TCONS_00053893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053893
Unique NameTCONS_00053893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053893 ID=TCONS_00053893|Name=TCONS_00053893|organism=Clytia hemisphaerica|type=transcript|length=236bp
CCATTGACTTTTTGAATGAATAGGCATCCATCTTACTAACTACAATAATA
ATGTCcacactttttcttttaaaaacatgaaaccATCCAAGCCTCACAAA
GAGGGAGAATAAAACAACgtgttgtttttgattttttgaagaaatataca
tttttgatggaaacaTTTAACATTTCCCAGGGTATTAACTATTAGGTCGG
GGGCACTGACCAGGGTATCAAGCAAATGAATTCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_235:101269..101504

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053893 ID=TCONS_00053893|Name=TCONS_00053893|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at scaffold_235:101269..101504 (Clytia hemisphaerica)
CAAGAATTCATTTGCTTGATACCCTGGTCAGTGCCCCCGACCTAATAGTT
AATACCCTGGGAAATGTTAAAtgtttccatcaaaaatgtatatttcttca
aaaaatcaaaaacaacacGTTGTTTTATTCTCCCTCTTTGTGAGGCTTGG
ATggtttcatgtttttaaaagaaaaagtgtgGACATTATTATTGTAGTTA
GTAAGATGGATGCCTATTCATTCAAAAAGTCAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034020XLOC_034020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053893-exon-scaffold_235-1491911889:101269..101504TCONS_00053893-exon-scaffold_235-1491911889:101269..101504Clytia hemisphaericaexon
TCONS_00053893-exon-scaffold_235-1510915933:101269..101504TCONS_00053893-exon-scaffold_235-1510915933:101269..101504Clytia hemisphaericaexon
TCONS_00053893-exon-scaffold_235-1575043694:101269..101504TCONS_00053893-exon-scaffold_235-1575043694:101269..101504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:101269..101504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.959263	0.935432	2.17225	2.12521	0	3.06671	2.46657	3.46376	4.85011	3.00382	0.971862	2.55545	5.24219	3.72681	5.96727	6.57616	3.18367	2.21428	4.80951	15.0283	7.41976	8.14297	5.49936	7.99955	1.02992	0	15.7841	16.4384	2.66177	5.42384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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