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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053918 ID=TCONS_00053918|Name=TCONS_00053918|organism=Clytia hemisphaerica|type=transcript|length=1148bpRun BLAST on NCBI protein sequence of TCONS_00053918-protein >TCONS_00053918-protein ID=TCONS_00053918-protein|Name=TCONS_00053918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp MAAPGYISKSVFSPNLPLRFSANLSFLFSQIEDPGQRYNLAKQAGFTSVERun BLAST on NCBI transcript from alignment at scaffold_237:415..22093+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053918 ID=TCONS_00053918|Name=TCONS_00053918|organism=Clytia hemisphaerica|type=transcript|length=21679bp|location=Sequence derived from alignment at scaffold_237:415..22093+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_237:415..22093+ >TCONS_00053918 ID=TCONS_00053918|Name=TCONS_00053918|organism=Clytia hemisphaerica|type=CDS|length=8019bp|location=Sequence derived from alignment at scaffold_237:415..22093+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053918 vs. Swiss-Prot (Human)
Match: HYI (Putative hydroxypyruvate isomerase OS=Homo sapiens GN=HYI PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 2.975e-53 Identity = 96/266 (36.09%), Postives = 150/266 (56.39%), Query Frame = 2
Query: 146 PLRFSANLSFLFSQIEDPGQRYNLAKQAGFTSVEWGNDIYQYPIHDLVEINKDNHFEHVLINMFTGKTK----GLACVPGRSEEFKQCLELSIEYCKNLKCKRLHILAGQYSEDTDITQETKKTYHDTFINNVTFASERLALENMTILLEPISTI---DRYFMESADQAVDIIKELKCQNVKLQLDLFHQQRTRGSLTETITKYLDHIGHIQISQVPDRSEPDDHGEINYKHIFKLLQKLQYQHWIGCEYTPILE-VNGFDWMKPY 919
PLRFSANLS+LF ++ R A +GF +VE + P + VLIN G + GL VPGR F++ LE ++ Y K L C R+H++AG+ + D K F+ N+ A+ LA E++ LLEPI+T +YF+++ QA I++++ N++LQ+D+FH Q G+LT I ++L +GH+Q++QVP R EP GE+N+ ++F+LL+ Y+ ++GCEY P + V G W++ Y
Sbjct: 3 PLRFSANLSWLFPELSGLPARVRAAGSSGFEAVEVAWPYAETPEALARAAREAG-LRLVLINTPPGDQEKGEMGLGAVPGRQAAFREGLEQAVRYAKALGCPRIHLMAGRVPQGADRI-AVKAEMEAVFLENLRHAAGVLAQEDLVGLLEPINTRITDPQYFLDTPQQAAAILQKVGRPNLQLQMDIFHWQIMDGNLTGNIREFLPIVGHVQVAQVPGRGEPSSPGELNFPYLFQLLEDEGYKGFVGCEYQPRGDTVEGLSWLRSY 266 The following BLAST results are available for this feature:
BLAST of TCONS_00053918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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