|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053863 ID=TCONS_00053863|Name=TCONS_00053863|organism=Clytia hemisphaerica|type=transcript|length=1534bp
ATCGAAAGCAAGAGAAATCAAGGGTAaagtaaaaatcagaaaaatcgcCC
ATTGGTCCAATCTTGGAGAGAGAGCCACTTGCACCAATTCTTGGTTTTAT
TGATTGAATCAGAGTATTTATAAACGGTATTTGGCTACTAACTTGTTTAA
TGCTGCTAGAATCTACTGAGATTATAGATTTTATAAGTCAGGGGATCTAA
CACCTTAAAACGACGATCGAAAGGAGGATTCGTAGAAAAGAACTATTCAC
GATGAATTCACATGAAAAATTCACTCTTAAAGACTACGTATTCGTTATTG
CTTTCACCTTAATCTTTGTCACTGGCGTTATCGGCAATTCGCTTGTTATT
TACATCTTCAAGCATCGACAAAGACGAATAACAACTCCTATGGAACTGAT
CATCATCTACTTAGCAGTGACAGACTTAATTGCATCTGTATTCAACTCGC
TTCTATACATATACTTGCATATAACATCATTTTCACACTGGGATTTTGGT
CCATTCATGTGTGTTCTATTACCTTCGATCACAACCGTTTCGGTATCAAT
GTCACTTGGGCTTATTATTCTAATCACAATCGAACGTTGTCGCGTACTTT
CGAATCCTTTCGATGGGATGTTTGACAAAAAACATGTTCACTACATGGTG
gcttttgttttcattatcTCAATTGCCAATGAGATACCTTACATCAAAGA
TCTACATATTACCCACCGAGGTGTAGCAACCTATAAATGTGTGAAATCAA
ATTTAGCAGCAAGCTACACTCAAAAGAAGGGCATCGAGTTCAAAACATTC
CCCGAATCTTgtaacaaaaacaaaaccttacaAAGTTTTGAACATACACT
TTCTACATATGACGAAACAACACTTTTTTCGTGTGTTCTCCAAAGTTGCC
ATGAAGTTGATAAATGTATGCCAAGAAGTACCCAAGAATATATGAAAGGT
CGTCTTATAACACTTGTTATTCGTGATGTTTTGTTTATCTCAGTTTTTAC
CGTATGCAACCTATTCATCTATCAAGCTCTCAAAGGGGACGATGAGCGTG
AAAAAATCCTTAAACAATCAGGCATTAACCATACACGGATCAACCCTACC
AAAATGTGTATTATGATTCTAGCTCTAGCAATCGTTTTTGCAGTATTGGT
TCTACCTAAAGATATATACCATATTGTTTATTTAGCTAGACTTTTGAATA
AAGATCATTCGATTTCGGGAGAAAAAGCTGTGGACATTAACTCAGCCCTC
AAGTTGTTACAAAGTTTCAATTGCGTTgcaaatgtttttatttacgcAAG
ACTTCATGGATCGTTCCGAAAATCATTGAATGAAGTTTTTACGACTATCA
TTAGCAGTACagataaatgaatgaatgaaagaaTGAATGAGTCAGTTGAT
GAATGTATGGATGAATAAAACGATGTATGGACCAGCTAGTAAGAAGACGA
AGGAATGATTGAATGAATAGAGACAattacactcattttttttataagta
tacGCCTCGActtatgcttaaccctatgcttggt Run BLAST on NCBI protein sequence of TCONS_00053863-protein >TCONS_00053863-protein ID=TCONS_00053863-protein|Name=TCONS_00053863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MNSHEKFTLKDYVFVIAFTLIFVTGVIGNSLVIYIFKHRQRRITTPMELI
IIYLAVTDLIASVFNSLLYIYLHITSFSHWDFGPFMCVLLPSITTVSVSM
SLGLIILITIERCRVLSNPFDGMFDKKHVHYMVAFVFIISIANEIPYIKD
LHITHRGVATYKCVKSNLAASYTQKKGIEFKTFPESCNKNKTLQSFEHTL
STYDETTLFSCVLQSCHEVDKCMPRSTQEYMKGRLITLVIRDVLFISVFT
VCNLFIYQALKGDDEREKILKQSGINHTRINPTKMCIMILALAIVFAVLV
LPKDIYHIVYLARLLNKDHSISGEKAVDINSALKLLQSFNCVANVFIYAR
LHGSFRKSLNEVFTTIISSTDK Run BLAST on NCBI transcript from alignment at scaffold_234:374561..376094 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053863 ID=TCONS_00053863|Name=TCONS_00053863|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_234:374561..376094 (Clytia hemisphaerica)
accaagcatagggttaagcataagTCGAGGCgtatacttataaaaaaaat
gagtgtaatTGTCTCTATTCATTCAATCATTCCTTCGTCTTCTTACTAGC
TGGTCCATACATCGTTTTATTCATCCATACATTCATCAACTGACTCATTC
AttctttcattcattcatttatctGTACTGCTAATGATAGTCGTAAAAAC
TTCATTCAATGATTTTCGGAACGATCCATGAAGTCTTgcgtaaataaaaa
catttgcAACGCAATTGAAACTTTGTAACAACTTGAGGGCTGAGTTAATG
TCCACAGCTTTTTCTCCCGAAATCGAATGATCTTTATTCAAAAGTCTAGC
TAAATAAACAATATGGTATATATCTTTAGGTAGAACCAATACTGCAAAAA
CGATTGCTAGAGCTAGAATCATAATACACATTTTGGTAGGGTTGATCCGT
GTATGGTTAATGCCTGATTGTTTAAGGATTTTTTCACGCTCATCGTCCCC
TTTGAGAGCTTGATAGATGAATAGGTTGCATACGGTAAAAACTGAGATAA
ACAAAACATCACGAATAACAAGTGTTATAAGACGACCTTTCATATATTCT
TGGGTACTTCTTGGCATACATTTATCAACTTCATGGCAACTTTGGAGAAC
ACACGAAAAAAGTGTTGTTTCGTCATATGTAGAAAGTGTATGTTCAAAAC
TTtgtaaggttttgtttttgttacAAGATTCGGGGAATGTTTTGAACTCG
ATGCCCTTCTTTTGAGTGTAGCTTGCTGCTAAATTTGATTTCACACATTT
ATAGGTTGCTACACCTCGGTGGGTAATATGTAGATCTTTGATGTAAGGTA
TCTCATTGGCAATTGAgataatgaaaacaaaagcCACCATGTAGTGAACA
TGTTTTTTGTCAAACATCCCATCGAAAGGATTCGAAAGTACGCGACAACG
TTCGATTGTGATTAGAATAATAAGCCCAAGTGACATTGATACCGAAACGG
TTGTGATCGAAGGTAATAGAACACACATGAATGGACCAAAATCCCAGTGT
GAAAATGATGTTATATGCAAGTATATGTATAGAAGCGAGTTGAATACAGA
TGCAATTAAGTCTGTCACTGCTAAGTAGATGATGATCAGTTCCATAGGAG
TTGTTATTCGTCTTTGTCGATGCTTGAAGATGTAAATAACAAGCGAATTG
CCGATAACGCCAGTGACAAAGATTAAGGTGAAAGCAATAACGAATACGTA
GTCTTTAAGAGTGAATTTTTCATGTGAATTCATCGTGAATAGTTCTTTTC
TACGAATCCTCCTTTCGATCGTCGTTTTAAGGTGTTAGATCCCCTGACTT
ATAAAATCTATAATCTCAGTAGATTCTAGCAGCATTAAACAAGTTAGTAG
CCAAATACCGTTTATAAATACTCTGATTCAATCAATAAAACCAAGAATTG
GTGCAAGTGGCTCTCTCTCCAAGATTGGACCAATGGgcgatttttctgat
ttttacttTACCCTTGATTTCTCTTGCTTTCGAT Coding sequence (CDS) from alignment at scaffold_234:374561..376094 >TCONS_00053863 ID=TCONS_00053863|Name=TCONS_00053863|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at scaffold_234:374561..376094 (Clytia hemisphaerica)
tcatttatctGTACTGCTAATGATAGTCGTAAAAACTTCATTCAATGATT
TTCGGAACGATCCATGAAGTCTTgcgtaaataaaaacatttgcAACGCAA
TTGAAACTTTGTAACAACTTGAGGGCTGAGTTAATGTCCACAGCTTTTTC
TCCCGAAATCGAATGATCTTTATTCAAAAGTCTAGCTAAATAAACAATAT
GGTATATATCTTTAGGTAGAACCAATACTGCAAAAACGATTGCTAGAGCT
AGAATCATAATACACATTTTGGTAGGGTTGATCCGTGTATGGTTAATGCC
TGATTGTTTAAGGATTTTTTCACGCTCATCGTCCCCTTTGAGAGCTTGAT
AGATGAATAGGTTGCATACGGTAAAAACTGAGATAAACAAAACATCACGA
ATAACAAGTGTTATAAGACGACCTTTCATATATTCTTGGGTACTTCTTGG
CATACATTTATCAACTTCATGGCAACTTTGGAGAACACACGAAAAAAGTG
TTGTTTCGTCATATGTAGAAAGTGTATGTTCAAAACTTtgtaaggttttg
tttttgttacAAGATTCGGGGAATGTTTTGAACTCGATGCCCTTCTTTTG
AGTGTAGCTTGCTGCTAAATTTGATTTCACACATTTATAGGTTGCTACAC
CTCGGTGGGTAATATGTAGATCTTTGATGTAAGGTATCTCATTGGCAATT
GAgataatgaaaacaaaagcCACCATGTAGTGAACATGTTTTTTGTCAAA
CATCCCATCGAAAGGATTCGAAAGTACGCGACAACGTTCGATTGTGATTA
GAATAATAAGCCCAAGTGACATTGATACCGAAACGGTTGTGATCGAAGGT
AATAGAACACACATGAATGGACCAAAATCCCAGTGTGAAAATGATGTTAT
ATGCAAGTATATGTATAGAAGCGAGTTGAATACAGATGCAATTAAGTCTG
TCACTGCTAAGTAGATGATGATCAGTTCCATAGGAGTTGTTATTCGTCTT
TGTCGATGCTTGAAGATGTAAATAACAAGCGAATTGCCGATAACGCCAGT
GACAAAGATTAAGGTGAAAGCAATAACGAATACGTAGTCTTTAAGAGTGA
ATTTTTCATGTGAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053863-exon-scaffold_234-1491911889:374561..376094 | TCONS_00053863-exon-scaffold_234-1491911889:374561..376094 | Clytia hemisphaerica | exon |
| TCONS_00053863-exon-scaffold_234-1510915933:374561..376094 | TCONS_00053863-exon-scaffold_234-1510915933:374561..376094 | Clytia hemisphaerica | exon |
| TCONS_00053863-exon-scaffold_234-1575043694:374561..376094 | TCONS_00053863-exon-scaffold_234-1575043694:374561..376094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_234 | supercontig | scaffold_234:374561..376094 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
