TCONS_00053939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053939
Unique NameTCONS_00053939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053939 ID=TCONS_00053939|Name=TCONS_00053939|organism=Clytia hemisphaerica|type=transcript|length=343bp
aaaaaaatgatacatGGAATGGAAACGAAAAACTCTATCAACGGAGTTCG
CCTGCTCGGTGTGATACCCTAGAGCAATTGATCGAATTTGAGCGAAGCCT
GTCGAACCAGTCGGAATATGAGAAACTGATTGACCTCCTGATGACTGTTG
GTGGAAATGACGCCCGAGCCATCTTAAGAAGAATGCTGGCATTGATAACA
ACGAACAAAGTGCTCTCGTCACTTAACTGGGATGGGACAGGGAATAAAAC
GGGCTTTGATGCAACTTTTCCCAACTTATTGGAGGCTCTGCAAAAATGTA
CTATCGCGAAAGTCAAGGCGGACGATGCTGTTGTCAAGGACgg
Run BLAST on NCBI

protein sequence of TCONS_00053939-protein

>TCONS_00053939-protein ID=TCONS_00053939-protein|Name=TCONS_00053939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
KNDTWNGNEKLYQRSSPARCDTLEQLIEFERSLSNQSEYEKLIDLLMTVG
GNDARAILRRMLALITTNKVLSSLNWDGTGNKTGFDATFPNLLEALQKCT
IAKVKADDAVVKD
Run BLAST on NCBI

transcript from alignment at scaffold_237:411275..412700+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053939 ID=TCONS_00053939|Name=TCONS_00053939|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at scaffold_237:411275..412700+ (Clytia hemisphaerica)
aaaaaaatgatacatGGAATGGAAACGAAAAACTCTATCAACGGAGTTCG
CCTGCTCGGTGTGATACCCTAGAGCAATTGATCGAATTTGAGCGAAGCCT
GTCGAACCAGTCGGAATATGAGAAACTGGTACGTTTGAAGATGTTTTTag
caaatatctaaatcaaGCTTCTAACGTCAgttatttgttttgatgctttt
tctaAGGGAAGATATTAtcaatctattttttttttttttgcaataactct
cCACCAAGATCTGCAAATTAGGtagaaaatttgttttcataaATACAATG
GAACTGTTTTATATTTCTATTCATGCTATCAGATTGACCTCCTGATGACT
GTTGGTGGAAATGACGCCCGAGCCATCTTAAGAAGAATGCTGGCATTGTA
AGTTATTTCTATAGCTCttctgtttatttacttttcaacCAATGTAGAAT
TTTATCTGGCGGATTAGGGAATTGTCTGCCCATTCCAATACACTGAATGa
acgaaattttgatgacatctGATTAATTTTGATTGTAGAACCGGCAACTC
TCTTTCGTATTTAAATATCAGCTTACTATAATTTGATATAATTGATTTAT
GTCGCCGAATTGAAGAATCGAATGTTACTATGTATTTATGTAATATGATT
TCACTCCGCTTTTATTTTTTAGGATAACAACGAACAAAGTGCTCTCGTCA
CTTAACTGGGATGGGACAGGGAATAAAACGGGCTTTGATGCAACTTTTCC
CAACTTATTGGAGGCTCTGCAAAGTAAGTACGATAGTGTGTGCTCTCAAT
TACCCAAATTGTTTAGGGAgctgaaaaatctcaaaaaggctaccttaagg
gaactaatcttagcgggaacttattttcgcaGTGAGTGGGCacgaaattt
tcatcatttgcGGAACAAATTTTCGCTGTAGACACTCACTTTTTGtctaa
attctttcattttcctaggggttttcaAGGATTTCTAGTAAAATTTGCAT
TTCGatcgcggaactaattttcgcggtagacaccaaaaaacgcgaaaatt
agttccgttAAGGTAAACATTGGTTTAAACAGATTATTTAGAGCAAAGTT
CTCCTTTGACAGCtgaaagtattttcaaaaattgattaaaggGTTAATAA
CAAGATCCGATGGCAGCTGAAAAACATTGTAAACTTCGCAAGTAGGGGAG
GGGCAATTTCACGTCGAAATATTATTGAAATCTGGAAAAACAATTTTCAG
TTATTTATTGGAACAAACAACTTATTATATTATGGATACATTTAAGAATT
TTTGCTACCTTCTGAAAATCCTCCATTTGAAATGTATGAACGTATTTATT
ATAAAAGTTTTAACACACTTACCTTAGAATGTACTATCGCGAAAGTCAAG
GCGGACGATGCTGTTGTCAAGGACgg

Coding sequence (CDS) from alignment at scaffold_237:411275..412700+

>TCONS_00053939 ID=TCONS_00053939|Name=TCONS_00053939|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_237:411275..412700+ (Clytia hemisphaerica)
aaaaatgatacatGGAATGGAAACGAAAAACTCTATCAACGGAGTTCGCC
TGCTCGGTGTGATACCCTAGAGCAATTGATCGAATTTGAGCGAAGCCTGT
CGAACCAGTCGGAATATGAGAAACTGATTGACCTCCTGATGACTGTTGGT
GGAAATGACGCCCGAGCCATCTTAAGAAGAATGCTGGCATTGATAACAAC
GAACAAAGTGCTCTCGTCACTTAACTGGGATGGGACAGGGAATAAAACGG
GCTTTGATGCAACTTTTCCCAACTTATTGGAGGCTCTGCAAAAATGTACT
ATCGCGAAAGTCAAGGCGGACGATGCTGTTGTCAAGGACaaaaatgatac
atGGAATGGAAACGAAAAACTCTATCAACGGAGTTCGCCTGCTCGGTGTG
ATACCCTAGAGCAATTGATCGAATTTGAGCGAAGCCTGTCGAACCAGTCG
GAATATGAGAAACTGATTGACCTCCTGATGACTGTTGGTGGAAATGACGC
CCGAGCCATCTTAAGAAGAATGCTGGCATTGATAACAACGAACAAAGTGC
TCTCGTCACTTAACTGGGATGGGACAGGGAATAAAACGGGCTTTGATGCA
ACTTTTCCCAACTTATTGGAGGCTCTGCAAAAATGTACTATCGCGAAAGT
CAAGGCGGACGATGCTGTTGTCAAGGACaaaaatgatacatGGAATGGAA
ACGAAAAACTCTATCAACGGAGTTCGCCTGCTCGGTGTGATACCCTAGAG
CAATTGATCGAATTTGAGCGAAGCCTGTCGAACCAGTCGGAATATGAGAA
ACTGATTGACCTCCTGATGACTGTTGGTGGAAATGACGCCCGAGCCATCT
TAAGAAGAATGCTGGCATTGATAACAACGAACAAAGTGCTCTCGTCACTT
AACTGGGATGGGACAGGGAATAAAACGGGCTTTGATGCAACTTTTCCCAA
CTTATTGGAGGCTCTGCAAAAATGTACTATCGCGAAAGTCAAGGCGGACG
ATGCTGTTGTCAAGGACaaaaatgatacatGGAATGGAAACGAAAAACTC
TATCAACGGAGTTCGCCTGCTCGGTGTGATACCCTAGAGCAATTGATCGA
ATTTGAGCGAAGCCTGTCGAACCAGTCGGAATATGAGAAACTGATTGACC
TCCTGATGACTGTTGGTGGAAATGACGCCCGAGCCATCTTAAGAAGAATG
CTGGCATTGATAACAACGAACAAAGTGCTCTCGTCACTTAACTGGGATGG
GACAGGGAATAAAACGGGCTTTGATGCAACTTTTCCCAACTTATTGGAGG
CTCTGCAAAAATGTACTATCGCGAAAGTCAAGGCGGACGATGCTGTTGTC
AAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034052XLOC_034052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053939-exon-scaffold_237-1491911889:411275..411402TCONS_00053939-exon-scaffold_237-1491911889:411275..411402Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1510915933:411275..411402TCONS_00053939-exon-scaffold_237-1510915933:411275..411402Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1575043694:411275..411402TCONS_00053939-exon-scaffold_237-1575043694:411275..411402Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1491911889:411607..411671TCONS_00053939-exon-scaffold_237-1491911889:411607..411671Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1510915933:411607..411671TCONS_00053939-exon-scaffold_237-1510915933:411607..411671Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1575043694:411607..411671TCONS_00053939-exon-scaffold_237-1575043694:411607..411671Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1491911889:411947..412047TCONS_00053939-exon-scaffold_237-1491911889:411947..412047Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1510915933:411947..412047TCONS_00053939-exon-scaffold_237-1510915933:411947..412047Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1575043694:411947..412047TCONS_00053939-exon-scaffold_237-1575043694:411947..412047Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1491911889:412652..412700TCONS_00053939-exon-scaffold_237-1491911889:412652..412700Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1510915933:412652..412700TCONS_00053939-exon-scaffold_237-1510915933:412652..412700Clytia hemisphaericaexon
TCONS_00053939-exon-scaffold_237-1575043694:412652..412700TCONS_00053939-exon-scaffold_237-1575043694:412652..412700Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053939-proteinTCONS_00053939-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:411275..412700 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	39.6316	31.3174	20.3929	16.252	5.76343	10.3564	8.85177	2.09699	4.72678	4.38872	0	0	0	0	0	0	0.255983	0	0	0.275986	4.54814	5.83497	0	0	0.587722	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032071DUF4806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top