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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053925 ID=TCONS_00053925|Name=TCONS_00053925|organism=Clytia hemisphaerica|type=transcript|length=3030bpRun BLAST on NCBI protein sequence of TCONS_00053925-protein >TCONS_00053925-protein ID=TCONS_00053925-protein|Name=TCONS_00053925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MLNICIAKQHWHRVLPSIARLSTSKAIEDGLYSGPEIKTAIPGPISLEKKRun BLAST on NCBI transcript from alignment at scaffold_237:103434..117484+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053925 ID=TCONS_00053925|Name=TCONS_00053925|organism=Clytia hemisphaerica|type=transcript|length=14051bp|location=Sequence derived from alignment at scaffold_237:103434..117484+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:103434..117484+ >TCONS_00053925 ID=TCONS_00053925|Name=TCONS_00053925|organism=Clytia hemisphaerica|type=CDS|length=16965bp|location=Sequence derived from alignment at scaffold_237:103434..117484+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053925 vs. Swiss-Prot (Human)
Match: GABT (4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3) HSP 1 Score: 358.607 bits (919), Expect = 5.099e-117 Identity = 177/357 (49.58%), Postives = 247/357 (69.19%), Query Frame = 3
Query: 93 QHWHRVL-PSIARLSTSKAIEDGL--YSGPEIKTAIPGPISLEKKSEMIGLNASADAIFFFVDYAKSKGNYMVDVDENVILDAHGQISSLPLGYNHPALRKAVESDDVKNYLINRPVLGILPPSXXXXXXXXXXXXXXPKGMDYVQTMMCGSCSNENAFKSAFIKYMNDERGYEMPSEEDLLSCMSAQAPGTPDLVILSFTTGFHGRTIGCLAASKTKPMYRVDIPIHDWPTADFPHLKYPLNEHEKENREIEDRALETVRKTIMESNARGRKVAAAIIEPIQGDGGDNHATPYFFKELQKILKEFNAAFIVDEVQSGGGGSGKIWAHEHWGLEEPPDMVTFAKKMQVGGFYYKKDY 1154
QH +R+L P +S + A D Y GP +KT +PGP S E ++ + +A+A+ FF +Y +S+GNY+VDVD N +LD + QISS+P+GY+HPAL K ++ + +NRP LGILPP + + L ++LL V PKGM + TM CGSCSNENA K+ F+ Y + ERG S+E+L +CM QAPG PD ILSF FHGRT+GCLA + +K ++++DIP DWP A FP LKYPL E KEN++ E R LE V I++ + + VA I+EPIQ +GGDNHA+ FF++L+ I ++ AF+VDEVQ+GGG +GK WAHEHWGL++P D++TF+KKM GGF++K+++
Sbjct: 15 QHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMKQL-NIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEF 370 HSP 2 Score: 83.5741 bits (205), Expect = 5.099e-117 Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query: 1183 FWKSNKK*NPPYRIFNTFMGDPARNAMLKAIIETIEEENLMQKVTNTGKYFLEQLKGLQESKPDHFMDARGVGFQVGISCKTPEISSKIYHEIRQMGLNTGVSGTQTIRFRPSLIFNNSH 1542
F K + N PYRIFNT++GDP++N +L +I I+ E+L+ + GK L L LQ P RG G I +K+ R G+ G G ++IRFRP+L+F + H
Sbjct: 365 FHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVFRDHH 484 The following BLAST results are available for this feature:
BLAST of TCONS_00053925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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