATCTCTTCTACACAAAATaaggtttcaatatttttttttccgttT
TAGGTAACTTGGTAACTCAAAAAACATTAGTATCGACATGTATATAGACT
GACCGACTGAGGAGAATGGGAATTGACAGaatCAATATCAAGAAGatgaa
tcaaattcaataaGGTATACCAGGTAATCCTTCTTTATTGtctttgtatt
ttgatttggaaaacAAGAATCGTTCCTTCTTATACTGGCGTGAGGCTGTA
GCGAAGGAGTTTATCCGCGCGGCCATACTTTCGATTTCGAATGCGGAACA
TACGAAACTTAGAATACGGGCATTGTGAGATAACAGTGTTTCAGAATCCC
GATCCCGCCACTCCCGCCACTACTTATTTTTAGTTCTCCAGTGGTCAAGA
TAGATAGGATGAATTACAACAATTCTTCTCTCgccgtttcttctttttct
tttttatttcagttttcattttttatgggaGCACAATTGCGATCATATCC
AGGTGAGACgtgtattttccacattttccaaCGTTGTAGTAATATCATAA
TCATACACATCCATTGGCGAGGGCGAGAATATG Run BLAST on NCBI transcript from alignment at scaffold_237:390505..391886- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053978 ID=TCONS_00053978|Name=TCONS_00053978|organism=Clytia hemisphaerica|type=transcript|length=1382bp|location=Sequence derived from alignment at scaffold_237:390505..391886- (Clytia hemisphaerica)
TGAGTCACAATCTTTGTCTGTTTTAGGGCCGTGATATGATTTCAACTCCT
TTTTAATTCGATACTTAACGCGACAGCTATTTTTGGGTTCTTACCCGTAT
TTTGTATCTCTTCTACACAAAATAAGGTTTCAATATTTTTTTTTCCGTTT
TAGGTAACTTGGTAACTCAAAAAACATTAGTATCGACATGTATATAGACT
GACCGACTGAGGAGAATGGGAATTGACAGGTACAACCACCGAAAACACAG
TAAACAAATTACCGTACTTACGTTACCTACGGTAATTTTTCGAAGCTCGT
TTTTTAACTACCCGGAGTTATGGTTTTTTTAACAGGAATCTTCTTCTTAC
TAAGAAGAATCTTAGTCAGGGAAACTGAAAGGAAATATGTAAAACGACGG
TATACACCGTATTACTTCGAATAAACACCCTCTCGAATAAACGCCCCTCC
TAAAATAAATGGAAAATTATTCAATAGACGCCCCCTCAAATAAACGCCCC
CTTTGAATAAACGCCCCTCCTAAAATCGAAAAAGTTAAATAAACGCCGCG
GGCGTTTGTTCGAAATTTGGTACAGTTGAATGTAGCATATAGGGTAGTCG
AAGAAAGATTGTCGAAGGGTCATCGAACAGCCAGGCAAATCCTTGCATTT
GCACGGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGAAAATTAGAAAATTTAAGATTTTGCAATGGTTTTACA
ATCAATTAACACCATTCTTTTTGTTTAGAATCAATATCAAGAAGATGAAT
CAAATTCAATAAGGTATACCAGGTAATCCTTCTTTATTGTCTTTGTATTT
TGATTTGGAAAACAAGAATCGTTCCTTCTTATACTGGCGTGAGGCTGTAG
CGAAGGAGTTTATCCGCGCGGCCATACTTTCGATTTCGAATGCGGAACAT
ACGAAACTTAGAATACGGGCATTGTGAGATAACAGTGTTTCAGAATCCCG
ATCCCGCCACTCCCGCCACTACTTATTTTTAGTTCTCCAGTGGTCAAGAT
AGATAGGATGAATTACAACAATTCTTCTCTCGCCGTTTCTTCTTTTTCTT
TTTTATTTCAGTTTTCATTTTTTATGGGAGCACAATTGCGATCATATCCA
GGTGAGACGTGTATTTTCCACATTTTCCAACGTTGTAGTAATATCATAAT
CATACACATCCATTGGCGAGGGCGAGAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053978-exon-scaffold_237-1575043694:391658..391886 | TCONS_00053978-exon-scaffold_237-1575043694:391658..391886 | Clytia hemisphaerica | exon |
| TCONS_00053978-exon-scaffold_237-1575043694:390505..390958 | TCONS_00053978-exon-scaffold_237-1575043694:390505..390958 | Clytia hemisphaerica | exon |
| TCONS_00053978-exon-scaffold_237-1510915933:391658..391886 | TCONS_00053978-exon-scaffold_237-1510915933:391658..391886 | Clytia hemisphaerica | exon |
| TCONS_00053978-exon-scaffold_237-1510915933:390505..390958 | TCONS_00053978-exon-scaffold_237-1510915933:390505..390958 | Clytia hemisphaerica | exon |
| TCONS_00053978-exon-scaffold_237-1491911889:391658..391886 | TCONS_00053978-exon-scaffold_237-1491911889:391658..391886 | Clytia hemisphaerica | exon |
| TCONS_00053978-exon-scaffold_237-1491911889:390505..390958 | TCONS_00053978-exon-scaffold_237-1491911889:390505..390958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:390505..391886 - |
Blast
The following BLAST results are available for this feature:
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