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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=transcript|length=1054bp CAAATGTCAAGAAATCTTGAATTTCATTCCAAGCAAGAATTGATTGGTAT AAAACTGAGTAATTGCCATAAGTCACTGTTTTTACTTCGGGTATTTTTAA AAGTCCGGACTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NCTGCGTAAGAAAGATGACATTGAAAAATAGAATAATATAatgatgttaa tgttttcttgtCGACATAATGCCTAAGTTTACTGAGAGCTCCATTAGCTC TCTTCAATTTATTACAAACAAAGTTTATATGGTGTTTCCagttcaaatgt tcatccagaTATACAACCAAATACTTGACAACTTTGCTTGGTATGAGTTT GCGTccattgactttgatttttaagTCATAGTTGATCTTCTTTCGAATCG GACGAAAGATCATAAGTTCAGTCTTACCAACGTTTAACGAGATCTTGTTC GCCTTCAGCCAGTTCATGAGAAGCTTAAGGTCGGTATTAGCTCGTTTAGC TATAGGTTTTAAAGATTCATCTCTCAGAAAGAGCATagtatcatcagcaa acagATTGACAAGAGAATATCGAAGAGCAGTATGAAGATCGTTCACATAA AGAAGGAAAAGAAGGGGGCCAAGAACGGAACCCTGGGGGACACCATGTTG CATGCGTCTAGATGTAGAATTTTTACTTGAAACTGAAACAAACTGTGATC TATCAGTTAGAAAAGAACGAAACCAGTCAAGAGATTTTCCCCGAATGCCA TAGAAATCTAGTTTAGCGAGTAAGATGGAATGGTCGACAGTGTCAAAAGC TTTTTGCAGATCTATAAAGATGGAACAACCGAAATCACCTTCATCCAAGA CACTTGAGATTTGGTTAACACAGTAAAGAAGGGCTGTCTCAGTAGAATGT CCAGAGCGAAAACCGAATTGTAAAGAATATATGGAATTTGTCTGATCAAG AAAATTTATCAGTCGTTTGTgcataagtttttgaaaaattttgtcgaTGT TTGAAAGAAGTGAAATGGGTCTGTAATTTTCAGCATCAAAAGGAGATCCT TTGT Run BLAST on NCBI protein sequence of TCONS_00053872-protein >TCONS_00053872-protein ID=TCONS_00053872-protein|Name=TCONS_00053872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
KGSPFDAENYRPISLLSNIDKIFQKLMHKRLINFLDQTNSIYSLQFGFRS GHSTETALLYCVNQISSVLDEGDFGCSIFIDLQKAFDTVDHSILLAKLDF YGIRGKSLDWFRSFLTDRSQFVSVSSKNSTSRRMQHGVPQGSVLGPLLFL LYVNDLHTALRYSLVNLFADDTMLFLRDESLKPIAKRANTDLKLLMNWLK ANKISLNVGKTELMIFRPIRKKINYDLKIKVNGRKLIPSKVVKYLVVYLD EHLNWKHHINFVCNKLKRANGALSKLRHYVDKKTLTSLYYSIFQCHLSYA XXXXXXXXXXXXX Run BLAST on NCBI transcript from alignment at scaffold_234:508445..509498 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at scaffold_234:508445..509498 (Clytia hemisphaerica) ACAAAGGATCTCCTTTTGATGCTGAAAATTACAGACCCATTTCACTTCTT
TCAAACAtcgacaaaatttttcaaaaacttatgcACAAACGACTGATAAA
TTTTCTTGATCAGACAAATTCCATATATTCTTTACAATTCGGTTTTCGCT
CTGGACATTCTACTGAGACAGCCCTTCTTTACTGTGTTAACCAAATCTCA
AGTGTCTTGGATGAAGGTGATTTCGGTTGTTCCATCTTTATAGATCTGCA
AAAAGCTTTTGACACTGTCGACCATTCCATCTTACTCGCTAAACTAGATT
TCTATGGCATTCGGGGAAAATCTCTTGACTGGTTTCGTTCTTTTCTAACT
GATAGATCACAGTTTGTTTCAGTTTCAAGTAAAAATTCTACATCTAGACG
CATGCAACATGGTGTCCCCCAGGGTTCCGTTCTTGGCCCCCTTCTTTTCC
TTCTTTATGTGAACGATCTTCATACTGCTCTTCGATATTCTCTTGTCAAT
ctgtttgctgatgatactATGCTCTTTCTGAGAGATGAATCTTTAAAACC
TATAGCTAAACGAGCTAATACCGACCTTAAGCTTCTCATGAACTGGCTGA
AGGCGAACAAGATCTCGTTAAACGTTGGTAAGACTGAACTTATGATCTTT
CGTCCGATTCGAAAGAAGATCAACTATGActtaaaaatcaaagtcaatgg
ACGCAAACTCATACCAAGCAAAGTTGTCAAGTATTTGGTTGTATAtctgg
atgaacatttgaactGGAAACACCATATAAACTTTGTTTGTAATAAATTG
AAGAGAGCTAATGGAGCTCTCAGTAAACTTAGGCATTATGTCGacaagaa
aacattaacatcatTATATTATTCTATTTTTCAATGTCATCTTTCTTACG
CAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGTCCGG
ACTTTTAAAAATACCCGAAGTAAAAACAGTGACTTATGGCAATTACTCAG
TTTTATACCAATCAATTCTTGCTTGGAATGAAATTCAAGATTTCTTGACA
TTTG Coding sequence (CDS) from alignment at scaffold_234:508445..509498 >TCONS_00053872 ID=TCONS_00053872|Name=TCONS_00053872|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_234:508445..509498 (Clytia hemisphaerica) AAAGGATCTCCTTTTGATGCTGAAAATTACAGACCCATTTCACTTCTTTC AAACAtcgacaaaatttttcaaaaacttatgcACAAACGACTGATAAATT TTCTTGATCAGACAAATTCCATATATTCTTTACAATTCGGTTTTCGCTCT GGACATTCTACTGAGACAGCCCTTCTTTACTGTGTTAACCAAATCTCAAG TGTCTTGGATGAAGGTGATTTCGGTTGTTCCATCTTTATAGATCTGCAAA AAGCTTTTGACACTGTCGACCATTCCATCTTACTCGCTAAACTAGATTTC TATGGCATTCGGGGAAAATCTCTTGACTGGTTTCGTTCTTTTCTAACTGA TAGATCACAGTTTGTTTCAGTTTCAAGTAAAAATTCTACATCTAGACGCA TGCAACATGGTGTCCCCCAGGGTTCCGTTCTTGGCCCCCTTCTTTTCCTT CTTTATGTGAACGATCTTCATACTGCTCTTCGATATTCTCTTGTCAATct gtttgctgatgatactATGCTCTTTCTGAGAGATGAATCTTTAAAACCTA TAGCTAAACGAGCTAATACCGACCTTAAGCTTCTCATGAACTGGCTGAAG GCGAACAAGATCTCGTTAAACGTTGGTAAGACTGAACTTATGATCTTTCG TCCGATTCGAAAGAAGATCAACTATGActtaaaaatcaaagtcaatggAC GCAAACTCATACCAAGCAAAGTTGTCAAGTATTTGGTTGTATAtctggat gaacatttgaactGGAAACACCATATAAACTTTGTTTGTAATAAATTGAA GAGAGCTAATGGAGCTCTCAGTAAACTTAGGCATTATGTCGacaagaaaa cattaacatcatTATATTATTCTATTTTTCAATGTCATCTTTCTTACGCA GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053872-exon-scaffold_234-1491911889:508445..509498 | TCONS_00053872-exon-scaffold_234-1491911889:508445..509498 | Clytia hemisphaerica | exon |
TCONS_00053872-exon-scaffold_234-1510915933:508445..509498 | TCONS_00053872-exon-scaffold_234-1510915933:508445..509498 | Clytia hemisphaerica | exon |
TCONS_00053872-exon-scaffold_234-1575043694:508445..509498 | TCONS_00053872-exon-scaffold_234-1575043694:508445..509498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_234 | supercontig | scaffold_234:508445..509498 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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