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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053889 ID=TCONS_00053889|Name=TCONS_00053889|organism=Clytia hemisphaerica|type=transcript|length=978bp
atctttAGAAGCATGGAAGAATTAGGTCGCGAAAAACGCCCAAATTCACT
TTCATACCCTTTCAAGTCGAAAATTTGTTCCGCGAGAGTTCGAAAATTAA
GATCTAATAAAAAGGAGAGTATTTTTGcgtaattttagtatttttaggCA
TATTCTATTTAACGATTTTCTAACAATTCAAGGAATTTCATTTGTTTCGA
TTTCCCTAGCGTAAAGCTATTCTTTGAGTACAAACATCGCTTTAGTTTTA
TTAGAGTTTTcagcttttaatttttcttcccAGGTGGACTGGAATTAGTT
TGACCTTTTAGTTTTCatctttttataaatttttcattcaaattaagcct
tatttttcatttaaataaCCAGCTCAGTATTATTAGTTCAATTATTATGA
TAATTCAGATATAATACATAAATACATTTTGTTACATGTGCTGTATATTC
AATGTTGTATAAAAGATGTATATATATCGTAAATTATAACATTATAAATt
cgtataattgtttttactatTATTAATTCCATTATTTTTTCTTACATATT
ATACAGtattcaatatttaaaaaatgtATTTATATTGTAAATTATGGTTG
TATATAATACAAACATTCTCATAATCATATGCAATTTCGATATCATTTAT
GTTCTTTTGAAATCAAACCATCAATGTTTTCTCATCGTTTTCAAAATCAT
CCTGCAAAACAAATACATGAAAAAGTAATTTGGGCTCCAAACTTTAATTA
CTTCGAATACTTTAAACTCGGGTTTTTTATTGGCAGTGGGTAACCCGGGT
ATTTTTCCATAAatagaaatactcaaaaaagCAGGTAAATCGAGTTTTTA
TTCCTACCCGGGTTAAGCGAGTAGGGTGAAAACCCGTTTTAATCGAGTAT
ATTGCTCATTGGGTATCGCGGGTAAAACTCGTATTAAAAACCCGAGTTTT
ACCCGGGTTTTACTTGGCTTTGTTTACG Run BLAST on NCBI transcript from alignment at scaffold_235:72836..73813 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053889 ID=TCONS_00053889|Name=TCONS_00053889|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at scaffold_235:72836..73813 (Clytia hemisphaerica)
CGTAAACAAAGCCAAGTAAAACCCGGGTAAAACTCGGGTTTTTAATACGA
GTTTTACCCGCGATACCCAATGAGCAATATACTCGATTAAAACGGGTTTT
CACCCTACTCGCTTAACCCGGGTAGGAATAAAAACTCGATTTACCTGctt
ttttgagtatttctatTTATGGAAAAATACCCGGGTTACCCACTGCCAAT
AAAAAACCCGAGTTTAAAGTATTCGAAGTAATTAAAGTTTGGAGCCCAAA
TTACTTTTTCATGTATTTGTTTTGCAGGATGATTTTGAAAACGATGAGAA
AACATTGATGGTTTGATTTCAAAAGAACATAAATGATATCGAAATTGCAT
ATGATTATGAGAATGTTTGTATTATATACAACCATAATTTACAATATAAA
TacattttttaaatattgaataCTGTATAATATGTAAGAAAAAATAATGG
AATTAATAatagtaaaaacaattatacgaATTTATAATGTTATAATTTAC
GATATATATACATCTTTTATACAACATTGAATATACAGCACATGTAACAA
AATGTATTTATGTATTATATCTGAATTATCATAATAATTGAACTAATAAT
ACTGAGCTGGttatttaaatgaaaaataaggcttaatttgaatgaaaaat
ttataaaaagatGAAAACTAAAAGGTCAAACTAATTCCAGTCCACCTggg
aagaaaaattaaaagctgAAAACTCTAATAAAACTAAAGCGATGTTTGTA
CTCAAAGAATAGCTTTACGCTAGGGAAATCGAAACAAATGAAATTCCTTG
AATTGTTAGAAAATCGTTAAATAGAATATGcctaaaaatactaaaattac
gCAAAAATACTCTCCTTTTTATTAGATCTTAATTTTCGAACTCTCGCGGA
ACAAATTTTCGACTTGAAAGGGTATGAAAGTGAATTTGGGCGTTTTTCGC
GACCTAATTCTTCCATGCTTCTaaagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053889-exon-scaffold_235-1491911889:72836..73813 | TCONS_00053889-exon-scaffold_235-1491911889:72836..73813 | Clytia hemisphaerica | exon |
| TCONS_00053889-exon-scaffold_235-1510915933:72836..73813 | TCONS_00053889-exon-scaffold_235-1510915933:72836..73813 | Clytia hemisphaerica | exon |
| TCONS_00053889-exon-scaffold_235-1575043694:72836..73813 | TCONS_00053889-exon-scaffold_235-1575043694:72836..73813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_235 | supercontig | scaffold_235:72836..73813 . |
Blast
The following BLAST results are available for this feature:
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