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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053927 ID=TCONS_00053927|Name=TCONS_00053927|organism=Clytia hemisphaerica|type=transcript|length=610bp
GATAATTCCGTTACTTCGAGTTCAAGCGAAACCGAAGTCTCTTATTATTT
CATACCGACACCTCGAAAGAATGTCGGTTGTATTTCAAGGATACAGCATT
TCTATGACGACTGGAAATGGAATAAGGAGTATAGAAGGAGAAACCGGGAA
GCTAGAAAACAAAGTATAATAAAATGGCAAGAAGAAATCGAACGCAAATG
GAAGTTGGGTAGAGATCTAAGATATCTAACTCCGAAAATTCCCGACCAAA
ATATCACACCGCCAAGCAATAATATGGTAATATCAAATGAAGAGAAGTGT
AACATAATCAATGTTTACATTTATGGCATTCCCTGGTTAAATAGAAACGA
TATTAACGTAGATTTTGATGAACCAATCCAACCATATATCGCTTTGCAGA
TGGACCACAACCAGAATATCTTTGATTTAAAAGAAAGAATTGGTCAAATA
TACAATATCCCTCCTAAAAAGCAGATACTGTTTACTGCTCCACCAAAGAA
ACAACTCGATGATGTAAAGATTCTTGACGACGAATCTGTTCCATTGATTC
AATATTTAAACCCTTTAGATCACATACATGGTTTATTACAGGTGACAAAA
GATTCCTTTG Run BLAST on NCBI transcript from alignment at scaffold_237:210127..213102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053927 ID=TCONS_00053927|Name=TCONS_00053927|organism=Clytia hemisphaerica|type=transcript|length=2976bp|location=Sequence derived from alignment at scaffold_237:210127..213102+ (Clytia hemisphaerica)
GATAATTCCGTTACTTCGAGTTCAAGGtacgcattttttataagaacatt
ctacATTTTCttaaagccttcaaatgttcttaacttttcgagtttgaAAC
CCTATTTGAATAACCTTTAAAAACTTCCAAATATGCCATTTTATTTACTC
TGTATTTTATAGATTCTATCTTGCGGGGGGGGCTATTAGGGTCAAACCAC
CatttactttaatcggattaaatttagCGAGCGAgagaaatcgcgaaatt
ttttggatttaatttcgcgagttttgaaaaatttcgcgaataTACCTgaa
aaacagctgaaaaatactgtagccattttttgccacaAATGAAGACTTTG
CCTTTGCACCTTGGACTGGTTTCTCCGCCAAAAAtgcgattttaaaaatt
ttgtggtggatttaattttgcgagtcAGGAATCTCATGCGTTTTCACGAG
TTTTAATTTcacgaaaatggcaaaaattcgcgaaatcgcgaaatttaatc
tcgcgaaagttaatccgattaaagtaataTTAGTTGTCTTCCTTCTACTC
ACCACCAATTTTTTCCATCCaaattgttcttaggtttttgcAAAACAAAA
GGCCACCTGTTTTTATTTAGATAATGGCGTTGCCTCTTAACGATAGTGAA
TAATTGCACTTTTGATGAGGACGGCGCAGTGACTGAagtgatttggaata
acccgcagtttgACCTGCAAAACGGTAAATATAAAAGACTTCCTAACCGT
CGTCCTAATTCAATTGGGATATATAGATAAATCATAAGATAACCGTCTCC
GCTCCTGTAAAACACAGATATATAATTTCGCTTTTTTATCTTTCTAGCGA
AACCGAAGTCTCTTATTATTTCATACCGACACCTCGAAAGAATGTCGGTT
GTATTTCAAGGATACAGCATTTCTATGACGACTGGAAATGGAATAAGGAG
TATAGAAGGAGAAACCGGGAAGCTAGAAAACAAAGTATAATAAAATGGCA
AGAAGAAATCGAACGCAAATGGAAGTTGGGTAGAGATCTAAGGTACGTTC
TGAACTTTGATCCCTAACGAggtttcccagctggcacacaacgtagtttc
aacgtttatctaacgttcacaacatccatgtaacgttagatgaacgttga
agcaAGGTTTTGAGCCAGCTGGGTCTACATTAAACCTCggtaaaatgaat
tttttttttccaaagatttttttttagtttaatgtattagtagggggaaa
tttgttttttttttgaggtcgctcgacttttttagtcaaagcacttgtta
tacatttttggaaagctaagggataggggaatcaaaataatttgggtgcc
aatttttttcggacactttggtgtgattttcggacaaatacgacggtctc
aggcaaaaatcatagggtgaaaaattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNattgcgagtataggtgatttcttta
cctaactcgagatattaatccttaaaaacagtgtttttcagtgtttttca
gccagaaacagctgttttgtccagttttcgCACTTTCGGAAGTTGAGGTT
TCACAGTGTCCAGAATTTTAGTTCCGCCTTCAGCTTTTCTTTTATGTGCA
GATATTTCAATTTCGAATTATAGTTCATAAATAAACGGAGAAACATTTTT
TCCTAGTTTAAACTAACTGACGAATGCTTGAAAGagcaagaaactttaag
tattatggaaaaaagtttctccGTTCATTTCTAAACTATGATAACGATCT
ACCAGGGTATAGGAGCACTCTATTGAGTTTAAAGACAGTCATACACAggt
ggggggggggtcttgcagttactccttgacactatatgtggagtaactgc
aattttggacattttctacagacaccaccacccttgcagttattccatag
tgtactaactgattttaccctcaaaattggtgtatcccaaccccaaaaat
gccaaatttggcaattttttcactgaattcctcatttttgataccatttt
actgggtacgtcttattaacgaccgttcaagagttaaatatctcaatcat
tttccaagtttatctttcatgccttgattgaagaaaaaatttgtgatttt
tttttgacttttgaaaaaaatgttttgaatttatttgcttccggaatttt
taaaaacctaaaattttaagtgaaaattgaaaaatgtgctcacttagtac
accatatcctaccaaaatcgacaattttgggcttaagcaccacccatgtt
gcagttagtccactggtggagtaactgttttcccaaattttggtttatat
accaccacggtagtaattgtcatagtgtttatataataactgcatgaccc
ccctgTCATACAATCAATTTCGAATTAAATACCTTAGATATCTAACTCCG
AAAATTCCCGACCAAAATATCACACCGCCAAGCAATAATATGGTAATATC
AAATGAAGAGAAGTGTAACATAATCAATGTTTACATTTATGGCATTCCCT
GGTTAAATAGAAACGATATTAACGTAGATTTTGATGAACCAATCCAACCA
TATATCGCTTTGCAGATGGACCACAACCAGAATATCTTTGATTTAAAAGA
AAGAATTGGTCAAATATACAATATCCCTCCTAAAAAGCAGATACTGTTTA
CTGCTCCACCAAAGAAACAACTCGATGATGTAAAGATTCTTGACGACGAA
TCTGTTCCATTGATTCAATATTTAAACCCTTTAGATCACATACATGGTTT
ATTACAGGTGACAAAAGATTCCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053927-exon-scaffold_237-1491911889:210127..210152 | TCONS_00053927-exon-scaffold_237-1491911889:210127..210152 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1510915933:210127..210152 | TCONS_00053927-exon-scaffold_237-1510915933:210127..210152 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1575043694:210127..210152 | TCONS_00053927-exon-scaffold_237-1575043694:210127..210152 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1491911889:210974..211168 | TCONS_00053927-exon-scaffold_237-1491911889:210974..211168 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1510915933:210974..211168 | TCONS_00053927-exon-scaffold_237-1510915933:210974..211168 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1575043694:210974..211168 | TCONS_00053927-exon-scaffold_237-1575043694:210974..211168 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1491911889:212714..213102 | TCONS_00053927-exon-scaffold_237-1491911889:212714..213102 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1510915933:212714..213102 | TCONS_00053927-exon-scaffold_237-1510915933:212714..213102 | Clytia hemisphaerica | exon |
| TCONS_00053927-exon-scaffold_237-1575043694:212714..213102 | TCONS_00053927-exon-scaffold_237-1575043694:212714..213102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_237 | supercontig | scaffold_237:210127..213102 + |
Blast
The following BLAST results are available for this feature:
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