TCONS_00053872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053872
Unique NameTCONS_00053872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=transcript|length=1054bp
CAAATGTCAAGAAATCTTGAATTTCATTCCAAGCAAGAATTGATTGGTAT
AAAACTGAGTAATTGCCATAAGTCACTGTTTTTACTTCGGGTATTTTTAA
AAGTCCGGACTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCTGCGTAAGAAAGATGACATTGAAAAATAGAATAATATAatgatgttaa
tgttttcttgtCGACATAATGCCTAAGTTTACTGAGAGCTCCATTAGCTC
TCTTCAATTTATTACAAACAAAGTTTATATGGTGTTTCCagttcaaatgt
tcatccagaTATACAACCAAATACTTGACAACTTTGCTTGGTATGAGTTT
GCGTccattgactttgatttttaagTCATAGTTGATCTTCTTTCGAATCG
GACGAAAGATCATAAGTTCAGTCTTACCAACGTTTAACGAGATCTTGTTC
GCCTTCAGCCAGTTCATGAGAAGCTTAAGGTCGGTATTAGCTCGTTTAGC
TATAGGTTTTAAAGATTCATCTCTCAGAAAGAGCATagtatcatcagcaa
acagATTGACAAGAGAATATCGAAGAGCAGTATGAAGATCGTTCACATAA
AGAAGGAAAAGAAGGGGGCCAAGAACGGAACCCTGGGGGACACCATGTTG
CATGCGTCTAGATGTAGAATTTTTACTTGAAACTGAAACAAACTGTGATC
TATCAGTTAGAAAAGAACGAAACCAGTCAAGAGATTTTCCCCGAATGCCA
TAGAAATCTAGTTTAGCGAGTAAGATGGAATGGTCGACAGTGTCAAAAGC
TTTTTGCAGATCTATAAAGATGGAACAACCGAAATCACCTTCATCCAAGA
CACTTGAGATTTGGTTAACACAGTAAAGAAGGGCTGTCTCAGTAGAATGT
CCAGAGCGAAAACCGAATTGTAAAGAATATATGGAATTTGTCTGATCAAG
AAAATTTATCAGTCGTTTGTgcataagtttttgaaaaattttgtcgaTGT
TTGAAAGAAGTGAAATGGGTCTGTAATTTTCAGCATCAAAAGGAGATCCT
TTGT
Run BLAST on NCBI

protein sequence of TCONS_00053872-protein

>TCONS_00053872-protein ID=TCONS_00053872-protein|Name=TCONS_00053872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
KGSPFDAENYRPISLLSNIDKIFQKLMHKRLINFLDQTNSIYSLQFGFRS
GHSTETALLYCVNQISSVLDEGDFGCSIFIDLQKAFDTVDHSILLAKLDF
YGIRGKSLDWFRSFLTDRSQFVSVSSKNSTSRRMQHGVPQGSVLGPLLFL
LYVNDLHTALRYSLVNLFADDTMLFLRDESLKPIAKRANTDLKLLMNWLK
ANKISLNVGKTELMIFRPIRKKINYDLKIKVNGRKLIPSKVVKYLVVYLD
EHLNWKHHINFVCNKLKRANGALSKLRHYVDKKTLTSLYYSIFQCHLSYA
XXXXXXXXXXXXX
Run BLAST on NCBI

transcript from alignment at scaffold_234:508445..509498

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at scaffold_234:508445..509498 (Clytia hemisphaerica)
ACAAAGGATCTCCTTTTGATGCTGAAAATTACAGACCCATTTCACTTCTT TCAAACAtcgacaaaatttttcaaaaacttatgcACAAACGACTGATAAA TTTTCTTGATCAGACAAATTCCATATATTCTTTACAATTCGGTTTTCGCT CTGGACATTCTACTGAGACAGCCCTTCTTTACTGTGTTAACCAAATCTCA AGTGTCTTGGATGAAGGTGATTTCGGTTGTTCCATCTTTATAGATCTGCA AAAAGCTTTTGACACTGTCGACCATTCCATCTTACTCGCTAAACTAGATT TCTATGGCATTCGGGGAAAATCTCTTGACTGGTTTCGTTCTTTTCTAACT GATAGATCACAGTTTGTTTCAGTTTCAAGTAAAAATTCTACATCTAGACG CATGCAACATGGTGTCCCCCAGGGTTCCGTTCTTGGCCCCCTTCTTTTCC TTCTTTATGTGAACGATCTTCATACTGCTCTTCGATATTCTCTTGTCAAT ctgtttgctgatgatactATGCTCTTTCTGAGAGATGAATCTTTAAAACC TATAGCTAAACGAGCTAATACCGACCTTAAGCTTCTCATGAACTGGCTGA AGGCGAACAAGATCTCGTTAAACGTTGGTAAGACTGAACTTATGATCTTT CGTCCGATTCGAAAGAAGATCAACTATGActtaaaaatcaaagtcaatgg ACGCAAACTCATACCAAGCAAAGTTGTCAAGTATTTGGTTGTATAtctgg atgaacatttgaactGGAAACACCATATAAACTTTGTTTGTAATAAATTG AAGAGAGCTAATGGAGCTCTCAGTAAACTTAGGCATTATGTCGacaagaa aacattaacatcatTATATTATTCTATTTTTCAATGTCATCTTTCTTACG CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGTCCGG ACTTTTAAAAATACCCGAAGTAAAAACAGTGACTTATGGCAATTACTCAG TTTTATACCAATCAATTCTTGCTTGGAATGAAATTCAAGATTTCTTGACA TTTG

Coding sequence (CDS) from alignment at scaffold_234:508445..509498

>TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_234:508445..509498 (Clytia hemisphaerica)
AAAGGATCTCCTTTTGATGCTGAAAATTACAGACCCATTTCACTTCTTTC
AAACAtcgacaaaatttttcaaaaacttatgcACAAACGACTGATAAATT
TTCTTGATCAGACAAATTCCATATATTCTTTACAATTCGGTTTTCGCTCT
GGACATTCTACTGAGACAGCCCTTCTTTACTGTGTTAACCAAATCTCAAG
TGTCTTGGATGAAGGTGATTTCGGTTGTTCCATCTTTATAGATCTGCAAA
AAGCTTTTGACACTGTCGACCATTCCATCTTACTCGCTAAACTAGATTTC
TATGGCATTCGGGGAAAATCTCTTGACTGGTTTCGTTCTTTTCTAACTGA
TAGATCACAGTTTGTTTCAGTTTCAAGTAAAAATTCTACATCTAGACGCA
TGCAACATGGTGTCCCCCAGGGTTCCGTTCTTGGCCCCCTTCTTTTCCTT
CTTTATGTGAACGATCTTCATACTGCTCTTCGATATTCTCTTGTCAATct
gtttgctgatgatactATGCTCTTTCTGAGAGATGAATCTTTAAAACCTA
TAGCTAAACGAGCTAATACCGACCTTAAGCTTCTCATGAACTGGCTGAAG
GCGAACAAGATCTCGTTAAACGTTGGTAAGACTGAACTTATGATCTTTCG
TCCGATTCGAAAGAAGATCAACTATGActtaaaaatcaaagtcaatggAC
GCAAACTCATACCAAGCAAAGTTGTCAAGTATTTGGTTGTATAtctggat
gaacatttgaactGGAAACACCATATAAACTTTGTTTGTAATAAATTGAA
GAGAGCTAATGGAGCTCTCAGTAAACTTAGGCATTATGTCGacaagaaaa
cattaacatcatTATATTATTCTATTTTTCAATGTCATCTTTCTTACGCA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034001XLOC_034001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053872-proteinTCONS_00053872-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053872-exon-scaffold_234-1491911889:508445..509498TCONS_00053872-exon-scaffold_234-1491911889:508445..509498Clytia hemisphaericaexon
TCONS_00053872-exon-scaffold_234-1510915933:508445..509498TCONS_00053872-exon-scaffold_234-1510915933:508445..509498Clytia hemisphaericaexon
TCONS_00053872-exon-scaffold_234-1575043694:508445..509498TCONS_00053872-exon-scaffold_234-1575043694:508445..509498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:508445..509498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59539 2.1698 2.38334 2.09496 1.67029 0.942901 0.53979 0.606414 0.430085 0.525892 0.765665 0.158083 0.697906 0.818681 0.61813 0.495309 0.519084 0.404081 2.08997 1.24273 0.859476 1.00982 0.104267 0.237184 0.495858 0.658664 0.0636207 0.208404 0.535945 0.541481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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