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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053972 ID=TCONS_00053972|Name=TCONS_00053972|organism=Clytia hemisphaerica|type=transcript|length=2907bpRun BLAST on NCBI transcript from alignment at scaffold_237:282761..307027- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053972 ID=TCONS_00053972|Name=TCONS_00053972|organism=Clytia hemisphaerica|type=transcript|length=24267bp|location=Sequence derived from alignment at scaffold_237:282761..307027- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00053972 vs. Swiss-Prot (Human)
Match: WLS (Protein wntless homolog OS=Homo sapiens GN=WLS PE=1 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 5.552e-89 Identity = 192/561 (34.22%), Postives = 303/561 (54.01%), Query Frame = 1
Query: 34 MGQVLLESLTTKQICLFGATLFLFSTAFFVIGGTKGADPASANVHIANLFHQKDVTAFGDDNRWEFYRVAKGPMRNPTAFEGSIFELMQKNPLSASTN-LIFSSKIPHPGAKMHPAYQFMLVIMNIRVDYMQQGMGRAMIIDCDMEFNAKLAYSD--VENPTEEKHWTFLQRVYNQSRPLICTFSGMRSREDGGSKTGYMHRYQQWNHYTCQDQHFFELGSVPHKHYLVNVHLPGDGQNKECLAGGRHFLSGVDFVEIHQNGEYTISLFVSKTVMFPFIIGALLFFVRRIKRESRQWLLLERCILWLGSATSILLLPIDWFTLVTDMPYMSFFSDLRQGFFYACLLVFWCLFAGEHILDQEERNQLSFYKYEIGSILIGCVSLFLFDTVERGVQMKNPFHTVWKRHSGEKXXXXXXXXXXXXXXXYCLFFMRLLYFVRKNINMKSAALPAMQTERRLFYENKIYRFRVLLYATLSTVVITIICFIMDQVNETTWKFQDNSMNDYIIVSSAMHFGVFGMWGTYVFAVLILYSPD----GKSNTSGNAVYYKRSEHLLSAGST 1695
M ++E+++TK++C+ G L +F F++GG P +A +++ K V A + ++ +++ V GP I ++ + P N ++FS IP P +M P +QFML I+ + + + R + ++ + LAY D TE H +RV R L CTF+ ++ E G RY Y C F E+GSV HK YL+N+ LP + + K + G + + V IHQNG +T F KT + P I ++++ RRI SR +LLE+ I LG + + + +P++WF++ D +M F D+RQG FYA LL FW +F GEH++DQ ERN ++ Y ++G I +G LF+FD ERGVQ+ NPF+++W G + A AFI +A I +Y LF +++ V +NI+ K ++LPAM RRL YE I+RF+ L+ TL+ +T+I FI+ QV E WK+ ++ V+SA G++GMW YVFA++ LY+P G+ ++G+ + E L+ T
Sbjct: 1 MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMS----VKCVDARKNHHKTKWF-VPWGPNHC-----DKIRDIEEAIPREIEANDIVFSVHIPLPHMEMSPWFQFMLFILQLDIAFKLNNQIRE---NAEVSMDVSLAYRDDAFAEWTEMAH----ERV---PRKLKCTFTSPKTPEHEG-------RY-----YECDVLPFMEIGSVAHKFYLLNIRLPVNEKKKINVGIGE--IKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDIGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQ----VNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTIT 523 The following BLAST results are available for this feature:
BLAST of TCONS_00053972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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