TCONS_00053890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053890
Unique NameTCONS_00053890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053890 ID=TCONS_00053890|Name=TCONS_00053890|organism=Clytia hemisphaerica|type=transcript|length=513bp
AACTTCGAGAtatgaatttttcttctgattctCTACAAATCCTATCGAGC
TATTTATTGGAGAGGAGACAGTATGTACAGGTTGATGATAAAACCTCTTC
ATTGAAACCTATGTATTTTGGAGTTCCACAGGGTAGTATATTAGGCCCTG
TGTTATTCAAACTTTATGTCGTCGAGCTTTCAGATCAAGTAACATCATCC
AGTATTCAATACGCTGACGATACCACCCTTTACCGTCACTGTAAACTAAA
GGACTTGCAGGAAACCATCAAGGATATGGAGAAGGATGTTGAGAACCTTC
AGTCGTGGTCAAAAGACAGTAACCTACTATTTAATAGTGACAAAATACAa
ctcatcatttttcattctcaaCGCTTgaggaattttccaaaaaatcaaag
cCAACTATTCCGCTGCTCTGGCCGATCAATCGAGCACAAAACCTACGTTA
AATTGCTTGGTGTCTATCTTGATCATAACTTAACATGGTCAACACATATC
AACGAAATCATCA
Run BLAST on NCBI

protein sequence of TCONS_00053890-protein

>TCONS_00053890-protein ID=TCONS_00053890-protein|Name=TCONS_00053890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
LRDMNFSSDSLQILSSYLLERRQYVQVDDKTSSLKPMYFGVPQGSILGPV
LFKLYVVELSDQVTSSSIQYADDTTLYRHCKLKDLQETIKDMEKDVENLQ
SWSKDSNLLFNSDKIQLIIFHSQRLRNFPKNQSQLFRCSGRSIEHKTYVK
LLGVYLDHNLTWSTHINEII
Run BLAST on NCBI

transcript from alignment at scaffold_235:86817..87329

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053890 ID=TCONS_00053890|Name=TCONS_00053890|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at scaffold_235:86817..87329 (Clytia hemisphaerica)
TGATGATTTCGTTGATATGTGTTGACCATGTTAAGTTATGATCAAGATAG
ACACCAAGCAATTTAACGTAGGTTTTGTGCTCGATTGATCGGCCAGAGCA
GCGGAATAGTTGgctttgattttttggaaaattcctcAAGCGttgagaat
gaaaaatgatgagtTGTATTTTGTCACTATTAAATAGTAGGTTACTGTCT
TTTGACCACGACTGAAGGTTCTCAACATCCTTCTCCATATCCTTGATGGT
TTCCTGCAAGTCCTTTAGTTTACAGTGACGGTAAAGGGTGGTATCGTCAG
CGTATTGAATACTGGATGATGTTACTTGATCTGAAAGCTCGACGACATAA
AGTTTGAATAACACAGGGCCTAATATACTACCCTGTGGAACTCCAAAATA
CATAGGTTTCAATGAAGAGGTTTTATCATCAACCTGTACATACTGTCTCC
TCTCCAATAAATAGCTCGATAGGATTTGTAGagaatcagaagaaaaattc
ataTCTCGAAGTT

Coding sequence (CDS) from alignment at scaffold_235:86817..87329

>TCONS_00053890 ID=TCONS_00053890|Name=TCONS_00053890|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_235:86817..87329 (Clytia hemisphaerica)
GATGATTTCGTTGATATGTGTTGACCATGTTAAGTTATGATCAAGATAGA
CACCAAGCAATTTAACGTAGGTTTTGTGCTCGATTGATCGGCCAGAGCAG
CGGAATAGTTGgctttgattttttggaaaattcctcAAGCGttgagaatg
aaaaatgatgagtTGTATTTTGTCACTATTAAATAGTAGGTTACTGTCTT
TTGACCACGACTGAAGGTTCTCAACATCCTTCTCCATATCCTTGATGGTT
TCCTGCAAGTCCTTTAGTTTACAGTGACGGTAAAGGGTGGTATCGTCAGC
GTATTGAATACTGGATGATGTTACTTGATCTGAAAGCTCGACGACATAAA
GTTTGAATAACACAGGGCCTAATATACTACCCTGTGGAACTCCAAAATAC
ATAGGTTTCAATGAAGAGGTTTTATCATCAACCTGTACATACTGTCTCCT
CTCCAATAAATAGCTCGATAGGATTTGTAGagaatcagaagaaaaattca
taTCTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034017XLOC_034017Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053890-proteinTCONS_00053890-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053890-exon-scaffold_235-1491911889:86817..87329TCONS_00053890-exon-scaffold_235-1491911889:86817..87329Clytia hemisphaericaexon
TCONS_00053890-exon-scaffold_235-1510915933:86817..87329TCONS_00053890-exon-scaffold_235-1510915933:86817..87329Clytia hemisphaericaexon
TCONS_00053890-exon-scaffold_235-1575043694:86817..87329TCONS_00053890-exon-scaffold_235-1575043694:86817..87329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_235supercontigscaffold_235:86817..87329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361124	0.227608	0.368126	0.545061	1.16345	1.07079	1.3376	2.43953	0.668607	1.81326	0.204062	0.67231	0.693363	0.358721	0.413782	0.787797	0.103371	0	0	0.352003	0.485734	0	0.253409	0	0	0	0.816874	1.33719	0	0.395916
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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