|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053923 ID=TCONS_00053923|Name=TCONS_00053923|organism=Clytia hemisphaerica|type=transcript|length=1924bpRun BLAST on NCBI protein sequence of TCONS_00053923-protein >TCONS_00053923-protein ID=TCONS_00053923-protein|Name=TCONS_00053923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp MSKDLDLVILKKVDTDGCIDTYKLSKELEQDHQLFVGAVKRLQSLGEIISRun BLAST on NCBI transcript from alignment at scaffold_237:55005..92681+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053923 ID=TCONS_00053923|Name=TCONS_00053923|organism=Clytia hemisphaerica|type=transcript|length=37677bp|location=Sequence derived from alignment at scaffold_237:55005..92681+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:55005..92681+ >TCONS_00053923 ID=TCONS_00053923|Name=TCONS_00053923|organism=Clytia hemisphaerica|type=CDS|length=19539bp|location=Sequence derived from alignment at scaffold_237:55005..92681+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053923 vs. Swiss-Prot (Human)
Match: SYFA (Phenylalanine--tRNA ligase alpha subunit OS=Homo sapiens GN=FARSA PE=1 SV=3) HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0 Identity = 312/494 (63.16%), Postives = 401/494 (81.17%), Query Frame = 3
Query: 291 VILKKVD-TDGCIDTYKLSKELEQDHQLFVGAVKRLQSLGEIISANLEQSERWILTKEGLLMAENGSHEANLFNSIPPETGLLQSEMQNLPLGKNAKIGFSKAMTEGWVRIDKTAEGGPRIFRKVESISDHVNENLVAIQNGQ--KVEDGKINDLKKRKLITKEIIKSYSVKKGPAFTLTIEKPEADLTTDLLMSGAWKTKTFKDYNFDALGIPPTCGHLHPLLKVRTQYRQIFLEMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFLSAPKEAKLQEMPEEYIEKVKTIXXXXXXXXXXXXXDWTIDEAKKNLLRTHTTAVSTRMLYKLAKRERFTPAKYFSIDRVFRNESLDATHLAEFHQIEGVVADRDLSLGHLIGILHEFFRKLGIEKLRFKPAFNPYTEPSMEIFSYHEGLKKWVEIGNSGIFRPEMLLPMGFPKNVSVIAWGLSLERPTMIKYGISNIRDLIGHKIDLEMVQKNPICRLD 1763
++L++++ +DG +D+ +L+ EL +HQ VGAVK LQ+LGE+I A L ++ W LT EG +A GSHEA +F SIPPE GL QSE+ LP GK +GFSKAM+ W+R+DK+A GPR+FR V+S+ D V L ++ GQ K+ + + ++L+KRKL+ + +K+Y V KG AF+ +I K E +L+ +++ SG+W+ + FK YNF A G+ P GHLHPLLKVR+Q+RQIFLEMGFTEMPT+NF+ESSFWNFDALFQPQQHPARD HDTFFL P EA ++P +Y+++VK HS GG+GSQGY+Y+W +DEA+KNLLRTHTT+ S R LY+LA+++ FTP KYFSIDRVFRNE+LDATHLAEFHQIEGVVAD L+LGHL+G+L EFF KLGI +LRFKPA+NPYTEPSME+FSYH+GLKKWVE+GNSG+FRPEMLLPMG P+NVSVIAWGLSLERPTMIKYGI+NIR+L+GHK++L+MV +P+CRLD
Sbjct: 9 LLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPE-GLAQSELMRLPSGK---VGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEA--LQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLD 496 The following BLAST results are available for this feature:
BLAST of TCONS_00053923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.