TCONS_00053876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053876
Unique NameTCONS_00053876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053876 ID=TCONS_00053876|Name=TCONS_00053876|organism=Clytia hemisphaerica|type=transcript|length=123bp
TTGNACTGTATATGCTTTATTTGGGCTATTACTTTTCGTAAACAGACTTT
TTCTGCTCACTTTGGGCCTCAGTTGAGTATGATAGGTAGATTTTGGGTCG
GGAAAtaggtaaaaagtaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_234:553497..553619

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053876 ID=TCONS_00053876|Name=TCONS_00053876|organism=Clytia hemisphaerica|type=transcript|length=123bp|location=Sequence derived from alignment at scaffold_234:553497..553619 (Clytia hemisphaerica)
aattttactttttacctaTTTCCCGACCCAAAATCTACCTATCATACTCA
ACTGAGGCCCAAAGTGAGCAGAAAAAGTCTGTTTACGAAAAGTAATAGCC
CAAATAAAGCATATACAGTNCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034005XLOC_034005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053876-exon-scaffold_234-1491911889:553497..553619TCONS_00053876-exon-scaffold_234-1491911889:553497..553619Clytia hemisphaericaexon
TCONS_00053876-exon-scaffold_234-1510915933:553497..553619TCONS_00053876-exon-scaffold_234-1510915933:553497..553619Clytia hemisphaericaexon
TCONS_00053876-exon-scaffold_234-1575043694:553497..553619TCONS_00053876-exon-scaffold_234-1575043694:553497..553619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:553497..553619 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top