TCONS_00053937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053937
Unique NameTCONS_00053937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053937 ID=TCONS_00053937|Name=TCONS_00053937|organism=Clytia hemisphaerica|type=transcript|length=215bp
ATATTTTCCTTCATTATTATCTCCATCATATTTCTTTGATAGGATCTCGT
GGTAGAATTTCTCGAACCTATTACCTCCATCATACTGCAGCAAGGTTTCA
TCTTCAATATCGCTGTTATCAGTTTCCATATATTTGTCAAGTGAATCGAT
TATCTCCGTAATGTCTTGTTCAGTTGATCCATAAGTATCAcctctgaagt
tgagcccactTTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_237:340738..340985+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053937 ID=TCONS_00053937|Name=TCONS_00053937|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at scaffold_237:340738..340985+ (Clytia hemisphaerica)
ATATTTTCCTTCATTATTATCTCCATCATATTTCTTTGATAGGATCTCGT
GGTAGAATTTCTCGAACCTATTACCTCCATCATACTGCAGCAAGGTTTCA
TCATTATCTCCACCATATTTTGGCGAGGTTTCATCTTCAATATCGCTGTT
ATCAGTTTCCATATATTTGTCAAGTGAATCGATTATCTCCGTAATGTCTT
GTTCAGTTGATCCATAAGTATCAcctctgaagttgagcccactTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034050XLOC_034050Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053937-exon-scaffold_237-1491911889:340738..340831TCONS_00053937-exon-scaffold_237-1491911889:340738..340831Clytia hemisphaericaexon
TCONS_00053937-exon-scaffold_237-1510915933:340738..340831TCONS_00053937-exon-scaffold_237-1510915933:340738..340831Clytia hemisphaericaexon
TCONS_00053937-exon-scaffold_237-1575043694:340738..340831TCONS_00053937-exon-scaffold_237-1575043694:340738..340831Clytia hemisphaericaexon
TCONS_00053937-exon-scaffold_237-1491911889:340865..340985TCONS_00053937-exon-scaffold_237-1491911889:340865..340985Clytia hemisphaericaexon
TCONS_00053937-exon-scaffold_237-1510915933:340865..340985TCONS_00053937-exon-scaffold_237-1510915933:340865..340985Clytia hemisphaericaexon
TCONS_00053937-exon-scaffold_237-1575043694:340865..340985TCONS_00053937-exon-scaffold_237-1575043694:340865..340985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_237supercontigscaffold_237:340738..340985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	1.60839	1.12607	4.18445	0	0.889964	0	0	0	0	0	1.0282	0	0	1.292	0	0	0	0	1.28045	0	1.95551	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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