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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053947 ID=TCONS_00053947|Name=TCONS_00053947|organism=Clytia hemisphaerica|type=transcript|length=885bp
ATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAGAAGATTGT
TGATATCGATGGAAAGGAACAACGtcaaacagagttgaatatgcaaagtt
tatAGACGACGAATAACGATAGTTTTTCTGGAGATGACCCATTCTTTCGA
TACTAGATTACTTTTAGCAGCTCAAAATTAACAATATCATAATGTTCAAG
AGGAAACCAAAAGCAACTATCTGAAAAGGTATGCTTTCGTATATTtgaca
gttttgtttcatttaaaacaagctctttttttggcaccaagtcaaaaact
ttacagtttttcaaatctgtatgagaaaggcaactgcatacacttgattt
aaaatttcctaCACAAATTCTAAAGCGAGCATCATTCTTTGACAAAAAAG
TATCACTTTTTGAAAGGATAGATATGGTATGTTGTCGATGCAaggggtgc
taattttggttgattgtttcatatttcccatgttcaacgtacgaaccgtg
gaaacgtattctttcttactcaaataagaaaatgatcttttataatccat
taaacaatcttccaaaagcaaTGTGTTACATTCTAAGAGCAACTCAACGA
ACGTCGTGTTTATGAGGCCCTGGACTTAACGACATGCCATTATTCAATGA
TATTGGCTTTTAACATTCCAATGAAAAGTTTGCACTATTCaagctataat
ttttgaaaagggatgcttcttattcttgtaaaaaccttcatttgtaaaaa
tgatgcTCTCAAATGATAAACCTTATTGTTTGTGGTAGGATAAATGGAAT
TCAAAAAGCTGTGgctttttttattcaagaaaatattatgtttcttatgt
ttatcaaaaatcactctgctttctggtctttgttc Run BLAST on NCBI transcript from alignment at scaffold_237:501523..504223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053947 ID=TCONS_00053947|Name=TCONS_00053947|organism=Clytia hemisphaerica|type=transcript|length=2701bp|location=Sequence derived from alignment at scaffold_237:501523..504223+ (Clytia hemisphaerica)
ATATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAGAAGGTATG
TTTTCGTATATTtgacagttttgtttcatttaaaaCAAGCTCCTTTTTGG
CACCAAGTCAAAAACCTTACACTTTttcaaatctgtatgagaaaggcaac
tgcatacacttgatttaaaatttcttaCACAAATTCTAAAGCGAGCATCa
ttctttgacaaaaaattatcaCTTTTTGAAAGGATAGATATGGTATGTTG
TTTATGCAaggggtgctaattttggttgattgtttcatatttcccatgtt
caacGTACGAACCGTGGANGCtaattttggttgattgtttcatatttccc
atgttcaacgtacgaaccgtggaaacatattctttcttactcaaataaga
agATGATCTTTTATAAtccattaaacaatcttccaaaagcaatgTGTTAC
ATTCTAAGAGCAACCCAACGAAAGTCGTGTTTATGAGGCCCTGGACTTAA
CGACATGCCATAATTCAATGATATTGGCTTTTAACATTCGGATGAAAAGT
TTGCATTATTCaagctataatttttgaaaagggatgcttcttattcttgt
aaaaacctccatttgtaaaaatgatgcTCTCAAATGATAAACCTTATTGT
TTGTGGTAGGATAAATGGAATTTAAAAAGCTgtggtttttttttattcaa
ttaaatATTATGTTTCTTATGTTCATCAAAAATCACTCTGCTTTCTGGCc
tttgttctttatttcatttaagaTTATTGATATCGATGGAAAGGAACAAC
GtcaaacagagttgaatatgcaaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTCAA
GAGGAAACCAAAAGCAACTATCTGAGAAGGTATGTTTTCGTATATTtgac
agttttgtttcatttaaaaCAAGCTCTTTTTTTTGCACCAAGTCAAAAAC
CTAacactttttcaaatttgtatgagaaaggcaactgcatacacttgatt
taaaatttcctaCACAAATTCTAAAGCGAGCATCattctttgacaaaaaa
ttatcaCTTTTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAACGtattctttcttactca
aataagaaaatgatcttttataatccattaaacaatcttccaaaagcaat
gTGTTACATTCTAAGAGCAACTCAACGAAAGTTGTGTTTATGAGGCCCTG
GACTTAACGACAAGCCATAATTCAATGATATTGGCTTTTAACATTCGAAT
GAAAAGTTTGCATTATTCaagctataatttttgaaaagggatgCTTCTTA
TTCTNNNNNNNNNNNNNNNNCAAATGATAAACCTTATTGTTTGTGGTAGG
ATAAATGGAATTTAAAAAGCTGTGgctttttttattcaagaaaatattat
gtttcttatgtgtatcaaaaatcactctgctttctggtctttgttcttta
tttcaCTTAAGATTGTTGATATCGATGGAAAGGAACAACGtcaaacagag
ttgaatatgcaaagtttatAGACGACGAATAACGATAGTTTTTCTGGAGA
TGACCCATTCTTTCGATACTAGATTACTTTTAGCAGCTCAAAATTAACAA
TATCATAATGTTCAAGAGGAAACCAAAAGCAACTATCTGAAAAGGTATGC
TTTCGTATATTtgacagttttgtttcatttaaaacaagctctttttttgg
caccaagtcaaaaactttacagtttttcaaatctgtatgagaaaggcaac
tgcatacacttgatttaaaatttcctaCACAAATTCTAAAGCGAGCATCA
TTCTTTGACAAAAAAGTATCACTTTTTGAAAGGATAGATATGGTATGTTG
TCGATGCAaggggtgctaattttggttgattgtttcatatttcccatgtt
caacgtacgaaccgtggaaacgtattctttcttactcaaataagaaaatg
atcttttataatccattaaacaatcttccaaaagcaaTGTGTTACATTCT
AAGAGCAACTCAACGAACGTCGTGTTTATGAGGCCCTGGACTTAACGACA
TGCCATTATTCAATGATATTGGCTTTTAACATTCCAATGAAAAGTTTGCA
CTATTCaagctataatttttgaaaagggatgcttcttattcttgtaaaaa
ccttcatttgtaaaaatgatgcTCTCAAATGATAAACCTTATTGTTTGTG
GTAGGATAAATGGAATTCAAAAAGCTGTGgctttttttattcaagaaaat
attatgtttcttatgtttatcaaaaatcactctgctttctggtctttgtt
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053947-exon-scaffold_237-1491911889:501523..501567 | TCONS_00053947-exon-scaffold_237-1491911889:501523..501567 | Clytia hemisphaerica | exon |
| TCONS_00053947-exon-scaffold_237-1510915933:501523..501567 | TCONS_00053947-exon-scaffold_237-1510915933:501523..501567 | Clytia hemisphaerica | exon |
| TCONS_00053947-exon-scaffold_237-1575043694:501523..501567 | TCONS_00053947-exon-scaffold_237-1575043694:501523..501567 | Clytia hemisphaerica | exon |
| TCONS_00053947-exon-scaffold_237-1491911889:503384..504223 | TCONS_00053947-exon-scaffold_237-1491911889:503384..504223 | Clytia hemisphaerica | exon |
| TCONS_00053947-exon-scaffold_237-1510915933:503384..504223 | TCONS_00053947-exon-scaffold_237-1510915933:503384..504223 | Clytia hemisphaerica | exon |
| TCONS_00053947-exon-scaffold_237-1575043694:503384..504223 | TCONS_00053947-exon-scaffold_237-1575043694:503384..504223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:501523..504223 + |
Blast
The following BLAST results are available for this feature:
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