TCONS_00053860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053860
Unique NameTCONS_00053860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053860 ID=TCONS_00053860|Name=TCONS_00053860|organism=Clytia hemisphaerica|type=transcript|length=288bp
AGCAAGTTAGTATGTGCATCTTCACCAGTATGGCTCATATATTGGTGAAC
CCAAGATGGTTCAAACTGGATATTCCCTTTAACCTTAACTGATGTTATTT
TACCACTATATGACGAAGCATGTGCGTTGTATCGATTCGAACCATATTCA
AGGCATGGATAATATCTCCCTACCACTCCTAAATACCAACCCTTAGGCAC
GTTTCGTTCATGGTTGATAGATAGAAAGAATCTTGGATTCAAGAAGGAAT
ATTTTTCGTGCATTTGCCAAGTGCCTTTATACTCTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_234:160129..160416

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053860 ID=TCONS_00053860|Name=TCONS_00053860|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at scaffold_234:160129..160416 (Clytia hemisphaerica)
AGGAGAGTATAAAGGCACTTGGCAAATGCACGAAAAATATTCCTTCTTGA
ATCCAAGATTCTTTCTATCTATCAACCATGAACGAAACGTGCCTAAGGGT
TGGTATTTAGGAGTGGTAGGGAGATATTATCCATGCCTTGAATATGGTTC
GAATCGATACAACGCACATGCTTCGTCATATAGTGGTAAAATAACATCAG
TTAAGGTTAAAGGGAATATCCAGTTTGAACCATCTTGGGTTCACCAATAT
ATGAGCCATACTGGTGAAGATGCACATACTAACTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033989XLOC_033989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053860-exon-scaffold_234-1491911889:160129..160416TCONS_00053860-exon-scaffold_234-1491911889:160129..160416Clytia hemisphaericaexon
TCONS_00053860-exon-scaffold_234-1510915933:160129..160416TCONS_00053860-exon-scaffold_234-1510915933:160129..160416Clytia hemisphaericaexon
TCONS_00053860-exon-scaffold_234-1575043694:160129..160416TCONS_00053860-exon-scaffold_234-1575043694:160129..160416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_234supercontigscaffold_234:160129..160416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.3073	0	1.48503	3.01314	1.42861	0	2.15144	0.753136	0.932881	0	0.595225	0.297199	1.54322	1.77623	0.544619	0	1.37536	0	0.497087	0	0	0.512371	1.39746	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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